genome.fa.s5.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  97  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35829143--35829199	21	2.7	22	76	17	59	61	10	8	19	1.54
35829112--35829199	41	2.1	41	83	6	106	61	9	7	21	1.51
35831834--35831868	12	2.9	12	84	16	54	48	0	0	51	1.00
35832019--35832103	21	3.9	21	83	9	91	23	2	20	54	1.56
35832012--35832103	42	2.1	44	88	8	134	23	2	19	54	1.55
35832019--35832114	21	4.2	23	79	12	83	23	3	18	54	1.58
35857843--35857872	2	15.0	2	92	0	51	0	46	0	53	1.00
35857970--35857995	3	8.7	3	100	0	52	30	0	34	34	1.58
35858603--35858635	2	16.5	2	100	0	66	51	0	0	48	1.00
35858821--35858849	6	5.0	6	91	8	51	0	13	0	86	0.58
35859193--35859250	25	2.3	23	80	13	62	51	0	1	46	1.11
35859224--35859295	29	2.6	27	80	6	81	55	0	1	43	1.08
35868939--35869040	2	52.0	2	78	13	88	45	4	1	47	1.35
35868944--35869062	60	2.0	57	95	4	211	42	5	3	47	1.44
35870007--35870049	21	2.0	21	86	0	59	39	9	16	34	1.80
35872401--35872428	2	14.0	2	100	0	56	50	0	0	50	1.00
35872489--35872522	2	17.0	2	100	0	68	50	0	0	50	1.00
35872401--35872580	92	2.0	89	96	3	333	47	4	6	40	1.50
35873029--35873066	19	2.0	19	94	0	67	28	0	28	42	1.56
35874442--35874466	13	1.9	13	100	0	50	44	0	8	48	1.32
35874595--35874643	8	6.5	8	88	11	77	77	0	0	22	0.77
35874597--35874645	7	6.9	7	88	11	73	75	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35874596--35874643	15	3.3	15	97	2	89	77	0	0	22	0.78
35874596--35874658	15	4.4	14	82	13	58	76	0	0	23	0.79
35874919--35875090	80	2.2	79	94	3	301	54	3	37	5	1.40
35875069--35875102	13	2.7	12	86	13	50	50	0	44	5	1.26
35875067--35875106	14	2.8	15	85	14	66	55	0	40	5	1.22
35875600--35875637	2	20.0	2	89	10	62	50	0	0	50	1.00
35878657--35878700	22	2.2	19	84	12	52	63	11	25	0	1.27
35891324--35891357	16	2.2	15	89	5	50	0	26	11	61	1.30
35893575--35893610	18	2.0	18	100	0	72	50	0	0	50	1.00
35893564--35893635	18	4.1	18	82	7	67	48	5	4	41	1.45
35901417--35901459	2	21.5	2	90	0	68	44	0	2	53	1.13
35910013--35910453	171	2.5	170	90	3	657	52	3	34	9	1.52
35914028--35914136	37	2.9	36	73	10	103	44	22	11	22	1.85
35915764--35915793	2	15.0	2	100	0	60	50	0	0	50	1.00
35919743--35919783	20	2.0	20	85	0	55	29	7	29	34	1.84
35920824--35920855	2	16.0	2	100	0	64	50	0	0	50	1.00
35934560--35934891	83	4.0	83	99	0	637	43	23	8	24	1.81
35935961--35935998	15	2.4	16	91	4	60	50	2	7	39	1.46
35937080--35937179	45	2.2	45	94	0	173	32	21	16	31	1.95
35937494--35937525	2	16.0	2	100	0	64	50	0	0	50	1.00
35939701--35939949	123	2.0	123	100	0	498	28	17	24	29	1.97
35949590--35949778	93	2.0	93	88	4	283	53	4	31	10	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35949773--35950019	117	2.1	117	87	4	356	53	4	35	7	1.48
35958419--35958563	35	4.1	35	72	2	112	46	22	11	20	1.82
35958747--35958829	29	2.9	29	79	0	85	22	24	7	45	1.77
35958752--35958845	29	3.2	28	78	3	80	20	25	6	47	1.73
35960311--35960390	40	2.0	40	92	0	133	38	25	13	22	1.91
35961472--35961595	35	3.5	35	75	8	117	47	16	13	22	1.81
35961855--35961925	29	2.4	31	77	13	78	16	21	5	56	1.61
35967219--35967363	72	2.0	72	93	0	245	31	20	21	26	1.98
35980216--35980256	21	2.0	21	95	0	73	24	14	29	31	1.95
35986158--35986214	15	3.7	15	83	2	78	52	0	5	42	1.24
35986165--35986234	30	2.3	30	87	4	88	52	0	10	37	1.35
35986165--35986223	30	2.0	30	93	0	100	49	0	10	40	1.37
35986313--35986381	19	3.4	20	76	11	61	40	0	0	59	0.97
35986313--35986381	20	3.4	21	78	11	72	40	0	0	59	0.97
35986329--35986391	24	2.7	24	70	7	58	34	0	0	65	0.93
35986535--35986579	19	2.4	19	81	7	56	24	2	2	71	1.09
35986711--35986758	16	3.1	16	82	8	55	50	0	0	50	1.00
35986721--35986766	14	3.1	15	84	9	58	54	0	0	45	0.99
35998023--35998050	14	2.0	14	100	0	56	71	0	0	28	0.86
36014996--36015025	2	15.0	2	92	0	51	53	0	46	0	1.00
36015483--36015523	18	2.3	18	91	4	66	36	17	9	36	1.82
36022651--36022687	2	19.5	2	83	10	51	0	45	0	54	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36033285--36033311	2	13.5	2	100	0	54	51	0	48	0	1.00
36036307--36036364	28	2.1	28	100	0	116	27	13	22	36	1.92
36044033--36044090	28	2.1	28	90	0	89	34	22	10	32	1.88
36059819--36059852	2	17.0	2	100	0	68	50	0	0	50	1.00
36059852--36059887	2	18.0	2	100	0	72	50	0	50	0	1.00
36071775--36071811	15	2.5	15	80	20	51	83	2	2	10	0.84
36075621--36075744	54	2.3	54	80	2	144	41	8	11	38	1.72
36076026--36076114	43	2.1	43	100	0	178	37	15	6	40	1.74
36076128--36076152	2	12.5	2	100	0	50	48	0	0	52	1.00
36087723--36087749	2	13.5	2	100	0	54	51	0	0	48	1.00
36092076--36092125	2	26.0	2	92	8	86	50	0	0	50	1.00
36094261--36094494	79	3.0	79	98	0	450	30	21	11	37	1.88
36096660--36096807	72	2.0	73	97	1	280	33	15	16	34	1.90
36102695--36102748	17	3.3	17	78	19	53	53	5	1	38	1.35
36102684--36102762	32	2.4	32	76	4	77	51	5	1	41	1.31
36107104--36107141	19	2.0	19	89	0	58	42	13	13	31	1.82
36109082--36109114	17	1.9	17	88	11	50	30	3	0	66	1.06
36121516--36121545	12	2.4	13	94	5	53	40	0	0	60	0.97
36123046--36123091	2	23.0	2	83	16	60	47	2	0	47	1.14
36123047--36123091	17	2.6	17	83	13	65	46	2	0	48	1.14
36123423--36123451	4	7.2	4	100	0	58	72	27	0	0	0.85
36127952--36128024	36	2.0	36	97	0	137	38	17	13	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36128818--36128866	16	2.8	17	85	11	64	42	0	0	57	0.99
36128817--36128952	27	5.1	27	67	23	90	41	0	1	55	1.14
36128794--36129116	74	4.2	74	72	14	214	40	1	2	54	1.24
36128920--36128997	40	2.0	40	84	5	104	42	5	0	52	1.23
36128991--36129113	29	4.4	27	66	22	67	39	0	4	54	1.28
36128972--36129025	24	2.2	24	78	12	56	38	0	1	59	1.08
36128972--36129180	83	2.4	86	82	8	253	40	1	3	55	1.25
36128789--36129092	147	2.1	147	86	4	425	42	1	2	53	1.23
36128873--36129266	118	3.3	118	77	13	307	39	2	2	55	1.28
36129109--36129210	27	4.0	25	75	12	91	39	3	0	55	1.25
36129175--36129214	19	2.1	19	86	9	55	40	5	0	55	1.22
36129114--36129210	24	4.0	23	73	22	74	40	4	1	54	1.26
36129068--36129250	59	3.1	58	66	10	138	37	2	2	57	1.27
36129231--36129369	44	3.2	42	80	11	147	40	0	2	56	1.16
36129065--36129326	118	2.3	115	84	6	309	38	1	3	56	1.26
36130545--36130615	28	2.7	25	78	8	79	70	0	2	26	1.01
36130744--36130806	31	2.1	30	87	3	90	41	1	0	57	1.08
36134376--36134405	3	10.0	3	100	0	60	66	0	0	33	0.92
36139092--36139129	14	2.5	16	87	8	53	78	0	15	5	0.91
36139104--36139137	17	2.1	17	88	5	52	82	0	17	0	0.67
36144023--36144063	7	5.9	7	94	0	73	26	17	29	26	1.97
36144645--36144693	25	1.9	26	84	12	66	65	4	0	30	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36146503--36146561	27	2.2	27	84	0	73	59	3	5	32	1.36
36150293--36150373	31	2.6	31	80	5	94	38	2	2	56	1.26
36150307--36150373	30	2.2	29	80	12	82	38	2	1	56	1.24
36152574--36152759	92	2.0	92	91	0	300	30	17	18	33	1.94
36155726--36155852	62	2.0	62	93	0	218	28	12	11	47	1.77
36156640--36157146	259	2.0	259	92	0	843	31	15	19	32	1.93
36157897--36157928	16	2.0	16	100	0	64	37	18	18	25	1.94
36165249--36165341	28	3.2	28	80	10	100	29	9	11	49	1.71
36168360--36168462	54	1.9	54	100	0	206	45	20	9	24	1.81
36170119--36170173	14	3.8	14	73	22	51	43	0	0	56	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103