genome.fa.s5.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  61  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23145377--23145482	42	2.5	42	92	0	167	21	18	35	23	1.95
23145795--23145886	39	2.4	39	81	3	114	23	18	22	34	1.96
23158197--23158236	20	2.0	20	95	0	71	15	37	10	37	1.80
23158436--23158480	2	22.5	2	100	0	90	51	0	48	0	1.00
23159057--23159098	20	2.2	19	84	16	52	30	2	26	40	1.69
23178768--23178814	19	2.4	20	89	3	69	44	0	0	55	0.99
23188452--23188493	21	2.0	22	85	4	59	50	7	28	14	1.69
23194437--23194481	16	2.9	15	81	12	54	4	8	8	77	1.10
23198883--23198917	13	2.6	14	86	9	54	71	0	2	25	1.00
23199915--23199963	2	24.0	2	88	12	73	46	2	2	48	1.25
23199911--23199963	21	2.6	21	91	8	83	47	1	3	47	1.31
23203775--23203801	13	2.1	13	100	0	54	33	0	0	66	0.92
23204713--23204739	13	2.1	13	100	0	54	48	7	22	22	1.75
23207232--23207277	15	3.1	15	81	12	58	56	17	2	23	1.52
23209841--23209878	19	2.0	19	94	0	67	42	28	0	28	1.56
23210665--23210697	16	2.1	17	88	11	52	57	18	12	12	1.64
23214657--23214717	29	2.1	29	100	0	122	37	6	24	31	1.81
23216869--23216906	20	1.9	20	100	0	76	31	13	26	28	1.93
23216311--23217486	592	2.0	592	97	0	2235	36	13	20	29	1.91
23228528--23228709	61	3.0	60	84	6	233	23	31	18	27	1.97
23228528--23228706	60	3.0	59	86	4	241	22	31	18	27	1.97
23233463--23233497	11	3.3	11	88	8	54	0	22	11	65	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23233705--23233764	28	2.1	28	81	0	66	36	21	13	28	1.91
23234150--23234178	2	14.5	2	100	0	58	51	0	0	48	1.00
23236127--23236156	13	2.3	13	94	0	51	23	10	50	16	1.75
23236094--23236193	50	2.0	50	94	0	173	30	11	40	19	1.86
23236702--23236740	19	2.1	19	95	0	69	33	25	17	23	1.96
23243826--23243865	15	2.4	18	80	12	50	50	5	0	45	1.23
23245133--23245157	13	1.9	13	100	0	50	44	0	8	48	1.32
23250590--23250628	17	2.3	17	86	0	51	76	2	0	20	0.90
23251616--23251640	13	1.9	13	100	0	50	44	0	8	48	1.32
23253851--23253906	24	2.2	25	79	14	62	50	14	7	28	1.69
23253960--23254044	29	2.8	31	85	8	122	41	8	14	36	1.75
23253979--23254052	29	2.7	28	87	8	82	43	10	10	35	1.75
23266231--23266275	22	2.0	23	83	8	58	31	20	0	48	1.49
23272577--23272763	66	2.8	66	79	8	200	35	24	13	26	1.92
23272599--23272763	67	2.5	66	82	3	206	36	24	12	26	1.91
23278680--23278713	12	2.8	12	90	0	50	67	0	29	2	1.05
23278738--23278839	6	17.0	6	72	18	61	62	3	32	0	1.20
23278747--23278834	23	3.8	22	69	17	72	63	4	30	1	1.21
23278749--23278849	16	6.2	15	69	20	53	64	3	30	0	1.18
23278767--23278873	31	3.6	30	75	12	105	59	6	31	1	1.33
23278760--23278877	28	4.3	27	73	17	84	62	5	29	1	1.28
23278767--23278906	59	2.5	56	85	9	171	63	5	30	1	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23278751--23278855	17	5.7	18	70	20	65	63	3	31	0	1.18
23278871--23278904	10	3.2	10	84	15	50	76	0	23	0	0.79
23278814--23278908	12	7.2	12	71	23	52	68	3	27	1	1.11
23278930--23278972	16	2.7	16	79	13	52	69	0	27	2	1.00
23278871--23279030	71	2.3	71	80	5	173	59	3	35	1	1.26
23279851--23280032	60	3.0	60	86	4	244	28	19	29	23	1.98
23293061--23293090	15	2.0	15	93	0	51	23	23	13	40	1.90
23293283--23293315	17	2.0	17	88	5	50	15	30	18	36	1.91
23302450--23302699	72	3.4	73	81	4	249	28	9	24	37	1.86
23304076--23305596	252	6.0	252	89	1	2264	32	12	8	46	1.72
23307856--23307901	21	2.2	20	84	7	56	15	21	6	56	1.61
23307861--23307901	21	1.9	22	90	5	66	17	24	7	51	1.70
23308919--23308957	21	1.9	20	85	15	53	30	5	7	56	1.49
23308593--23310552	252	7.8	251	87	3	2697	32	12	8	47	1.70
23310179--23310217	21	1.9	20	85	15	53	30	5	7	56	1.49
23321142--23321256	37	3.1	37	94	0	203	25	36	9	28	1.87
23324843--23324880	19	2.0	19	94	0	67	28	0	28	42	1.56
23331155--23331232	37	2.1	37	100	0	156	24	38	10	26	1.87
23335082--23335126	23	2.0	23	91	8	74	31	44	2	22	1.65
23336815--23336839	13	1.9	13	100	0	50	44	0	8	48	1.32
23341260--23341636	96	3.9	95	85	4	528	22	25	3	48	1.68
23341272--23341636	190	1.9	190	90	1	588	22	24	3	48	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23353850--23353902	28	1.9	27	88	3	79	28	22	18	30	1.98
23353947--23353992	20	2.3	20	88	7	67	45	17	4	32	1.68
23355884--23356021	40	3.5	40	88	5	176	23	20	35	20	1.96
23359988--23360062	38	2.0	38	86	5	107	49	12	8	30	1.68
23360786--23360810	12	2.1	12	100	0	50	40	8	8	44	1.63
23362716--23362757	19	2.2	19	86	0	57	59	23	2	14	1.47
23362791--23362835	13	3.4	13	81	6	54	71	11	6	11	1.31
23363338--23363487	78	1.9	78	88	0	228	38	21	16	24	1.93
23369571--23369606	17	2.1	17	100	0	72	27	0	36	36	1.57
23374509--23374640	71	1.9	71	95	0	237	44	3	20	31	1.67
23376583--23376888	153	2.0	153	96	0	567	35	12	16	35	1.87
23377096--23377157	25	2.5	25	89	0	88	32	19	8	40	1.81
23381589--23381620	15	2.1	15	100	0	64	56	12	0	31	1.37
23381610--23381671	25	2.5	25	83	0	79	32	16	8	43	1.77
23389351--23389411	21	2.9	21	85	4	79	40	18	9	31	1.83
23405971--23406018	23	2.1	23	81	14	55	50	6	20	22	1.71
23410971--23410997	14	1.9	14	100	0	54	22	3	7	66	1.33
23411469--23411512	22	2.0	22	90	0	70	22	25	20	31	1.98
23412792--23412866	27	2.8	27	87	4	107	33	12	20	34	1.89
23418558--23418588	2	15.5	2	100	0	62	51	0	0	48	1.00
23419311--23419412	34	3.0	34	85	0	132	21	9	25	43	1.83
23420264--23420465	103	2.0	103	96	0	377	49	6	13	30	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23420885--23421151	144	1.8	144	88	4	403	36	13	15	34	1.86
23422961--23423007	17	2.8	17	77	3	51	61	17	6	14	1.53
23424933--23424982	14	3.6	14	75	17	50	0	30	2	68	1.01
23427305--23428561	252	5.1	250	79	5	1224	34	10	6	47	1.65
23427305--23428561	500	2.5	498	81	5	1384	34	10	6	47	1.65
23440200--23440256	24	2.4	24	93	0	105	31	29	7	31	1.84
23459459--23459692	47	5.0	46	79	10	215	27	18	32	21	1.96
23459486--23459692	94	2.2	94	87	1	290	27	18	32	21	1.96
23459680--23459779	53	1.9	52	85	6	139	28	17	27	28	1.97
23460266--23460489	31	7.3	31	86	1	288	22	17	23	36	1.94
23460266--23460489	92	2.4	93	87	2	308	22	17	23	36	1.94
23462130--23462738	156	3.9	156	86	3	818	32	19	20	27	1.97
23463104--23463401	31	9.6	31	79	5	316	20	20	19	39	1.93
23463117--23463372	93	2.8	93	89	1	381	19	19	19	41	1.91
23464855--23464933	16	5.1	15	75	10	70	32	8	5	53	1.54
23464879--23464939	14	4.1	14	75	19	61	32	11	1	54	1.46
23466036--23466356	31	10.4	31	82	5	380	25	15	22	35	1.94
23466034--23466356	93	3.5	93	95	0	574	26	15	22	35	1.94
23466340--23466371	15	2.1	15	100	0	64	28	6	12	53	1.62
23466309--23466402	46	2.0	46	84	8	120	25	11	21	41	1.87
23466354--23466565	31	6.9	31	80	5	225	24	16	20	38	1.92
23466278--23466433	77	2.0	78	85	6	210	25	14	21	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23466248--23466464	108	2.0	108	90	1	346	24	14	21	38	1.91
23466216--23466495	139	2.0	139	82	8	347	24	14	22	38	1.92
23466354--23466565	93	2.3	93	83	7	261	24	16	20	38	1.92
23470043--23470125	31	2.7	31	83	3	96	34	22	15	26	1.94
23470106--23470192	23	3.7	23	78	4	84	22	28	20	27	1.99
23470221--23470395	55	3.2	54	81	3	197	41	33	14	10	1.80
23472484--23472658	82	2.2	81	78	4	192	46	9	4	39	1.57
23478481--23478513	2	17.0	2	93	6	59	51	0	48	0	1.00
23478546--23478579	2	17.0	2	93	0	59	52	0	47	0	1.00
23481541--23481608	30	2.3	30	89	0	100	13	30	4	51	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103