genome.fa.s179.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  1  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40--93	25	2.2	24	83	6	63	35	5	18	40	1.74
583--657	28	2.7	27	82	12	73	13	5	2	78	1.02
736--1138	59	6.7	58	86	8	517	44	8	13	33	1.73
735--1138	124	3.4	119	87	8	572	45	8	13	33	1.73
6130--6708	119	5.0	116	86	6	721	34	13	8	43	1.74
6130--6688	57	9.6	57	84	6	660	35	13	8	42	1.75
6347--6437	25	3.4	25	66	16	65	35	13	12	39	1.81
6713--6737	12	2.1	12	100	0	50	84	0	0	16	0.63
7131--7171	19	2.1	20	90	4	66	9	17	31	41	1.82
7693--7723	3	10.7	3	93	6	55	70	0	0	29	0.87
7801--7885	19	4.6	17	78	17	89	76	1	1	21	0.92
7801--7884	6	13.5	6	81	16	91	77	1	1	20	0.90
7801--7884	32	2.7	31	83	3	114	77	1	1	20	0.90
7815--7883	25	2.8	24	85	12	86	78	1	1	18	0.91
7895--7921	2	13.5	2	100	0	54	51	0	0	48	1.00
8037--9260	181	6.9	181	73	10	435	40	8	10	41	1.69
8429--8461	17	2.0	17	88	5	50	48	6	12	33	1.65
8513--9321	177	4.5	180	78	7	744	40	7	11	40	1.69
9908--9952	21	2.1	21	83	0	54	57	2	2	37	1.23
10664--10698	13	2.8	12	87	8	52	42	0	8	48	1.33
10732--10779	15	3.0	15	73	26	53	56	0	6	37	1.25
11080--11104	3	8.3	3	100	0	50	36	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11261--11306	21	2.1	22	84	4	58	58	2	2	36	1.22
11861--11936	18	4.1	18	72	14	64	42	1	0	56	1.07
12172--12232	31	2.0	30	83	3	77	50	0	3	45	1.17
12270--12312	10	4.4	10	76	5	52	53	0	2	44	1.13
13018--13043	11	2.4	11	100	0	52	42	0	0	57	0.98
15065--15117	25	2.1	26	86	6	74	52	0	0	47	1.00
15453--15579	65	2.0	63	80	9	141	48	2	2	46	1.27
15487--15580	15	6.1	15	68	22	52	47	2	1	48	1.20
16251--16320	26	2.9	25	82	14	85	52	1	1	44	1.18
16850--17013	10	15.8	10	74	13	111	43	3	1	50	1.30
16855--17003	21	7.2	20	80	11	149	44	4	1	49	1.29
17019--17097	29	2.8	29	81	18	103	45	1	2	50	1.23
17213--17314	39	2.7	39	78	6	102	39	3	1	54	1.30
17248--17418	11	15.9	11	66	20	51	38	2	2	56	1.30
17332--17419	11	8.8	10	72	16	67	39	1	3	55	1.24
17327--17419	20	4.7	20	70	17	68	40	1	3	54	1.23
17515--17615	29	3.5	28	69	23	84	45	0	4	49	1.23
17515--17575	8	8.0	8	75	10	56	45	0	3	50	1.17
22021--22105	2	43.5	2	70	13	52	47	1	2	49	1.22
22217--22283	2	34.5	2	85	5	57	40	2	5	50	1.42
22782--22815	1	34.0	1	100	0	68	100	0	0	0	0.00
36273--36303	13	2.5	12	94	5	53	90	0	0	9	0.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37919--37952	17	1.9	17	88	5	50	52	8	23	14	1.69
40664--40690	2	13.5	2	100	0	54	51	0	48	0	1.00
41642--41686	19	2.3	19	85	11	56	64	4	2	28	1.25
49724--49764	4	10.2	4	94	0	73	21	24	2	51	1.60
52393--52424	15	2.1	15	94	0	55	46	0	3	50	1.17
52234--52476	127	1.8	132	85	11	347	47	3	6	43	1.44
55037--55091	22	2.5	21	77	8	65	47	1	1	49	1.23
56796--56844	23	2.2	22	88	3	71	81	2	10	6	0.94
56809--56857	23	2.0	23	84	7	62	81	2	14	2	0.87
57350--57391	15	3.0	14	86	6	50	83	7	4	4	0.91
57358--57392	16	2.3	15	90	5	52	85	8	2	2	0.79
57351--57394	22	2.0	22	86	4	61	84	6	6	2	0.86
57521--57554	15	2.3	15	89	0	50	85	8	2	2	0.80
58966--59009	23	1.9	23	90	9	72	86	9	0	4	0.70
59121--59175	21	2.7	21	86	5	78	63	1	0	34	1.05
59627--59716	34	2.7	32	73	11	81	48	4	1	45	1.29
59746--59788	12	3.6	12	87	6	52	32	0	0	67	0.91
59746--59789	18	2.5	17	82	10	52	34	0	0	65	0.93
59776--59815	21	1.9	21	94	0	71	35	2	5	57	1.34
59986--60034	17	2.7	19	76	17	50	67	2	4	26	1.19
64178--64402	115	2.0	114	95	0	405	30	4	22	42	1.75
69529--69605	39	2.0	39	89	0	118	32	38	7	20	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80404--80509	39	2.7	40	83	1	115	32	11	12	44	1.77
80441--80529	40	2.2	40	91	0	142	29	8	15	46	1.77
80564--80588	12	2.1	12	100	0	50	92	0	8	0	0.40
80763--80839	29	2.6	30	79	4	84	23	3	2	70	1.17
82040--82267	96	2.3	99	81	5	257	46	7	7	39	1.60
82966--83173	63	3.3	63	79	4	249	34	9	17	38	1.81
82990--83172	62	2.9	64	80	7	196	35	9	16	38	1.82
85278--85354	3	25.7	3	87	0	100	68	0	27	3	1.06
85276--85362	12	7.8	12	74	17	71	67	0	26	5	1.12
85290--85376	15	5.7	15	85	5	93	74	0	21	3	0.96
85298--85376	6	12.8	6	76	10	52	74	0	21	3	0.97
85278--85376	9	11.1	9	76	10	78	72	0	23	4	1.01
92003--92083	37	2.3	35	91	4	126	29	1	9	59	1.38
92300--92434	66	2.0	67	95	1	245	41	5	14	38	1.69
92759--92796	3	12.7	3	94	0	67	28	0	0	71	0.87
94988--95023	15	2.4	15	95	0	63	19	8	8	63	1.47
95597--95696	49	2.0	49	80	3	112	44	13	14	29	1.82
102726--102750	6	4.2	6	100	0	50	16	52	0	32	1.44
112725--112758	11	2.9	12	86	8	52	67	0	2	29	1.05
119316--119341	8	3.2	8	100	0	52	26	0	50	23	1.50
120444--120476	5	6.8	5	93	6	59	15	0	0	84	0.61
120430--120476	24	2.0	24	86	0	67	14	0	4	80	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120441--120478	10	3.8	10	82	10	51	15	0	0	84	0.63
120614--120653	12	3.4	12	86	6	55	35	0	0	65	0.93
120610--120650	19	2.1	20	86	4	57	39	0	0	60	0.96
133210--133751	266	2.0	270	90	4	860	39	12	13	34	1.82
141558--141618	24	2.5	26	84	10	76	37	3	3	55	1.32
143382--143521	55	2.5	56	81	3	167	30	12	12	44	1.79
143615--143661	24	2.0	24	83	8	60	42	2	0	55	1.12
144593--144719	68	1.9	68	93	0	218	44	13	3	37	1.62
147648--147723	25	3.2	25	63	30	65	40	17	0	42	1.49
147630--147723	47	2.0	47	100	0	188	42	17	0	40	1.49
151969--152199	125	1.8	125	81	9	292	35	14	12	37	1.84
154471--154524	21	2.6	21	78	0	63	42	16	18	22	1.89
156281--156414	62	2.2	61	80	7	146	39	13	14	32	1.85
158022--158073	26	2.0	27	84	3	70	38	7	11	42	1.70
160134--160215	18	4.6	18	71	8	60	36	9	9	43	1.71
160259--160292	18	1.9	18	88	5	52	32	8	20	38	1.84
160348--160388	21	2.0	21	85	0	55	48	21	0	29	1.50
160533--160599	25	2.9	23	71	8	64	35	17	7	38	1.78
160493--160639	46	3.2	46	80	9	165	38	18	6	37	1.76
160662--160699	20	1.9	20	94	0	67	36	15	2	44	1.61
160682--160746	24	2.7	24	90	0	94	43	13	6	36	1.70
160660--160766	24	4.8	23	76	10	82	42	14	6	36	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
164342--164511	67	2.5	67	88	0	241	40	12	25	21	1.88
164386--164535	67	2.2	67	84	0	183	42	12	22	22	1.86
164418--164565	67	2.2	67	82	2	172	43	9	23	23	1.83
165244--165269	8	3.2	8	100	0	52	61	15	0	23	1.33
168306--168383	36	2.2	36	95	0	138	38	17	16	26	1.92
168615--168678	23	2.7	25	76	13	64	9	10	6	73	1.25
168629--168713	19	4.4	19	73	13	57	5	9	7	77	1.11
170477--170509	17	1.9	17	93	0	57	66	12	0	21	1.23
172543--172588	14	3.4	14	77	22	62	78	2	6	13	1.04
178282--178324	11	3.8	11	87	6	68	27	0	0	72	0.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77