genome.fa.s179.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  35  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7155902--7155943	22	1.9	22	90	0	66	30	11	9	47	1.72
7159251--7159295	23	2.0	22	83	12	56	17	0	6	75	1.01
7161665--7161874	104	2.0	104	93	0	357	24	20	26	28	1.99
7162683--7162712	16	1.9	16	93	6	53	63	0	0	36	0.95
7164150--7164295	29	4.7	31	75	16	117	47	32	0	18	1.54
7164158--7164362	45	4.5	44	78	11	184	48	32	0	18	1.52
7164159--7164362	30	6.7	30	75	15	140	49	32	0	18	1.52
7164162--7164341	15	11.7	16	76	14	121	49	30	0	19	1.53
7164352--7164413	14	4.2	15	82	10	65	51	35	0	12	1.40
7172991--7173057	22	3.1	21	87	6	89	31	28	16	23	1.96
7173122--7173460	110	3.1	111	80	6	357	23	19	17	39	1.92
7173422--7173479	23	2.6	23	91	2	91	25	24	22	27	2.00
7173315--7173599	133	2.2	132	83	1	354	24	21	17	37	1.94
7173446--7173704	110	2.3	109	82	2	295	22	21	18	37	1.94
7173203--7173721	242	2.1	241	86	1	707	22	20	18	38	1.93
7173672--7173731	22	2.7	22	84	5	77	26	28	18	26	1.98
7173953--7173982	16	1.9	16	93	6	53	63	0	0	36	0.95
7173978--7174018	14	2.9	14	81	0	55	82	2	14	0	0.76
7175507--7175544	18	2.1	19	95	5	69	42	36	0	21	1.53
7175511--7175617	16	6.7	15	77	15	65	47	27	1	23	1.62
7175511--7175626	31	3.7	30	76	11	108	46	27	2	23	1.65
7175503--7175603	16	6.2	16	79	10	98	48	28	1	20	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7175629--7175661	14	2.3	15	89	5	50	57	36	0	6	1.23
7175629--7175679	16	3.4	15	86	8	59	50	35	0	13	1.42
7177017--7177042	13	2.0	13	100	0	52	69	0	0	30	0.89
7177994--7178036	3	14.3	3	100	0	86	67	0	0	32	0.91
7178202--7178240	18	2.2	18	95	0	69	30	0	7	61	1.24
7178844--7178880	2	18.5	2	89	10	58	48	0	2	48	1.15
7181105--7181145	7	5.9	7	91	0	55	53	4	0	41	1.22
7181105--7181144	21	1.9	21	89	0	62	55	5	0	40	1.22
7181276--7181325	26	2.0	25	84	11	66	26	16	14	44	1.85
7183821--7183885	27	2.4	27	82	2	78	47	1	4	46	1.32
7184805--7184973	80	2.1	81	87	4	243	39	8	15	36	1.79
7189858--7190002	51	2.8	52	82	5	179	28	26	6	39	1.80
7192587--7192929	64	5.4	63	75	7	271	35	10	16	37	1.83
7192616--7192929	127	2.4	127	79	9	300	35	10	15	37	1.82
7193213--7193252	12	3.2	12	89	7	53	45	5	0	50	1.23
7197630--7197895	138	1.9	138	82	8	328	39	17	9	33	1.82
7197344--7198169	435	1.9	436	81	5	1017	38	13	13	34	1.84
7197767--7198512	294	2.5	295	85	3	1020	39	12	13	34	1.84
7197767--7198614	294	2.9	292	81	5	935	39	13	13	33	1.84
7202873--7202902	15	2.0	15	100	0	60	20	6	13	60	1.55
7203180--7203283	55	1.9	55	82	4	129	34	12	14	38	1.84
7206275--7206313	18	2.1	18	90	4	60	28	2	5	64	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7206435--7206470	2	18.0	2	94	0	63	52	0	0	47	1.00
7207033--7207074	6	7.0	6	97	0	57	42	0	7	50	1.30
7207033--7207076	12	3.8	12	90	3	63	40	0	6	52	1.28
7209330--7209360	16	1.9	16	93	0	53	41	0	3	54	1.16
7209641--7209688	18	2.7	18	81	9	53	31	0	2	66	1.03
7212730--7212835	49	2.2	49	83	8	128	23	17	15	43	1.87
7213050--7213103	24	2.4	22	78	6	63	40	1	0	57	1.09
7217386--7217950	281	2.0	281	99	0	1121	34	18	13	33	1.90
7217962--7218366	33	12.3	33	79	6	292	28	20	15	35	1.93
7217950--7218371	66	6.4	66	78	7	351	28	20	15	35	1.93
7217961--7218340	99	3.8	99	81	5	385	28	20	15	35	1.93
7219169--7219214	23	2.0	23	91	0	74	21	23	23	30	1.99
7219389--7219440	22	2.3	23	76	6	61	25	19	21	34	1.96
7219601--7219649	23	2.2	23	92	3	82	20	30	22	26	1.98
7219601--7219656	22	2.5	23	88	2	69	21	28	23	26	1.99
7219728--7219771	22	2.0	22	90	0	70	27	27	18	27	1.98
7219064--7219979	110	8.3	109	84	3	996	22	21	18	37	1.94
7219943--7220007	23	2.9	22	76	17	71	23	21	24	30	1.99
7220072--7220140	23	3.0	23	89	2	104	27	26	20	26	1.99
7219830--7220228	132	3.0	130	87	5	545	22	20	20	36	1.95
7220123--7220379	88	2.9	88	86	0	325	22	21	17	38	1.93
7220598--7220631	10	3.3	10	88	8	50	88	0	8	2	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7222031--7222220	16	12.2	16	70	11	81	47	26	2	22	1.64
7222037--7222129	17	5.8	17	78	13	81	49	25	1	23	1.57
7222037--7222129	32	2.9	31	79	4	114	49	25	1	23	1.57
7222055--7222116	7	8.1	7	74	13	52	51	22	1	24	1.57
7222028--7222155	64	2.0	65	83	4	161	46	27	3	22	1.67
7222251--7222281	16	1.9	16	93	0	53	45	35	0	19	1.51
7226733--7226761	15	1.9	15	100	0	58	62	10	6	20	1.50
7238420--7238685	64	4.2	62	75	9	234	34	11	13	40	1.81
7238421--7238654	64	3.7	62	77	10	240	34	10	15	40	1.81
7239065--7239284	110	2.0	110	86	3	309	28	17	16	36	1.92
7239258--7239584	159	2.1	159	81	2	370	27	15	14	41	1.86
7239537--7239686	55	2.8	55	75	6	144	28	10	13	47	1.76
7240234--7240348	60	1.9	60	91	3	187	42	10	19	27	1.83
7240705--7240856	62	2.5	61	82	3	153	32	15	16	35	1.91
7240741--7240856	60	1.9	62	85	5	164	35	16	12	35	1.87
7241757--7241793	15	2.5	15	90	0	56	62	8	8	21	1.49
7251709--7251758	20	2.3	23	76	23	70	22	8	22	48	1.76
7251716--7251761	20	2.3	20	100	0	92	19	10	19	50	1.77
7254205--7254366	63	2.6	62	75	10	159	37	11	17	33	1.86
7257341--7257408	27	2.6	27	79	11	86	47	1	5	45	1.36
7261642--7261690	25	2.0	25	91	0	80	36	8	8	46	1.63
7270854--7270907	28	1.9	28	100	0	108	31	27	0	40	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7271207--7271290	3	28.0	3	90	0	105	0	26	32	41	1.56
7271340--7271368	6	4.8	6	100	0	58	17	0	48	34	1.47
7271496--7271614	6	19.3	6	76	8	87	8	12	31	47	1.71
7272325--7272360	18	2.0	18	94	0	63	61	2	0	36	1.11
7273337--7273363	6	4.5	6	100	0	54	0	29	0	70	0.88
7276450--7276489	6	6.7	6	100	0	80	52	0	0	47	1.00
7276868--7276991	18	6.9	18	70	14	76	30	4	30	33	1.79
7277348--7277400	27	2.0	27	88	7	81	33	37	3	24	1.74
7280772--7280818	24	1.9	25	91	4	78	38	10	2	48	1.50
7281350--7281391	20	2.1	20	86	0	57	21	64	0	14	1.29
7282813--7282862	23	2.2	23	92	0	82	34	10	12	44	1.75
7283691--7283729	15	2.5	15	83	8	51	35	0	0	64	0.94
7287658--7287701	19	2.2	19	88	8	61	36	2	0	61	1.09
7287670--7287743	10	7.5	10	74	8	53	35	1	5	58	1.30
7287695--7287933	20	12.2	19	67	15	103	37	0	6	55	1.31
7287704--7287749	19	2.4	18	79	10	56	28	0	8	63	1.24
7287804--7287904	10	10.6	9	69	14	60	38	0	4	55	1.28
7287803--7287903	29	3.5	29	73	14	84	38	0	4	55	1.28
7287803--7287933	19	6.6	20	71	13	74	36	0	6	56	1.30
7287880--7287927	22	2.2	22	85	7	62	27	0	6	66	1.15
7295329--7295353	2	12.5	2	100	0	50	52	0	0	48	1.00
7303279--7303345	12	5.9	12	75	5	52	44	1	1	52	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7303275--7303346	24	3.2	24	73	11	80	47	1	1	50	1.18
7303390--7303423	6	5.7	6	96	0	59	29	0	2	67	1.05
7307313--7307360	22	2.2	22	100	0	96	52	0	0	47	1.00
7307355--7307385	8	3.8	8	95	4	53	54	0	0	45	0.99
7308759--7308822	24	2.7	24	75	2	67	56	0	0	43	0.99
7309025--7309059	10	3.4	10	88	7	52	85	2	2	8	0.79
7320073--7320187	57	2.0	57	89	1	176	38	14	20	26	1.92
7320080--7320206	57	2.2	58	80	4	139	40	14	21	22	1.90
7320566--7320604	19	2.1	19	95	0	69	25	12	10	51	1.71
7323876--7323911	8	4.6	8	93	6	65	88	0	0	11	0.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77