genome.fa.s179.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  48  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9315225--9315249	1	25.0	1	100	0	50	0	100	0	0	0.00
9318587--9318616	13	2.2	14	94	5	53	46	6	36	10	1.64
9322913--9323011	51	1.9	51	83	4	128	52	1	2	44	1.19
9323503--9323543	16	2.5	18	77	22	54	46	0	0	53	1.00
9324007--9324068	27	2.2	27	80	11	63	48	0	1	50	1.10
9324749--9324840	44	2.1	44	89	4	141	31	14	17	36	1.89
9340788--9340817	2	15.0	2	92	0	51	50	0	3	46	1.18
9341416--9341448	15	2.2	15	100	0	66	42	9	12	36	1.74
9346962--9346993	2	16.0	2	100	0	64	50	0	0	50	1.00
9347146--9347186	13	3.2	13	82	0	55	43	2	9	43	1.50
9347237--9347280	20	2.2	20	92	4	72	29	0	2	68	1.02
9349130--9349191	31	2.0	31	87	0	88	48	11	11	29	1.74
9349959--9350011	26	2.0	26	88	0	79	24	7	16	50	1.71
9353781--9353846	34	1.9	34	84	9	89	56	0	1	42	1.08
9354755--9354810	22	2.5	21	77	11	58	60	0	7	32	1.24
9355236--9355274	17	2.3	17	81	0	51	53	5	10	30	1.56
9359030--9359238	87	2.4	86	83	4	251	26	14	17	41	1.88
9359030--9359238	43	4.8	43	84	4	251	26	14	17	41	1.88
9359972--9360029	19	3.1	19	80	11	75	56	13	6	22	1.61
9359975--9360083	37	3.1	36	73	20	95	57	11	4	25	1.53
9360005--9360132	53	2.5	53	84	2	134	55	9	5	29	1.54
9360154--9360244	20	4.5	20	87	1	83	50	9	6	32	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9360166--9360244	41	2.0	41	87	2	115	49	11	6	32	1.64
9360232--9360295	32	2.0	33	81	3	76	53	7	6	32	1.55
9364336--9364388	21	2.4	23	81	12	58	20	24	30	24	1.99
9364556--9364589	17	2.1	16	94	5	59	32	0	0	67	0.91
9365060--9365133	31	2.4	31	88	6	105	22	25	22	28	1.99
9365194--9365237	19	2.3	19	84	0	52	27	27	20	25	1.99
9365202--9365238	19	1.9	19	88	0	56	29	24	18	27	1.98
9365564--9366003	153	2.8	157	91	4	730	29	14	18	38	1.90
9369632--9369706	1	75.0	1	74	0	51	85	0	12	2	0.70
9369631--9369703	10	7.0	10	78	18	78	83	0	13	2	0.75
9369617--9369681	19	3.4	19	81	14	80	84	0	10	4	0.75
9369635--9369678	17	2.6	16	86	10	61	88	0	9	2	0.59
9369631--9369706	31	2.6	29	82	12	91	84	0	13	2	0.73
9370918--9371900	41	24.0	39	91	6	1392	22	17	21	38	1.93
9370918--9371900	247	4.0	242	91	5	1502	22	17	21	38	1.93
9371908--9372025	16	7.3	16	80	7	123	87	6	0	5	0.68
9371908--9372012	22	5.0	21	80	7	115	88	6	0	4	0.62
9371909--9372012	41	2.5	41	84	10	140	88	6	0	4	0.63
9371909--9372026	22	5.6	21	80	14	72	86	6	0	6	0.71
9371908--9372024	49	2.4	49	83	11	143	87	6	0	5	0.68
9371908--9372012	1	105.0	1	77	0	102	88	6	0	4	0.62
9372128--9372186	20	3.0	20	94	0	100	18	30	28	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9372353--9372381	3	9.7	3	100	0	58	31	0	0	68	0.89
9372857--9372930	31	2.4	30	84	11	87	22	25	25	25	2.00
9373319--9373353	1	35.0	1	100	0	70	0	0	0	100	0.00
9373376--9373837	152	3.0	153	91	3	746	29	15	17	37	1.91
9374587--9374782	43	4.5	42	82	5	212	29	12	14	43	1.82
9374587--9374824	43	5.5	43	80	8	209	28	13	13	44	1.81
9375473--9375534	19	3.4	19	77	8	65	61	9	3	25	1.42
9375494--9375541	19	2.5	19	77	16	53	60	8	2	29	1.37
9375509--9375630	48	2.5	49	89	6	185	61	10	3	24	1.44
9375540--9375589	19	2.7	19	79	14	59	64	10	4	22	1.41
9375559--9375642	30	2.7	32	81	9	84	60	10	3	25	1.45
9375506--9375707	53	4.0	51	84	7	168	59	9	3	27	1.44
9375586--9375666	32	2.5	33	82	7	96	60	9	2	27	1.41
9375631--9375714	41	2.0	40	84	9	105	58	5	3	32	1.39
9375563--9375712	53	2.8	53	82	3	178	59	8	3	29	1.42
9375732--9375824	20	4.6	20	82	6	98	51	8	6	33	1.58
9381482--9381512	3	10.7	3	93	6	55	29	0	0	70	0.87
9382413--9382437	13	1.9	13	100	0	50	76	0	0	24	0.80
9387087--9387140	23	2.3	23	75	6	56	44	5	3	46	1.44
9389868--9389916	24	2.0	24	92	4	80	65	4	16	14	1.42
9395400--9395428	2	14.5	2	100	0	58	51	0	0	48	1.00
9398681--9398725	20	2.2	20	80	0	54	22	4	26	46	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9400530--9400568	19	2.1	19	85	9	53	56	0	0	43	0.99
9400985--9401042	3	19.3	3	100	0	116	67	0	0	32	0.91
9401970--9401997	13	2.2	13	100	0	56	46	28	0	25	1.53
9404119--9404171	23	2.4	22	75	9	54	45	5	3	45	1.45
9406894--9406938	23	1.9	23	90	4	72	66	4	17	11	1.38
9409562--9409591	2	15.0	2	92	0	51	46	0	3	50	1.18
9412417--9412441	2	12.5	2	100	0	50	52	0	0	48	1.00
9417577--9417615	19	2.1	19	85	9	53	56	0	0	43	0.99
9418008--9418046	12	3.2	12	88	3	60	66	20	0	12	1.24
9418048--9418102	3	18.3	3	100	0	110	67	0	0	32	0.91
9419077--9419104	13	2.2	13	100	0	56	46	28	0	25	1.53
9422977--9423064	39	2.3	38	79	13	90	44	26	3	26	1.70
9429865--9430481	334	1.8	334	100	0	1234	32	20	18	29	1.96
9435172--9435204	15	2.1	16	88	5	50	24	0	0	75	0.80
9435162--9435195	10	3.4	10	83	0	50	23	0	0	76	0.79
9435209--9435243	3	11.7	3	100	0	70	34	0	31	34	1.58
9435242--9435361	3	38.0	3	77	17	102	30	4	0	64	1.18
9435242--9435364	43	3.0	39	80	16	133	30	4	0	65	1.17
9435605--9435673	24	3.0	22	75	8	59	33	1	13	52	1.49
9436109--9436181	3	24.0	3	82	13	87	30	4	1	64	1.20
9436202--9436240	6	6.7	6	88	5	53	15	5	0	79	0.90
9436199--9436239	17	2.4	17	84	11	57	17	4	0	78	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9436278--9436366	28	3.2	28	63	15	76	37	5	16	40	1.73
9439220--9440486	161	7.8	159	73	10	715	43	13	8	33	1.74
9441053--9441079	13	2.1	13	100	0	54	14	22	7	55	1.64
9443916--9443962	21	2.2	21	77	7	51	40	21	8	29	1.83
9461671--9461717	16	3.0	16	75	12	53	72	10	8	8	1.29
9463414--9463446	17	1.9	17	88	11	50	72	6	21	0	1.05
9464142--9464210	29	2.4	28	80	7	75	55	2	5	36	1.39
9466271--9466350	29	2.7	29	77	9	83	53	1	7	37	1.37
9467767--9467850	34	2.4	34	82	7	98	61	1	2	34	1.16
9467825--9467851	13	2.1	13	100	0	54	70	0	0	29	0.88
9468704--9468747	21	2.0	22	86	4	63	43	2	0	54	1.12
9469170--9469265	30	3.2	30	83	0	102	48	2	7	41	1.42
9475947--9476017	31	2.3	31	100	0	142	57	2	0	39	1.13
9475947--9476040	31	3.0	31	89	6	109	55	4	0	40	1.19
9476009--9476051	20	2.2	20	83	4	52	55	6	0	37	1.27
9476406--9476478	27	2.9	26	80	11	73	65	13	0	20	1.26
9480449--9480485	2	18.5	2	94	0	65	51	0	0	48	1.00
9506291--9506323	12	3.0	11	87	12	50	63	0	9	27	1.24
9514730--9514767	14	2.6	15	83	8	51	52	2	0	44	1.14
9516260--9516285	2	13.0	2	100	0	52	50	0	0	50	1.00
9519454--9519593	69	2.0	68	84	4	183	40	15	13	30	1.86
9519644--9519781	29	4.8	29	74	10	131	37	13	13	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9519760--9519839	40	2.0	40	85	0	106	48	18	3	28	1.65
9519687--9519805	56	2.1	56	80	0	139	44	14	10	31	1.78
9524098--9524142	14	3.1	14	87	6	63	55	2	0	42	1.12
9524531--9524577	22	2.2	21	88	3	67	55	0	0	44	0.99
9525045--9525085	12	3.3	12	80	6	55	31	0	0	68	0.90
9525179--9525243	29	2.4	28	87	7	89	46	1	3	49	1.27
9525258--9525295	20	1.9	19	89	5	58	47	0	0	52	1.00
9530524--9530556	15	2.2	15	89	10	50	33	6	0	60	1.21
9531500--9532917	477	3.0	473	86	4	1962	42	7	10	39	1.68
9532482--9533351	434	2.0	437	88	3	1310	42	8	9	39	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77