genome.fa.s179.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  76  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15476055--15476146	32	2.8	33	79	9	91	47	1	0	51	1.07
15476064--15476146	18	4.3	21	68	26	58	45	0	0	54	0.99
15476152--15476229	31	2.6	29	75	13	77	44	2	2	50	1.29
15476361--15476414	22	2.5	21	76	14	56	42	0	0	57	0.98
15476368--15476417	26	1.9	26	84	8	66	44	0	0	56	0.99
15480668--15480730	30	2.1	29	85	8	83	34	3	1	60	1.22
15483495--15483544	2	24.5	2	87	4	73	46	4	2	48	1.32
15483582--15483888	165	1.9	165	90	0	488	42	6	4	47	1.48
15483967--15484002	18	2.0	18	94	0	63	25	5	5	63	1.38
15485132--15485186	15	3.6	15	80	2	56	49	0	1	49	1.11
15487378--15487553	22	8.2	22	70	12	107	47	3	10	38	1.55
15487450--15487574	66	1.9	65	80	6	146	46	3	10	40	1.54
15487764--15487802	20	2.0	20	90	10	62	61	2	0	35	1.10
15487967--15487996	11	2.7	11	89	0	51	40	0	16	43	1.48
15487450--15488363	22	42.0	22	66	12	123	47	5	9	36	1.60
15488196--15488367	44	3.9	44	73	10	143	47	7	8	36	1.63
15488196--15488393	22	9.0	22	72	9	91	45	8	9	36	1.65
15488636--15488904	22	12.1	22	70	15	142	48	6	9	34	1.62
15488985--15489069	22	3.8	22	81	6	82	58	2	8	30	1.40
15489088--15489160	22	3.3	22	80	0	83	50	5	8	35	1.55
15489206--15489329	22	5.6	22	74	9	92	46	5	6	41	1.53
15489176--15489319	44	3.2	44	79	9	150	47	6	5	40	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15489176--15489326	66	2.3	66	81	4	162	47	5	5	41	1.52
15489202--15489328	66	1.9	66	85	3	175	46	6	6	40	1.54
15489805--15489891	21	4.2	20	78	7	79	48	6	9	35	1.62
15489890--15490052	80	2.0	80	83	3	202	47	6	4	41	1.50
15490136--15490170	2	17.5	2	100	0	70	48	0	0	51	1.00
15490615--15490708	47	2.0	47	100	0	188	34	14	12	38	1.85
15492965--15492990	13	2.0	13	100	0	52	23	15	23	38	1.92
15495195--15495288	29	3.2	29	82	5	93	50	1	1	47	1.15
15516675--15516728	24	2.2	25	83	3	65	53	3	3	38	1.36
15517517--15517593	39	2.1	37	83	11	95	25	7	6	59	1.49
15528513--15528573	28	2.1	30	81	6	72	40	6	3	49	1.45
15528536--15528771	129	1.8	130	83	0	312	40	9	7	43	1.64
15530158--15530193	18	2.0	18	88	0	54	36	0	22	41	1.54
15543298--15543334	17	2.1	19	85	10	51	24	5	21	48	1.71
15561421--15562154	246	3.0	246	97	0	1387	37	17	16	28	1.92
15564181--15564244	32	2.0	31	84	3	83	46	3	0	50	1.17
15564268--15564331	22	2.9	22	73	15	69	46	1	0	51	1.10
15566942--15566985	19	2.4	18	76	3	52	54	4	13	27	1.58
15572867--15572916	14	3.5	15	76	12	52	30	4	0	66	1.10
15573371--15573447	24	3.2	24	77	14	70	59	0	1	38	1.06
15575603--15575659	27	2.1	27	83	0	69	43	0	42	14	1.44
15575600--15575658	30	2.0	30	86	0	82	44	0	42	13	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15582825--15583198	187	2.0	190	94	1	655	39	22	5	32	1.78
15583782--15583826	22	2.0	23	91	4	74	46	0	2	51	1.13
15583747--15583832	6	14.3	6	73	13	61	48	1	2	47	1.22
15584023--15584065	15	2.9	15	85	0	59	46	2	0	51	1.13
15591083--15591113	2	15.5	2	100	0	62	51	0	48	0	1.00
15591653--15591695	20	2.3	19	88	8	61	67	2	0	30	1.03
15592404--15592454	24	2.1	24	100	0	102	29	17	15	37	1.91
15594195--15594219	2	12.5	2	100	0	50	52	0	0	48	1.00
15594823--15594849	2	13.5	2	100	0	54	51	0	0	48	1.00
15594956--15595013	30	1.9	31	85	3	82	34	3	0	62	1.12
15605278--15605310	11	2.8	12	86	9	50	30	3	0	66	1.06
15605944--15606002	26	2.4	25	86	10	79	55	1	0	42	1.09
15605944--15605977	10	3.2	10	84	15	50	58	0	0	41	0.98
15612125--15612160	18	1.9	19	88	5	56	52	0	0	47	1.00
15613182--15613224	16	2.7	16	77	0	50	37	0	2	60	1.10
15613212--15613262	21	2.5	21	90	9	79	47	1	0	50	1.12
15614713--15614777	19	3.3	20	71	14	64	41	0	4	53	1.21
15615692--15615722	2	15.5	2	100	0	62	0	48	0	51	1.00
15616814--15616872	29	2.0	31	86	6	86	45	0	1	52	1.10
15616810--15616894	31	3.0	27	76	17	84	48	0	1	50	1.08
15616963--15616998	17	2.2	16	90	5	54	30	0	0	69	0.89
15618024--15618062	8	4.9	8	87	0	60	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15618275--15618333	24	2.5	24	82	0	73	61	5	5	28	1.39
15623925--15624109	92	2.0	92	98	0	361	28	6	13	51	1.66
15627552--15627578	2	13.5	2	100	0	54	48	0	0	51	1.00
15638963--15639009	19	2.5	19	76	16	53	36	0	2	61	1.08
15645576--15645612	17	2.2	17	90	0	56	51	0	2	45	1.15
15645648--15645729	30	2.8	29	83	1	101	36	6	1	56	1.32
15648812--15648881	36	1.9	36	100	0	140	45	14	28	11	1.79
15654349--15654442	44	2.2	43	83	9	111	53	3	0	43	1.17
15655538--15655575	19	2.0	20	89	5	60	60	0	0	39	0.97
15656088--15656130	13	3.2	14	80	6	54	34	0	0	65	0.93
15656229--15656293	20	3.4	20	70	23	59	36	6	1	55	1.34
15660365--15660425	31	2.0	31	87	6	88	42	3	1	52	1.27
15660438--15660494	29	2.0	29	89	3	89	61	3	0	35	1.13
15663675--15663702	13	2.2	13	100	0	56	42	28	14	14	1.84
15663715--15663800	42	2.0	43	93	4	147	31	19	32	16	1.94
15664570--15664628	28	2.1	28	93	0	100	33	18	8	38	1.81
15666960--15666998	20	1.9	20	84	5	51	56	2	2	38	1.27
15673991--15674194	110	1.8	111	93	3	358	43	12	8	36	1.72
15677410--15677469	26	2.3	27	83	11	79	36	5	3	55	1.38
15686539--15686579	21	2.0	21	85	9	57	29	19	4	46	1.71
15696356--15696478	62	2.0	62	90	4	196	50	9	9	30	1.67
15698186--15698215	2	15.0	2	92	0	51	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15698187--15698223	10	3.7	10	92	0	56	54	2	0	43	1.14
15700225--15700254	2	15.0	2	92	0	51	46	0	3	50	1.18
15700219--15700250	14	2.3	14	94	0	55	43	3	6	46	1.44
15703829--15703870	2	21.0	2	85	0	57	42	0	7	50	1.30
15705671--15705826	52	3.0	52	79	0	168	41	7	23	27	1.82
15706398--15706463	25	2.6	25	85	0	87	39	6	31	22	1.79
15706761--15706905	52	2.8	53	82	4	188	42	7	22	28	1.80
15709427--15709471	15	3.0	15	87	9	65	55	0	0	44	0.99
15709902--15709928	11	2.5	11	100	0	54	92	0	7	0	0.38
15710938--15711009	30	2.4	31	83	9	94	45	34	1	18	1.58
15710942--15711010	16	4.6	15	77	10	70	43	34	1	20	1.61
15711012--15711073	14	4.2	15	80	13	67	51	33	0	14	1.43
15711010--15711073	30	2.1	30	85	5	85	51	32	0	15	1.44
15710966--15711076	51	2.2	51	82	9	129	47	36	0	16	1.47
15711010--15711062	16	3.4	16	80	17	58	49	33	0	16	1.47
15713667--15713694	13	2.2	13	100	0	56	21	39	14	25	1.91
15717919--15718208	145	2.0	145	98	0	562	35	21	16	26	1.94
15721916--15721994	27	2.9	28	88	3	117	34	40	7	17	1.78
15736787--15736871	34	2.5	33	75	3	80	49	7	7	36	1.57
15737987--15738031	2	23.0	2	90	4	56	51	6	0	42	1.28
15741176--15741200	2	12.5	2	100	0	50	0	48	0	52	1.00
15741200--15741236	2	19.0	2	94	5	67	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15741634--15741661	11	2.5	11	100	0	56	0	7	0	92	0.37
15742125--15742150	2	13.0	2	100	0	52	50	0	0	50	1.00
15750472--15750502	15	2.1	15	93	0	53	35	16	25	22	1.94
15751100--15751128	2	14.5	2	100	0	58	51	0	48	0	1.00
15752801--15752886	30	2.9	29	82	3	82	45	8	2	44	1.46
15769882--15769918	16	2.2	17	90	4	58	43	2	5	48	1.40
15773305--15773376	29	2.4	29	83	2	81	37	0	4	58	1.18
15773354--15773387	17	1.9	18	88	5	52	47	0	2	50	1.16
15773841--15773890	24	2.1	24	92	0	82	38	10	6	46	1.62
15773980--15774010	16	2.0	16	93	6	55	54	0	0	45	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77