genome.fa.s179.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  12  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1907964--1908008	20	2.4	19	85	10	65	60	0	31	8	1.28
1907966--1908003	20	1.9	20	94	0	67	57	0	31	10	1.32
1909609--1909658	23	2.2	23	85	3	66	34	2	16	48	1.57
1911703--1911749	3	15.7	3	100	0	94	31	0	0	68	0.90
1915267--1915455	63	3.0	63	99	0	371	40	6	22	30	1.79
1916060--1916102	2	21.5	2	87	0	50	55	39	0	4	1.20
1917858--1917891	14	2.4	14	90	9	52	14	0	5	79	0.91
1917835--1917912	23	3.2	24	76	14	70	14	6	5	74	1.19
1921987--1922031	16	2.8	16	78	15	56	80	6	13	0	0.91
1921993--1922065	29	2.6	28	79	18	80	80	5	10	2	0.97
1921992--1922065	28	2.6	29	80	8	80	81	5	10	2	0.96
1923052--1923269	69	3.2	69	85	0	283	30	20	11	37	1.87
1923239--1923367	69	1.9	69	83	6	172	37	16	12	33	1.86
1923585--1924087	120	4.2	119	78	6	358	19	20	13	46	1.84
1924327--1924375	14	3.4	14	88	8	64	79	4	6	10	1.03
1927651--1927685	16	2.1	17	89	5	54	57	2	31	8	1.44
1929165--1929198	3	11.3	3	100	0	68	32	0	0	67	0.91
1930733--1930782	18	2.8	19	79	11	61	60	6	0	34	1.21
1932861--1933469	328	1.8	333	86	5	898	50	7	15	26	1.71
1935823--1935881	30	2.0	30	83	12	77	15	25	0	59	1.36
1935274--1935910	328	1.9	328	87	4	933	26	15	8	50	1.71
1939542--1939575	3	11.0	3	93	6	59	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1939544--1939575	16	2.0	16	100	0	64	68	0	0	31	0.90
1941020--1941054	16	2.1	17	89	5	54	8	31	2	57	1.44
1944308--1944343	14	2.6	14	90	0	54	13	5	0	80	0.88
1944647--1945081	240	1.8	240	80	3	534	45	14	21	19	1.85
1944584--1945119	120	4.5	121	76	5	435	45	13	21	19	1.84
1945277--1945316	17	2.4	17	95	0	71	32	10	32	25	1.89
1945438--1945633	69	2.8	69	88	4	279	38	12	19	29	1.88
1946618--1946675	22	2.7	20	82	15	71	6	6	3	82	0.93
1946618--1946675	10	5.4	11	76	15	59	6	6	3	82	0.93
1956917--1956975	3	19.7	3	100	0	118	67	0	0	32	0.91
1959362--1959409	23	2.2	23	85	10	66	8	18	4	68	1.31
1960666--1960703	20	1.9	20	88	0	58	15	23	0	60	1.35
1961994--1962047	14	4.0	14	76	13	51	16	0	35	48	1.47
1963488--1963530	13	3.5	13	81	9	54	9	4	60	25	1.47
1963881--1963982	36	2.9	36	80	4	118	49	10	22	17	1.78
1963950--1964795	110	7.7	109	81	4	702	42	15	23	18	1.88
1964238--1964406	35	4.6	35	69	17	94	44	16	21	17	1.87
1963950--1964804	221	3.9	218	77	7	723	42	15	23	18	1.88
1979460--1979512	21	2.5	20	75	22	54	13	0	33	52	1.40
1979537--1979600	30	2.1	30	82	5	76	21	0	31	46	1.52
1979632--1979707	38	2.0	38	84	5	100	15	0	38	46	1.47
1980720--1980756	16	2.1	19	85	14	53	0	16	2	81	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1981888--1982025	39	3.7	36	69	11	91	46	15	20	18	1.84
1981742--1981991	111	2.3	111	80	1	286	45	16	20	18	1.86
1981958--1982396	110	4.0	109	76	6	327	45	15	20	18	1.85
1982191--1982383	36	5.3	36	71	9	106	46	14	19	19	1.84
1983436--1983475	17	2.4	16	92	8	71	5	0	7	87	0.66
1985609--1985653	17	2.8	16	83	6	56	68	2	8	20	1.27
1985632--1985712	23	3.5	22	71	17	58	69	2	6	22	1.23
1985596--1985661	17	4.1	16	74	16	55	65	1	7	25	1.28
1985669--1985740	28	2.5	28	84	10	85	69	0	2	27	1.02
1985669--1985743	6	11.0	6	75	19	51	70	0	2	26	1.00
1985868--1985926	26	2.3	26	82	5	66	5	18	1	74	1.09
1986689--1986748	32	2.0	32	81	15	74	48	3	0	48	1.18
1987255--1987307	18	3.1	17	74	15	54	9	20	0	69	1.15
1987282--1987328	15	3.4	14	77	13	53	4	27	0	68	1.08
1987873--1987939	23	2.9	22	75	18	64	10	7	2	79	1.04
1987874--1987932	16	3.8	15	71	6	55	10	6	3	79	1.03
1988763--1988800	19	2.1	18	90	5	58	50	2	0	47	1.15
1989189--1989240	25	2.1	25	96	0	95	34	13	15	36	1.87
1989311--1989339	3	9.7	3	100	0	58	68	0	0	31	0.89
1990360--1990385	12	2.2	12	100	0	52	53	0	0	46	1.00
2000191--2000235	22	2.0	22	83	8	56	60	0	0	40	0.97
2002032--2002102	36	1.9	37	85	2	99	22	33	15	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2008374--2008444	35	2.0	35	83	5	90	43	14	11	30	1.80
2009416--2009507	41	2.2	41	96	0	166	35	6	15	42	1.73
2012283--2012342	21	2.7	22	78	19	54	66	0	1	31	1.01
2017119--2017170	24	2.1	26	89	7	81	57	7	13	21	1.61
2017315--2017356	22	1.9	22	85	0	57	45	14	11	28	1.80
2023487--2023539	13	4.0	13	80	11	63	0	41	0	58	0.98
2023498--2023538	20	2.0	20	100	0	82	0	39	0	60	0.96
2025201--2025253	20	2.7	21	80	11	58	50	15	9	24	1.73
2029550--2029824	145	1.9	145	81	3	338	39	11	15	33	1.84
2029542--2029854	145	2.2	145	80	4	337	39	11	15	33	1.83
2029790--2029918	64	2.0	64	100	0	258	27	10	19	41	1.85
2031364--2031418	20	2.8	20	80	5	58	50	14	7	27	1.69
2033437--2033477	3	13.7	3	100	0	82	65	0	0	34	0.93
2039176--2039213	19	1.9	20	89	10	60	2	5	2	89	0.64
2039175--2039214	20	1.9	20	90	10	62	2	5	2	90	0.62
2039676--2039712	19	1.9	19	88	0	56	70	0	0	29	0.88
2039750--2039802	25	2.2	24	82	3	61	60	0	0	39	0.97
2039750--2039802	12	4.3	13	80	4	58	60	0	0	39	0.97
2039787--2039872	28	3.2	27	68	14	70	44	3	0	52	1.18
2040010--2040131	61	2.0	61	98	0	235	27	9	15	46	1.77
2045134--2045196	3	21.0	3	100	0	126	33	0	0	66	0.92
2046122--2046167	22	2.0	23	83	4	58	41	0	10	47	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2049936--2049987	14	3.9	14	77	10	54	73	3	0	23	1.00
2050229--2050282	22	2.5	22	84	6	74	35	29	18	16	1.93
2050630--2050667	20	2.0	18	90	10	58	31	0	0	68	0.90
2061214--2061244	13	2.4	13	94	0	53	32	0	0	67	0.91
2074207--2074536	120	2.7	121	87	1	464	33	23	16	26	1.96
2076084--2076144	31	2.0	31	100	0	122	27	9	16	45	1.79
2076494--2077084	44	13.5	44	81	4	606	46	16	13	23	1.83
2076539--2077076	174	3.1	174	83	4	672	47	16	13	23	1.82
2076496--2077059	218	2.6	216	80	5	609	46	16	13	23	1.82
2077456--2077505	18	2.8	18	78	0	64	42	14	18	26	1.87
2077747--2077837	41	2.2	41	83	11	107	35	12	18	34	1.88
2077900--2077938	15	2.6	15	91	0	60	53	12	12	20	1.71
2077779--2078046	148	1.8	148	81	1	340	36	14	16	33	1.88
2077916--2078025	40	2.8	40	75	0	112	36	14	17	31	1.90
2078005--2078180	94	1.9	94	86	0	253	35	13	18	32	1.90
2077925--2078343	229	1.8	228	84	5	567	34	14	18	32	1.91
2078088--2078343	135	1.9	135	81	1	316	34	14	19	31	1.92
2081913--2081955	9	4.6	9	82	5	50	2	16	0	81	0.79
2087238--2087310	28	2.6	28	88	0	83	53	12	6	27	1.63
2087238--2087297	28	2.1	28	96	0	111	55	11	3	30	1.52
2087645--2087971	119	2.7	121	86	5	437	32	22	14	30	1.94
2099424--2099462	18	2.2	18	85	0	51	17	0	28	53	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2114801--2114834	17	2.0	17	94	0	59	55	0	20	23	1.43
2115345--2115387	21	2.0	21	95	0	77	25	4	20	48	1.69
2115399--2115459	31	2.0	31	83	6	79	31	13	22	32	1.92
2116290--2116355	31	2.1	31	85	0	87	34	18	19	27	1.95
2118054--2118100	17	2.9	16	78	9	51	68	2	27	2	1.13
2122921--2122996	32	2.4	32	81	0	89	7	25	22	44	1.79
2125822--2125862	19	2.2	19	100	0	82	43	0	4	51	1.23
2131214--2131243	15	2.0	15	93	0	51	56	6	0	36	1.26
2132384--2132425	18	2.7	15	77	22	50	57	2	33	7	1.39
2132410--2132456	21	2.2	21	80	0	58	48	0	40	10	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77