genome.fa.s179.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  9  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1323624--1323659	3	12.0	3	100	0	72	33	0	0	66	0.92
1324426--1324457	15	2.2	15	94	5	57	68	6	0	25	1.12
1324468--1324525	23	2.8	21	83	16	77	70	6	1	20	1.19
1324478--1324544	28	2.4	29	80	12	77	71	8	1	17	1.19
1324421--1324537	6	22.2	5	75	13	53	68	9	0	21	1.23
1324513--1324563	24	2.1	24	82	7	59	80	5	3	9	1.01
1325662--1326111	40	11.4	40	73	11	315	43	16	13	27	1.85
1325635--1325802	80	2.1	80	85	3	230	43	17	12	26	1.84
1325737--1325875	72	1.9	72	85	2	190	46	14	14	24	1.81
1325638--1325995	192	1.9	192	85	2	495	43	17	13	26	1.86
1326093--1326132	21	1.9	21	100	0	80	45	10	7	37	1.66
1326057--1326172	61	1.9	61	84	7	155	42	16	12	28	1.85
1326115--1326368	40	6.3	40	80	2	190	40	15	14	29	1.87
1325973--1326249	141	2.0	141	80	8	314	40	14	14	30	1.86
1326112--1326294	80	2.3	80	81	5	210	40	13	14	31	1.85
1325891--1326329	221	2.0	221	84	3	580	41	15	13	29	1.85
1326115--1326336	120	1.9	120	82	5	288	41	13	14	30	1.85
1326117--1326368	120	2.1	120	80	4	267	40	15	14	29	1.87
1326360--1326811	204	2.2	205	86	2	606	35	18	14	31	1.91
1339386--1339429	15	3.1	15	87	12	58	68	6	0	25	1.14
1339380--1339448	15	4.7	15	77	15	54	69	7	0	23	1.13
1339420--1339495	26	3.1	25	80	14	79	75	6	2	15	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1339380--1339476	6	18.4	5	74	14	56	71	7	1	20	1.16
1339454--1339513	11	5.3	11	82	11	52	80	5	6	8	1.03
1339810--1339859	20	2.5	20	83	3	66	38	20	20	22	1.94
1340002--1340055	26	2.0	26	85	3	72	27	9	9	53	1.63
1343078--1343110	17	1.9	17	93	0	57	30	15	6	48	1.69
1344123--1344161	21	2.0	20	90	10	62	51	5	5	38	1.46
1344848--1344898	24	2.1	25	82	13	63	33	5	5	54	1.48
1344881--1344923	23	1.9	23	90	4	70	44	0	6	48	1.29
1347561--1347590	6	4.8	6	95	4	51	0	0	16	83	0.65
1349537--1349581	23	2.0	22	83	12	56	48	0	0	51	1.00
1350302--1350375	29	2.7	27	76	12	78	51	2	0	45	1.15
1351051--1351121	35	2.0	35	94	0	124	16	11	21	50	1.76
1351397--1351473	28	2.7	30	76	11	72	37	1	3	57	1.26
1352059--1352106	23	2.1	22	88	11	71	35	2	0	62	1.07
1352059--1352104	21	2.1	23	88	8	69	34	2	0	63	1.07
1352068--1352117	10	4.9	10	75	20	50	30	0	0	70	0.88
1352088--1352118	16	1.9	16	93	0	53	22	0	0	77	0.77
1352110--1352161	24	2.0	26	85	10	72	48	1	0	50	1.12
1353019--1353061	18	2.4	18	82	14	54	46	6	0	46	1.30
1356060--1356085	12	2.2	12	100	0	52	23	0	0	76	0.78
1356123--1356163	13	3.1	13	82	3	55	17	4	0	78	0.93
1356339--1356374	19	2.0	19	89	10	58	72	5	8	13	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1358117--1358242	58	2.2	58	78	4	139	51	17	10	20	1.74
1358210--1358428	121	1.8	120	84	5	300	46	16	11	25	1.81
1359956--1359997	12	3.5	12	86	0	57	42	23	14	19	1.87
1365597--1365639	5	8.6	5	85	10	61	20	44	34	0	1.52
1365597--1365651	15	3.5	15	85	9	67	20	43	34	1	1.62
1365716--1366313	156	3.8	156	93	4	999	29	14	18	38	1.90
1369547--1369574	1	28.0	1	100	0	56	100	0	0	0	0.00
1369975--1370040	16	3.9	17	74	16	66	80	0	12	7	0.91
1369957--1370016	20	3.1	20	75	22	65	76	0	16	6	0.99
1370004--1370040	8	4.8	8	90	3	58	78	0	10	10	0.97
1371232--1371499	42	6.5	42	88	7	338	23	17	21	37	1.94
1371232--1371499	83	3.2	82	87	8	382	23	17	21	37	1.94
1371239--1371496	124	2.1	123	87	5	369	23	17	22	36	1.94
1371522--1371548	1	27.0	1	100	0	54	100	0	0	0	0.00
1371651--1371709	20	3.0	20	94	0	100	18	30	28	22	1.97
1372006--1372038	12	2.9	12	86	13	52	21	0	0	78	0.75
1372353--1372425	31	2.4	31	90	4	112	21	26	24	27	2.00
1372487--1372531	19	2.4	19	92	0	72	24	31	22	22	1.99
1372751--1372793	5	8.6	5	85	10	61	20	44	34	0	1.52
1372751--1372805	15	3.5	15	85	9	67	20	43	34	1	1.62
1372813--1372838	1	26.0	1	100	0	52	0	0	0	100	0.00
1372874--1373474	157	3.8	156	96	1	1058	28	14	17	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1379154--1379221	35	1.9	35	87	0	100	50	0	1	48	1.10
1381147--1381189	20	2.0	20	86	8	59	25	2	2	69	1.12
1381743--1381792	21	2.5	20	81	18	59	48	0	0	52	1.00
1381746--1381787	19	2.2	19	87	12	59	50	0	0	50	1.00
1383989--1384061	26	3.1	22	75	19	67	38	0	2	58	1.12
1385835--1385873	16	2.4	16	86	0	51	76	5	0	17	0.96
1385844--1385880	16	2.4	16	86	4	58	72	5	0	21	1.04
1387143--1387199	3	19.0	3	100	0	114	66	0	0	33	0.92
1387771--1388009	121	2.0	119	82	9	290	44	16	12	25	1.84
1389574--1389631	26	2.2	27	81	9	66	10	20	3	65	1.38
1395485--1395554	6	12.0	6	70	11	56	77	2	7	12	1.09
1395506--1395559	16	3.2	16	80	17	65	75	5	3	14	1.12
1399361--1399400	3	13.3	3	100	0	80	32	0	0	67	0.91
1408570--1408603	10	3.4	10	87	0	50	82	0	8	8	0.85
1409114--1409335	35	6.4	34	67	7	106	22	21	7	48	1.74
1409115--1409337	70	3.2	70	79	5	195	22	21	6	48	1.73
1409734--1409819	19	4.7	18	74	8	57	76	5	5	11	1.13
1409734--1409773	18	2.2	19	86	4	55	75	10	0	15	1.05
1409777--1409818	16	2.5	16	88	7	57	83	0	11	4	0.79
1411209--1411263	5	9.8	6	77	18	57	85	0	14	0	0.60
1411207--1411263	22	2.6	22	86	13	82	85	0	14	0	0.59
1411207--1411265	23	2.6	23	89	7	86	86	0	13	0	0.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1411208--1411273	30	2.2	30	83	5	80	83	0	15	1	0.72
1411207--1411266	14	4.1	14	81	10	68	86	0	13	0	0.57
1411304--1411370	22	3.0	22	82	2	80	64	2	10	22	1.39
1412252--1412506	8	33.2	8	69	17	123	50	30	1	16	1.56
1412242--1412346	31	3.5	31	84	8	119	50	29	1	18	1.57
1412451--1412493	15	2.9	15	86	6	52	55	25	0	18	1.42
1412243--1412501	23	11.2	22	69	13	114	50	30	2	16	1.58
1412537--1412581	15	3.0	15	87	9	65	51	22	6	20	1.70
1412570--1412653	24	3.6	23	75	10	71	51	22	3	22	1.64
1421002--1421029	2	14.0	2	100	0	56	50	0	0	50	1.00
1423753--1423829	35	2.2	35	85	0	100	40	28	12	18	1.87
1427258--1427295	2	19.0	2	100	0	76	0	50	0	50	1.00
1428672--1428698	13	2.1	13	100	0	54	22	0	7	70	1.12
1430717--1430746	2	15.0	2	100	0	60	50	0	0	50	1.00
1431570--1431613	22	2.0	23	82	13	56	54	0	0	45	0.99
1431578--1431635	27	2.2	26	79	14	64	51	0	1	46	1.11
1431841--1431886	23	1.9	25	86	8	69	56	17	10	15	1.67
1440723--1440765	18	2.3	19	84	4	52	46	0	0	53	1.00
1441619--1441653	17	2.1	17	100	0	70	40	5	17	37	1.73
1444026--1444055	11	2.7	11	94	0	51	70	3	0	26	1.03
1444127--1444172	18	2.5	18	82	3	56	54	0	0	45	0.99
1444126--1444221	30	2.9	33	70	17	85	52	0	1	46	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1444235--1444278	23	2.0	23	86	13	65	65	0	0	34	0.93
1444311--1444371	21	2.9	21	80	14	63	42	0	0	57	0.98
1453688--1453718	2	15.5	2	93	0	53	54	0	0	45	0.99
1453721--1453754	2	17.0	2	100	0	68	50	0	50	0	1.00
1456685--1456829	71	2.0	71	97	0	272	27	20	19	33	1.96
1456931--1456963	2	16.5	2	93	0	57	51	0	0	48	1.00
1461559--1461594	2	18.0	2	100	0	72	0	50	0	50	1.00
1461597--1461627	2	15.5	2	93	0	53	45	0	0	54	0.99
1469998--1470029	16	2.1	15	94	5	55	0	18	6	75	1.01
1470898--1470964	22	2.9	22	74	14	64	58	0	0	41	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77