genome.fa.s179.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  31  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6249588--6249636	24	2.0	24	100	0	98	30	32	24	12	1.92
6249594--6249641	24	2.0	23	92	4	78	29	35	25	10	1.89
6250371--6250455	44	1.9	44	90	4	136	31	15	10	42	1.81
6257240--6257284	22	2.0	22	87	8	65	24	8	2	64	1.34
6257240--6257298	22	2.7	21	80	12	57	27	8	3	61	1.41
6257697--6257773	26	2.9	26	80	5	75	55	1	3	38	1.26
6257730--6257780	26	2.0	26	84	0	66	60	5	0	33	1.21
6257733--6257799	18	3.7	18	78	9	64	59	5	1	32	1.31
6257828--6257867	18	2.4	17	91	8	64	62	5	0	32	1.17
6257907--6257961	25	2.2	25	83	0	65	60	0	3	36	1.15
6258168--6258291	10	12.8	10	66	20	50	27	2	3	66	1.19
6258212--6258285	20	4.0	18	71	13	62	27	1	2	68	1.10
6258241--6258302	31	2.1	31	82	11	76	29	1	3	66	1.17
6259426--6259456	2	15.5	2	100	0	62	51	0	0	48	1.00
6261736--6261764	13	2.1	14	93	6	51	55	20	0	24	1.44
6262867--6262917	23	2.3	23	80	10	61	39	5	7	47	1.57
6263110--6263147	18	2.1	18	85	9	51	47	2	15	34	1.60
6265044--6265089	21	2.2	21	84	3	58	65	4	0	30	1.12
6266135--6266306	73	2.5	70	85	5	215	18	11	20	49	1.78
6268666--6268717	21	2.3	22	83	9	61	57	21	3	17	1.55
6271576--6271624	24	2.0	24	84	7	64	57	0	2	40	1.10
6271723--6271872	56	2.7	56	80	6	164	47	8	13	30	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6284368--6284565	96	2.1	97	85	4	267	29	8	14	47	1.73
6298739--6298805	29	2.3	29	79	5	73	50	8	14	25	1.72
6300660--6300684	2	12.5	2	100	0	50	48	0	0	52	1.00
6300823--6300943	64	1.9	64	84	6	165	41	7	7	43	1.61
6300843--6300961	64	1.9	63	83	11	154	42	6	7	43	1.59
6301380--6301405	13	2.0	13	100	0	52	53	0	0	46	1.00
6301754--6301811	29	2.0	30	93	3	100	48	1	0	50	1.11
6302125--6302167	21	2.0	22	86	13	63	34	13	0	51	1.42
6302287--6302338	16	3.2	16	81	13	54	67	0	0	32	0.91
6302294--6302338	15	2.9	16	90	6	67	66	0	0	33	0.92
6302455--6302566	21	5.5	21	72	20	78	48	0	0	50	1.13
6302532--6302599	26	2.7	26	86	6	95	52	0	0	47	1.00
6302637--6302732	15	6.3	15	68	13	61	43	1	3	52	1.24
6302648--6302672	7	3.6	7	100	0	50	52	0	0	48	1.00
6308317--6308392	37	2.1	37	90	5	118	26	13	11	48	1.76
6314129--6314159	15	2.1	15	93	0	53	25	19	19	35	1.95
6315982--6316147	83	2.0	83	93	0	287	44	20	10	24	1.83
6318168--6318224	30	2.0	28	82	6	69	36	1	1	59	1.18
6321736--6321771	18	1.9	18	88	5	54	52	0	0	47	1.00
6331196--6331262	35	1.9	35	96	0	125	34	11	19	34	1.88
6331838--6331868	2	15.5	2	100	0	62	51	0	48	0	1.00
6335024--6335057	17	2.1	17	94	5	61	55	0	2	41	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6337516--6337550	12	2.8	12	91	4	52	51	2	5	40	1.40
6338012--6338086	34	2.2	35	80	2	89	56	6	5	32	1.48
6339592--6339661	35	2.0	35	91	0	113	50	20	8	21	1.74
6341691--6341722	3	10.7	3	100	0	64	31	0	0	68	0.90
6343073--6343136	6	10.7	6	77	9	60	65	0	0	34	0.93
6343073--6343136	20	3.6	18	73	14	60	65	0	0	34	0.93
6343082--6343142	16	3.8	16	77	12	63	65	0	0	34	0.93
6343077--6343167	42	2.2	40	86	9	130	62	0	0	37	0.95
6343072--6343143	12	6.5	11	73	22	53	63	0	0	36	0.94
6343983--6344076	47	2.0	47	93	0	161	39	14	9	36	1.79
6347175--6347233	30	2.0	30	93	0	100	50	13	15	20	1.77
6351097--6351167	23	3.0	23	72	15	56	60	4	2	32	1.30
6353920--6354516	266	2.2	267	80	8	610	47	10	19	22	1.80
6356320--6356383	28	2.4	28	78	19	75	48	0	1	50	1.10
6357134--6357172	16	2.5	16	87	4	62	69	10	0	20	1.17
6360849--6361352	248	2.0	250	95	0	913	35	16	14	33	1.89
6364147--6364191	23	1.9	23	86	4	63	46	2	0	51	1.13
6379049--6379079	8	3.8	8	91	8	53	90	0	0	9	0.46
6379048--6379079	9	3.7	9	91	8	57	90	0	0	9	0.45
6382399--6382452	23	2.2	24	80	6	65	25	1	1	70	1.07
6385727--6385793	33	2.0	33	94	0	116	35	19	2	41	1.67
6386723--6386752	2	15.5	2	93	6	53	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6386752--6386794	2	21.5	2	85	0	50	6	0	39	53	1.28
6388686--6388716	13	2.4	13	100	0	62	48	6	9	35	1.62
6392404--6392455	16	3.3	16	78	10	54	63	1	5	28	1.28
6401824--6401858	14	2.5	14	100	0	70	54	0	25	20	1.45
6401941--6401967	7	3.9	7	100	0	54	40	0	44	14	1.46
6403127--6403187	8	8.1	7	73	12	50	39	0	1	59	1.08
6403118--6403186	15	4.4	16	75	17	65	37	0	2	59	1.12
6403245--6403311	18	3.8	18	86	3	84	31	0	2	65	1.07
6403653--6403702	18	3.0	17	83	11	68	80	0	0	20	0.72
6403645--6403702	27	2.1	27	81	12	66	75	0	1	22	0.89
6403654--6403703	8	6.0	8	82	17	57	78	0	0	22	0.76
6403653--6403703	17	3.0	17	78	18	61	78	0	0	21	0.75
6403957--6404023	25	2.6	26	85	7	91	49	4	2	43	1.38
6404174--6404236	20	3.2	20	81	0	81	31	19	23	25	1.98
6404242--6404279	20	1.9	20	88	0	58	47	23	0	28	1.52
6409442--6409485	21	2.1	21	83	8	54	38	22	11	27	1.88
6412128--6413084	314	3.0	309	81	7	1124	33	11	12	41	1.80
6413635--6413701	28	2.4	29	87	5	93	25	2	20	50	1.62
6413688--6413740	25	2.1	25	89	0	79	18	3	28	49	1.65
6415355--6415399	21	2.1	21	84	8	56	28	0	6	64	1.19
6417042--6417308	124	2.1	125	84	4	351	32	14	13	39	1.85
6417042--6417308	64	4.3	64	73	10	203	32	14	13	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6420439--6420470	2	17.0	2	87	12	50	50	0	0	50	1.00
6426756--6426804	24	2.0	24	96	0	89	34	22	12	30	1.91
6429889--6429928	19	2.1	19	86	9	55	52	5	7	35	1.51
6432632--6432682	2	26.5	2	77	15	54	50	1	0	47	1.12
6437978--6438043	8	7.8	8	72	12	51	33	1	1	63	1.13
6438027--6438079	28	2.0	26	85	7	70	45	7	0	47	1.31
6438083--6438169	37	2.3	38	76	11	90	37	0	1	60	1.04
6438136--6438205	33	2.2	31	83	14	90	32	1	1	64	1.11
6438531--6438571	19	2.3	19	83	8	50	58	7	2	31	1.38
6438523--6438591	35	1.9	35	82	2	84	60	5	2	30	1.34
6439723--6439882	77	2.1	77	90	2	250	36	8	21	33	1.85
6444665--6444694	15	2.0	15	93	0	51	33	6	30	30	1.83
6449645--6449684	20	2.0	20	90	0	62	35	2	0	62	1.09
6454225--6454263	20	2.0	20	94	0	69	12	12	2	71	1.24
6454228--6454271	20	2.2	20	88	4	63	15	11	2	70	1.26
6454954--6455110	52	3.0	52	85	3	192	25	25	9	39	1.86
6455406--6455454	24	2.0	24	88	7	73	18	36	10	34	1.85
6455508--6455592	31	2.7	31	92	0	134	22	23	24	29	1.99
6456077--6456233	52	3.0	52	85	3	192	25	25	9	39	1.86
6458389--6458430	2	21.0	2	95	0	75	52	0	0	47	1.00
6459799--6459986	62	3.1	60	80	9	202	43	3	11	42	1.57
6460111--6460352	131	1.8	130	78	5	272	43	6	7	42	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6460422--6460576	61	2.6	61	79	12	176	39	3	14	41	1.65
6460577--6460736	58	2.8	57	76	11	148	38	6	14	41	1.71
6464067--6464125	31	1.9	31	96	0	109	35	3	25	35	1.73
6464411--6464440	15	2.0	15	100	0	60	40	13	26	20	1.89
6467394--6467569	92	1.9	92	80	14	209	48	1	0	50	1.12
6467461--6467617	17	8.3	18	68	27	62	50	0	0	48	1.10
6467545--6467592	25	1.9	25	87	8	71	50	0	0	50	1.00
6467491--6467621	41	3.2	40	76	18	103	51	0	0	47	1.11
6470199--6470232	12	2.8	12	90	0	50	29	8	0	61	1.26
6480175--6480212	17	2.2	17	90	9	60	50	2	0	47	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77