genome.fa.s179.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  62  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12446743--12446912	22	7.2	22	72	15	108	55	1	2	40	1.20
12446771--12446913	15	9.4	15	72	19	109	55	1	2	41	1.20
12446796--12446911	13	8.7	13	69	22	55	54	1	2	41	1.24
12446754--12446912	37	4.4	37	72	15	118	55	1	1	40	1.18
12446754--12446907	11	13.2	11	66	25	52	55	1	1	41	1.19
12452762--12452858	48	2.0	48	91	0	158	43	13	7	36	1.72
12460538--12460567	1	30.0	1	93	0	51	0	3	0	96	0.21
12462665--12462700	18	1.9	19	88	5	56	25	13	8	52	1.68
12466974--12467013	13	3.1	13	82	10	55	37	0	2	60	1.11
12469771--12470051	22	12.8	22	68	5	97	49	4	8	37	1.55
12469772--12469873	44	2.3	43	80	12	109	53	2	5	37	1.40
12470079--12470173	22	4.4	22	69	11	70	49	4	10	35	1.57
12470080--12470238	65	2.4	66	82	7	173	49	4	8	37	1.54
12470141--12470493	22	16.3	21	68	15	73	48	5	7	37	1.57
12470147--12470286	43	3.2	43	79	5	122	47	6	9	37	1.62
12470338--12470455	41	2.7	43	76	7	123	52	3	5	38	1.40
12470266--12470474	44	4.8	42	70	11	127	49	5	7	37	1.54
12470539--12470589	22	2.4	22	86	3	77	49	11	5	33	1.64
12471070--12471160	43	2.1	43	78	15	100	49	3	6	40	1.45
12471070--12471170	42	2.4	42	80	11	109	47	3	7	40	1.51
12471250--12471300	22	2.4	22	83	3	59	37	5	11	45	1.65
12471312--12471355	24	1.9	22	86	9	61	54	2	13	29	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12471391--12471568	22	8.1	22	73	9	94	47	4	6	41	1.50
12471448--12471622	44	4.0	45	81	3	176	46	3	7	42	1.48
12471449--12471622	88	2.0	88	83	2	224	46	3	7	42	1.49
12471556--12471618	22	2.9	22	80	0	81	46	4	7	41	1.54
12471589--12471626	19	2.0	19	85	10	51	55	2	2	39	1.28
12471939--12472022	21	4.0	21	76	16	75	46	9	7	36	1.64
12471962--12472029	21	3.2	20	78	15	59	48	8	4	38	1.54
12471934--12472029	42	2.2	44	87	5	135	46	9	6	37	1.61
12476737--12476770	2	17.5	2	93	6	61	52	0	0	47	1.00
12480119--12480157	20	2.0	20	85	5	53	38	0	2	58	1.12
12480168--12480226	31	1.9	31	92	0	100	37	1	5	55	1.32
12480241--12480278	12	2.9	13	88	7	51	44	0	2	52	1.14
12485759--12485856	42	2.4	41	78	11	110	44	3	29	22	1.68
12485870--12485948	33	2.4	33	80	4	79	45	6	29	18	1.74
12489514--12489582	27	2.5	27	88	2	93	26	13	7	53	1.65
12489521--12489602	28	3.0	28	82	7	87	28	13	4	53	1.60
12489897--12489964	21	3.2	21	64	12	57	35	23	2	38	1.70
12489881--12489964	43	2.0	43	100	0	168	32	23	3	40	1.72
12491352--12491378	13	2.1	13	100	0	54	37	7	14	40	1.74
12491806--12491879	19	3.8	19	76	15	71	48	0	1	50	1.09
12491918--12491962	22	2.0	22	87	8	65	42	0	0	57	0.98
12498414--12498475	30	2.1	29	81	3	70	27	8	0	64	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12499851--12499981	68	1.9	68	98	0	253	27	29	3	39	1.74
12501924--12501959	17	2.2	17	90	5	56	61	8	8	22	1.51
12502150--12502187	17	2.2	18	86	9	53	2	23	0	73	0.95
12503291--12503315	13	1.9	13	100	0	50	24	0	4	72	1.02
12511894--12511945	3	18.0	3	76	7	54	65	1	3	28	1.21
12511891--12511945	23	2.5	22	82	8	69	65	1	5	27	1.25
12512039--12512067	3	9.7	3	100	0	58	68	0	0	31	0.89
12512204--12512254	14	3.8	13	73	17	50	52	33	0	13	1.41
12514211--12514245	13	2.7	13	87	12	54	88	2	5	2	0.68
12514211--12514247	14	2.7	14	87	4	58	86	2	8	2	0.76
12515513--12515584	4	18.0	4	75	5	65	22	22	6	48	1.74
12515534--12515577	16	2.8	16	92	0	79	20	18	9	52	1.72
12517259--12517296	15	2.5	15	79	12	51	84	2	2	10	0.83
12519732--12519806	28	2.7	28	85	0	105	25	22	16	36	1.94
12519787--12520102	33	9.6	33	71	12	177	32	19	14	33	1.92
12519787--12520105	66	4.8	65	74	12	224	32	20	14	32	1.93
12520084--12520171	33	2.6	34	82	5	126	26	26	18	29	1.98
12520308--12520365	28	2.1	28	90	0	89	20	24	17	37	1.93
12520783--12521106	75	4.3	75	76	2	202	15	23	15	45	1.83
12520443--12521104	37	17.9	36	73	10	272	14	22	15	46	1.83
12520984--12521104	38	3.2	37	82	5	109	15	23	14	46	1.83
12521038--12521184	37	4.0	37	76	5	109	15	22	14	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12521377--12521441	24	3.2	20	75	23	64	76	7	0	15	0.99
12521383--12521423	13	3.3	13	80	13	59	78	12	0	9	0.98
12521383--12521436	24	2.2	24	87	6	74	77	9	0	12	0.98
12523070--12523106	3	12.7	3	91	5	58	70	2	0	27	1.01
12523382--12523411	11	2.7	11	100	0	60	46	20	0	33	1.51
12532832--12532882	20	2.5	20	78	6	59	50	0	1	47	1.12
12536629--12536715	42	2.1	42	100	0	174	33	9	6	50	1.61
12536629--12536695	22	3.1	22	65	8	66	34	8	7	49	1.62
12540329--12540372	21	2.1	21	95	4	81	63	9	13	13	1.51
12545682--12546625	333	2.8	332	87	2	1342	37	12	14	35	1.84
12554948--12555008	17	3.6	17	93	4	97	62	0	0	37	0.96
12558845--12558923	36	2.2	37	95	2	142	17	15	15	51	1.76
12559694--12559736	21	2.0	21	90	0	68	25	2	23	48	1.62
12559964--12560004	17	2.4	17	91	0	64	31	4	14	48	1.65
12562386--12562411	6	4.3	6	100	0	52	53	0	0	46	1.00
12566122--12566146	13	1.9	13	100	0	50	0	68	0	32	0.90
12566144--12566183	2	20.5	2	94	5	73	0	52	0	47	1.00
12566141--12566183	21	2.0	21	100	0	86	0	53	0	46	1.00
12566146--12566184	19	2.1	19	100	0	78	0	53	0	46	1.00
12569836--12569870	4	8.8	4	87	12	54	25	0	0	74	0.82
12569891--12569934	20	2.2	20	92	4	72	47	0	2	50	1.13
12569888--12569937	19	2.7	19	85	11	68	50	0	2	48	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12569919--12569980	32	1.9	33	87	9	92	54	0	0	45	0.99
12578548--12578598	14	3.7	14	77	15	61	50	0	1	47	1.12
12578548--12578598	27	1.9	26	88	4	75	50	0	1	47	1.12
12579076--12579197	65	1.9	65	80	10	142	52	30	4	13	1.58
12579384--12579517	65	2.1	65	81	5	155	50	31	5	12	1.62
12580004--12580047	20	2.2	20	83	0	52	54	29	0	15	1.42
12580594--12580655	28	2.2	28	86	11	83	38	32	14	14	1.86
12580604--12580662	14	4.2	14	77	12	59	40	32	10	16	1.82
12580644--12580685	22	1.9	22	95	0	75	47	35	4	11	1.61
12580819--12580881	22	2.9	22	92	0	99	49	28	1	20	1.58
12580991--12581179	36	5.3	36	71	7	118	44	29	4	21	1.73
12581000--12581262	7	37.0	7	67	16	78	46	29	3	20	1.67
12581348--12581384	14	2.5	15	86	8	58	48	27	5	18	1.70
12581444--12581473	15	2.0	15	93	0	51	46	30	0	23	1.52
12581502--12581540	18	2.2	18	86	4	53	58	25	2	12	1.47
12582384--12582607	62	3.7	60	88	5	328	34	13	7	44	1.72
12585648--12586260	41	15.0	41	90	3	941	37	22	17	23	1.94
12585648--12586260	81	7.5	81	90	5	912	37	22	17	23	1.94
12585648--12586260	122	5.0	122	91	2	928	37	22	17	23	1.94
12590726--12590892	59	2.8	60	85	6	223	34	15	8	41	1.77
12590941--12590989	25	2.0	25	84	8	64	69	10	6	14	1.35
12593013--12593054	18	2.4	18	88	4	59	14	33	7	45	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12593294--12593327	3	11.0	3	93	6	59	64	0	2	32	1.08
12593325--12593375	24	2.1	25	78	10	61	66	0	7	25	1.18
12593335--12593391	24	2.4	23	83	11	71	64	1	7	26	1.28
12593403--12593437	9	3.9	9	96	0	61	82	0	0	17	0.66
12593403--12593440	5	8.2	5	83	16	55	81	0	0	18	0.69
12593396--12593440	14	3.2	14	87	6	65	80	2	0	17	0.82
12593396--12593438	9	4.7	9	91	2	59	81	2	0	16	0.79
12593361--12593467	54	2.0	54	82	10	130	69	1	2	26	1.13
12593404--12593470	14	4.9	14	72	15	52	71	0	1	26	0.94
12596259--12596332	37	2.0	37	84	5	96	67	8	4	20	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77