genome.fa.s179.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  23  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4392158--4392531	199	1.9	198	94	2	662	45	9	7	37	1.65
4393189--4393273	31	2.9	29	75	11	84	29	7	8	55	1.56
4394285--4394343	31	1.9	31	82	6	75	33	10	13	42	1.78
4396788--4396847	27	2.2	25	78	16	66	56	0	0	43	0.99
4399890--4399919	3	10.0	3	92	0	51	70	0	0	30	0.88
4403632--4403700	35	2.0	36	83	11	90	26	10	18	44	1.81
4405148--4405206	11	5.5	11	70	11	50	16	13	10	59	1.61
4407240--4407274	17	2.0	18	94	5	63	31	0	0	68	0.90
4409316--4409361	24	1.9	24	86	8	67	36	23	0	39	1.55
4409627--4410048	41	10.5	41	81	9	399	43	19	9	27	1.82
4409701--4409761	31	2.0	31	100	0	122	40	19	6	32	1.77
4409732--4410049	122	2.6	122	85	6	419	43	20	9	26	1.82
4410379--4410630	79	3.2	78	89	2	371	33	15	11	38	1.84
4410518--4410736	21	10.6	21	68	15	125	37	17	9	35	1.82
4410640--4410724	43	2.0	43	83	4	109	37	16	10	35	1.83
4411978--4412020	19	2.2	20	80	19	56	9	18	0	72	1.11
4413301--4413325	10	2.5	10	100	0	50	16	0	0	84	0.63
4413661--4413726	19	3.6	18	78	15	64	0	18	3	78	0.87
4413678--4413743	34	1.9	35	84	9	91	1	21	3	74	1.04
4413661--4413736	17	4.4	16	72	18	55	1	19	2	76	0.98
4415154--4415201	16	3.1	16	80	17	64	52	10	0	37	1.36
4426025--4426078	25	2.2	24	83	12	65	38	5	7	48	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4426938--4426981	7	6.3	7	80	19	56	84	0	2	13	0.73
4428249--4428284	16	2.1	17	90	10	56	22	2	0	75	0.94
4428301--4428349	22	2.3	20	86	6	62	20	6	0	73	1.04
4428669--4428712	17	2.6	17	85	7	54	72	2	4	20	1.13
4431892--4431949	28	2.1	27	84	9	73	46	3	5	44	1.42
4431908--4431962	28	2.0	29	82	13	71	38	7	3	50	1.48
4436395--4436435	19	2.1	19	86	4	55	46	4	7	41	1.53
4446280--4446451	84	2.0	84	84	2	220	33	15	15	36	1.88
4446510--4446551	21	2.0	21	85	0	57	35	21	11	30	1.90
4446320--4446606	84	3.4	84	78	4	276	33	13	15	36	1.87
4449034--4449074	22	2.0	22	85	9	59	26	0	9	63	1.25
4449315--4449371	25	2.3	24	87	6	78	38	1	12	47	1.51
4453474--4453510	15	2.5	15	95	0	65	40	0	29	29	1.57
4453871--4453908	18	2.1	18	90	0	58	26	26	18	28	1.98
4454123--4454164	18	2.3	19	80	16	52	26	2	11	59	1.45
4456132--4456228	11	8.6	11	70	20	67	26	0	24	48	1.51
4456783--4456859	22	3.5	21	79	13	59	62	0	1	36	1.04
4456787--4456825	17	2.2	19	86	9	55	61	0	0	38	0.96
4456802--4456860	22	2.7	22	84	10	68	66	0	1	32	1.02
4470035--4470081	23	2.0	23	84	8	60	53	4	0	42	1.20
4476319--4476352	10	3.3	10	87	4	50	2	11	0	85	0.71
4477075--4477116	13	3.2	13	83	6	50	71	4	9	14	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4478962--4479005	21	2.0	22	91	4	72	61	15	9	13	1.56
4481831--4481938	54	2.0	54	98	0	207	52	11	10	25	1.68
4482802--4482844	19	2.3	19	95	0	77	46	9	11	32	1.72
4485858--4485883	1	26.0	1	100	0	52	0	0	0	100	0.00
4492970--4493053	42	2.0	42	90	0	132	33	11	8	46	1.71
4494951--4494983	16	2.0	17	88	5	50	42	0	0	57	0.98
4495261--4495304	17	2.6	17	77	0	52	25	9	0	65	1.21
4496418--4496598	84	2.2	84	79	5	195	33	13	23	29	1.93
4500319--4500378	27	2.2	28	87	3	86	53	16	3	26	1.59
4504384--4504435	19	2.9	17	81	18	54	1	13	1	82	0.84
4511085--4511137	22	2.4	23	87	9	83	47	0	0	52	1.00
4511085--4511135	11	4.6	11	77	0	57	47	0	0	52	1.00
4512895--4512954	29	2.1	29	87	0	84	33	13	16	36	1.88
4513817--4513858	16	2.7	15	85	7	57	50	2	0	47	1.14
4513827--4513876	26	2.0	25	84	4	64	50	4	0	46	1.20
4516989--4517031	20	2.1	20	83	12	52	51	0	18	30	1.47
4518857--4518898	22	1.9	22	100	0	84	21	7	23	47	1.75
4520599--4520641	21	2.0	21	86	0	59	23	6	18	51	1.70
4520641--4520691	16	3.2	16	97	0	93	31	15	11	41	1.83
4522003--4522037	17	2.1	17	94	0	61	17	31	5	45	1.71
4531024--4531430	184	2.2	184	87	2	568	36	16	6	39	1.76
4534086--4534191	18	6.1	18	74	6	101	27	3	32	36	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4534087--4534189	51	2.0	49	81	9	116	27	3	33	35	1.75
4534537--4534570	3	11.3	3	93	0	59	32	38	0	29	1.58
4542039--4542100	32	1.9	32	96	0	115	41	16	16	25	1.88
4546729--4546768	12	3.3	12	82	0	53	27	0	40	32	1.57
4547096--4547166	18	3.8	18	72	17	54	32	26	7	33	1.83
4551024--4551065	20	2.1	20	90	0	66	47	7	16	28	1.73
4552140--4552185	8	5.8	8	86	0	65	39	0	0	60	0.97
4552137--4552185	24	2.0	24	92	0	80	40	0	0	59	0.98
4552148--4552203	16	3.7	16	81	11	64	46	0	0	53	1.00
4552458--4552503	22	2.1	22	84	8	58	52	0	17	30	1.45
4552916--4552950	16	2.1	17	89	5	54	65	2	0	31	1.07
4553908--4553939	3	10.7	3	93	0	55	31	0	3	65	1.08
4560414--4560559	64	2.2	65	83	7	172	23	9	14	52	1.71
4564090--4564117	2	14.0	2	100	0	56	50	0	0	50	1.00
4569711--4569753	15	2.8	15	85	3	59	20	18	6	53	1.67
4579401--4579452	20	2.6	20	90	0	77	44	1	1	51	1.23
4586981--4587010	14	2.1	15	93	6	53	46	3	0	50	1.18
4590390--4590414	1	25.0	1	100	0	50	100	0	0	0	0.00
4591243--4591276	2	17.0	2	100	0	68	50	0	50	0	1.00
4592657--4592686	10	3.0	10	95	0	51	50	16	0	33	1.46
4602639--4602675	18	2.1	18	89	0	56	16	5	0	78	0.93
4603080--4603104	11	2.3	11	100	0	50	80	0	20	0	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4603276--4603324	17	2.9	16	79	8	53	77	4	6	12	1.09
4612129--4612178	18	2.8	17	84	6	64	80	2	6	12	0.98
4612129--4612178	17	2.8	19	80	20	63	80	2	6	12	0.98
4613773--4613818	23	2.0	23	91	0	74	19	19	6	54	1.66
4620156--4620185	2	15.0	2	92	0	51	46	0	0	53	1.00
4620582--4621436	428	2.0	427	94	0	1496	33	11	19	34	1.88
4624206--4624261	15	3.6	15	75	13	51	41	0	1	57	1.09
4644586--4645068	33	14.8	33	82	3	521	33	15	20	30	1.94
4644586--4645068	65	7.4	66	83	3	557	33	15	20	30	1.94
4644586--4645068	98	4.9	98	81	4	528	33	15	20	30	1.94
4644648--4645068	229	1.8	229	85	3	596	33	15	20	29	1.94
4646008--4646045	19	2.0	20	89	5	60	63	0	31	5	1.17
4647728--4647784	21	2.7	21	75	5	62	47	1	0	50	1.11
4648674--4648789	56	2.0	56	90	3	178	47	8	21	22	1.78
4653556--4653607	20	2.5	21	78	6	70	71	7	11	9	1.32
4653545--4653626	25	3.2	25	71	10	76	74	4	9	10	1.21
4653614--4653685	22	3.4	22	81	9	87	69	2	4	23	1.19
4653631--4653821	4	47.5	4	67	16	58	65	4	4	25	1.30
4653610--4653716	14	7.4	14	70	20	62	67	2	3	26	1.21
4653817--4653854	19	1.9	19	89	5	58	81	2	2	13	0.90
4653800--4653867	20	3.5	17	75	20	55	76	5	1	16	1.05
4654061--4654228	42	4.1	40	87	6	185	36	23	16	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4654073--4654223	42	3.6	41	87	4	194	36	23	15	24	1.94
4655206--4655286	8	10.0	8	82	12	103	11	13	0	75	1.05
4655221--4655253	10	3.5	10	84	16	52	9	9	0	81	0.87
4665694--4666026	118	2.8	115	89	5	490	35	13	7	43	1.73
4665694--4666027	59	5.7	58	85	5	442	35	13	7	43	1.73
4666062--4666139	6	13.7	6	71	15	58	78	1	6	14	1.01
4666074--4666204	17	7.7	17	69	13	67	75	4	3	16	1.10
4666062--4666127	29	2.3	28	78	14	73	78	1	6	13	1.00
4666074--4666127	18	3.1	18	83	2	74	81	1	3	12	0.91
4666162--4666209	4	11.8	4	80	4	51	79	4	0	16	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77