genome.fa.s179.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  55  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10896024--10896305	58	4.7	58	84	6	352	43	8	13	34	1.74
10896192--10896299	33	3.3	33	65	21	82	48	6	11	34	1.65
10897420--10897467	23	2.0	24	88	4	71	31	20	22	25	1.98
10897582--10897622	19	2.0	22	86	13	61	58	14	7	19	1.59
10898316--10898350	18	1.9	18	88	0	52	37	0	8	54	1.31
10898611--10898647	18	2.1	18	90	10	58	64	0	0	35	0.94
10898954--10899310	194	1.8	193	95	0	651	36	12	14	36	1.84
10899785--10899826	16	2.5	17	88	7	59	76	19	0	4	0.96
10900448--10900487	21	2.0	20	86	13	57	47	2	0	50	1.14
10904287--10904320	6	5.8	6	93	3	52	91	8	0	0	0.43
10904857--10904907	23	2.3	22	83	6	59	29	29	19	21	1.98
10905033--10905179	43	3.4	43	80	7	172	29	17	19	34	1.95
10905201--10905277	21	3.7	20	78	11	73	29	15	15	38	1.89
10904917--10905287	151	2.4	153	85	2	471	28	18	18	34	1.95
10904914--10905258	65	5.3	65	72	12	224	28	18	18	35	1.94
10904872--10905299	43	9.9	43	73	10	164	28	19	18	33	1.95
10905088--10905299	108	2.0	108	88	1	318	27	19	18	33	1.96
10904966--10905299	22	15.4	22	70	9	139	28	19	18	33	1.96
10905376--10905417	22	1.9	22	95	0	75	21	21	26	30	1.98
10905483--10906219	49	15.0	49	88	3	1029	28	11	25	34	1.91
10907557--10907627	23	3.0	23	89	2	106	30	18	23	26	1.97
10908474--10908508	18	1.9	18	88	0	52	37	0	8	54	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10908769--10908805	18	2.1	18	90	10	58	64	0	0	35	0.94
10908993--10909021	12	2.5	12	94	5	51	68	0	0	31	0.89
10909110--10909465	194	1.8	193	94	1	633	36	12	14	36	1.84
10918993--10919044	18	2.8	18	72	16	52	40	1	0	57	1.10
10919038--10919067	14	2.2	14	94	5	53	43	3	6	46	1.46
10919051--10919091	19	2.1	20	86	4	57	43	0	2	53	1.13
10919048--10919094	20	2.3	21	82	10	62	44	0	2	53	1.12
10921702--10921752	24	2.2	23	86	10	68	41	9	19	29	1.84
10925672--10925713	19	2.2	19	91	0	66	40	4	16	38	1.70
10940278--10940303	3	8.7	3	100	0	52	30	0	0	69	0.89
10941911--10941962	16	3.4	16	76	10	63	40	0	0	59	0.97
10943449--10943482	18	1.9	17	88	5	50	58	0	2	38	1.13
10945454--10945491	15	2.3	18	86	13	55	36	2	0	60	1.11
10947380--10947477	51	1.9	51	93	0	169	42	8	22	26	1.81
10947377--10947488	51	2.2	51	86	1	161	41	8	24	25	1.82
10954874--10954949	30	2.5	31	79	12	95	42	5	2	50	1.39
10955209--10955280	37	1.9	37	84	15	96	52	1	1	44	1.18
10955209--10955272	19	3.3	19	74	12	60	50	0	1	48	1.10
10955237--10955290	21	2.6	19	78	16	54	53	1	1	42	1.22
10957781--10957858	28	2.6	28	84	8	84	52	3	0	43	1.19
10957806--10957877	28	2.5	29	82	8	85	50	5	0	44	1.25
10959076--10959117	2	21.0	2	100	0	84	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10962520--10962552	3	11.0	3	93	0	57	63	0	33	3	1.10
10963358--10963393	3	12.0	3	100	0	72	66	0	0	33	0.92
10964567--10964681	30	3.8	29	83	8	124	50	0	6	41	1.35
10964587--10964718	30	4.4	30	81	9	128	55	2	3	38	1.31
10969419--10969496	32	2.4	31	79	12	86	47	2	0	50	1.15
10984381--10984431	23	2.2	24	82	10	61	47	3	3	45	1.40
10986897--10986923	13	2.1	13	100	0	54	55	7	22	14	1.64
10995145--10995413	15	17.2	15	69	24	100	42	1	2	54	1.22
10995112--10995395	20	13.8	21	67	21	106	40	1	2	55	1.24
10995112--10995393	18	17.0	17	70	19	154	40	1	2	55	1.24
10995346--10995413	33	2.1	32	83	8	84	41	1	0	57	1.08
10998427--10998500	35	2.1	35	84	0	94	47	9	10	32	1.71
11002858--11002978	64	1.9	63	85	8	165	41	14	10	33	1.80
11003209--11003347	64	2.2	63	80	6	154	41	10	14	34	1.79
11003215--11003336	64	1.9	63	83	5	156	39	9	15	36	1.79
11003227--11003666	209	2.1	208	82	7	518	33	12	17	35	1.88
11009856--11009930	18	4.3	18	75	9	57	33	4	9	53	1.52
11009909--11010008	3	34.7	3	80	9	102	28	1	2	69	1.06
11009880--11009938	16	3.9	15	80	14	61	33	1	8	55	1.40
11010355--11010398	20	2.2	20	84	8	54	27	2	20	50	1.60
11010437--11010479	22	2.0	22	86	8	63	13	6	25	53	1.65
11010869--11010902	4	8.8	4	93	6	61	23	0	0	76	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11015882--11015915	17	1.9	18	88	5	52	23	20	5	50	1.70
11016894--11016999	55	1.9	55	82	0	131	22	23	13	40	1.89
11017578--11017655	3	27.0	3	78	12	65	34	2	3	58	1.30
11017566--11017607	18	2.3	18	92	8	68	40	0	9	50	1.35
11019904--11019933	15	2.0	15	93	0	51	63	0	0	36	0.95
11019994--11020044	18	2.8	18	74	11	50	50	0	0	49	1.00
11020028--11020103	12	6.6	12	72	15	54	50	2	0	47	1.15
11035074--11035107	18	1.9	17	88	5	50	0	38	2	58	1.13
11035355--11035381	2	13.5	2	100	0	54	51	0	0	48	1.00
11038005--11038046	14	3.0	14	79	10	50	64	2	0	33	1.07
11040784--11040817	3	11.3	3	87	0	50	38	0	2	58	1.13
11040799--11040887	23	3.8	23	85	5	99	52	0	1	46	1.07
11042990--11043020	7	4.4	7	95	0	53	19	0	0	80	0.71
11045139--11045166	2	14.0	2	100	0	56	0	50	0	50	1.00
11048935--11049050	59	2.0	59	96	0	214	20	14	22	42	1.89
11051028--11051060	2	16.5	2	100	0	66	48	0	0	51	1.00
11052703--11052747	22	2.0	22	86	0	63	42	0	4	53	1.21
11053740--11053774	16	2.2	16	89	0	52	25	5	0	68	1.11
11054163--11054199	15	2.5	15	95	4	67	37	5	8	48	1.56
11055217--11055283	27	2.4	27	80	11	75	47	2	2	46	1.33
11059241--11059287	20	2.4	21	82	13	64	38	0	0	61	0.96
11059376--11059409	16	2.1	16	94	0	59	29	23	8	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11060940--11060995	25	2.3	25	84	3	69	53	1	0	44	1.11
11062117--11062817	354	2.0	354	84	3	930	33	16	28	22	1.95
11065470--11065536	22	2.9	24	76	17	70	37	4	0	58	1.19
11065484--11065540	21	2.8	20	78	7	60	36	1	0	61	1.07
11066000--11066042	22	2.0	21	86	4	59	48	4	13	32	1.63
11070546--11070664	60	2.0	60	100	0	238	34	6	3	55	1.43
11072387--11072432	23	2.1	22	84	8	58	34	2	0	63	1.07
11075861--11075917	30	1.9	30	96	0	105	43	8	8	38	1.67
11079529--11079578	8	6.2	8	80	0	55	36	4	14	46	1.63
11079526--11079584	20	3.0	20	79	0	73	35	5	15	44	1.68
11080182--11080228	21	2.2	21	85	7	60	27	0	2	70	0.99
11080180--11080216	16	2.3	16	90	0	56	21	0	0	78	0.75
11089208--11089232	13	1.9	13	100	0	50	52	0	0	48	1.00
11089257--11089307	26	2.0	26	84	0	66	29	1	21	47	1.62
11089580--11089613	16	2.1	16	88	0	50	26	0	2	70	1.01
11090772--11090804	1	33.0	1	100	0	66	100	0	0	0	0.00
11095023--11095170	60	2.5	59	84	1	188	39	9	6	44	1.62
11095101--11095234	72	1.9	70	83	6	171	41	11	5	41	1.65
11095172--11095382	61	3.5	63	82	11	250	37	13	4	44	1.65
11095171--11095406	61	4.0	60	78	13	179	36	12	5	45	1.66
11096919--11097480	85	6.6	85	82	5	611	43	14	19	21	1.87
11096919--11097480	171	3.3	170	82	4	631	43	14	19	21	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11097659--11097775	34	3.5	34	76	2	101	40	5	14	39	1.71
11097832--11097894	17	3.8	17	70	4	56	46	7	19	26	1.77
11099182--11099215	14	2.4	14	85	0	50	14	8	0	76	1.01
11103173--11103582	59	6.9	58	80	6	423	37	8	5	49	1.55
11103173--11103583	119	3.5	117	79	8	449	37	8	5	48	1.56
11103191--11103571	178	2.1	177	85	3	516	37	8	5	48	1.57
11103982--11104037	29	1.9	29	81	0	67	35	26	7	30	1.83
11110951--11110987	2	18.5	2	88	0	56	56	0	0	43	0.99
11125458--11125514	18	3.1	19	80	7	64	21	0	5	73	1.02
11125461--11125532	30	2.4	30	90	6	110	22	0	5	72	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77