genome.fa.s179.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  20  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3696014--3696041	4	7.0	4	100	0	56	25	0	25	50	1.50
3697562--3697611	3	16.7	3	100	0	100	66	0	0	34	0.92
3697800--3697826	2	13.5	2	100	0	54	51	0	0	48	1.00
3704381--3704412	17	1.9	16	93	6	55	59	0	0	40	0.97
3719456--3719493	8	4.8	8	90	0	58	15	0	18	65	1.27
3719456--3719493	16	2.4	16	100	0	76	15	0	18	65	1.27
3720289--3720315	4	6.8	4	100	0	54	22	0	0	77	0.76
3721406--3721458	18	3.1	16	76	15	52	9	1	7	81	0.96
3721609--3721687	21	4.0	20	72	18	67	34	5	10	50	1.58
3733195--3733230	16	2.2	16	100	0	72	22	0	11	66	1.22
3735123--3735161	17	2.3	17	86	8	53	7	0	7	84	0.77
3735326--3735404	21	4.0	20	72	18	67	34	5	10	50	1.58
3745674--3745745	21	3.9	18	77	16	76	44	0	1	54	1.08
3745650--3745736	39	2.2	38	86	8	113	44	1	1	52	1.15
3745682--3745725	22	2.0	22	91	8	72	47	0	0	52	1.00
3745910--3745966	19	2.9	19	82	10	53	43	3	1	50	1.29
3745935--3746001	19	3.3	19	77	10	62	50	2	1	44	1.26
3745935--3745987	19	2.7	20	85	5	63	49	3	1	45	1.31
3746087--3746143	26	2.2	25	84	9	71	52	1	1	43	1.21
3752561--3752594	12	2.8	12	90	0	50	11	14	11	61	1.56
3754236--3754265	12	2.6	11	90	10	51	63	3	0	33	1.11
3754230--3754270	20	2.0	21	85	9	57	60	4	0	34	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3758134--3758275	45	3.2	45	78	2	151	35	16	21	26	1.94
3758166--3758242	23	3.4	21	72	12	64	35	14	25	24	1.93
3759630--3759681	11	4.5	11	75	17	52	3	13	1	80	0.93
3764955--3765007	17	3.1	17	78	10	63	71	3	13	11	1.26
3765967--3765999	17	1.9	17	88	11	50	66	3	3	27	1.21
3773485--3773520	16	2.2	16	100	0	72	22	0	11	66	1.22
3775414--3775457	17	2.6	17	85	7	54	6	2	6	84	0.86
3775616--3775694	21	4.0	20	72	18	67	34	5	10	50	1.58
3785880--3785951	21	3.9	18	77	16	76	44	0	1	54	1.08
3785856--3785942	39	2.2	38	86	8	113	44	1	1	52	1.15
3785888--3785931	22	2.0	22	91	8	72	47	0	0	52	1.00
3786087--3786156	21	3.6	19	76	16	63	38	2	2	55	1.29
3786141--3786207	19	3.3	19	77	10	62	50	2	1	44	1.26
3786141--3786193	19	2.7	20	85	5	63	49	3	1	45	1.31
3786294--3786350	26	2.2	25	84	9	71	52	1	1	43	1.21
3788327--3788381	22	2.6	22	94	5	96	47	23	16	12	1.81
3789129--3789154	13	2.0	13	100	0	52	53	15	7	23	1.67
3794410--3794453	10	4.5	10	81	16	56	31	0	2	65	1.05
3794410--3794453	20	2.2	20	88	4	63	31	0	2	65	1.05
3794479--3794526	10	4.5	11	82	10	55	64	2	0	33	1.05
3798284--3798475	67	2.9	66	77	4	197	35	14	21	27	1.93
3798432--3798563	45	2.9	45	77	5	140	34	15	19	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3798602--3798663	22	2.7	23	80	5	81	30	11	27	30	1.91
3798509--3798679	67	2.5	68	75	0	173	30	15	23	29	1.96
3799016--3799050	18	1.9	18	88	0	52	40	14	22	22	1.90
3799171--3799206	17	2.0	19	89	10	58	33	19	2	44	1.65
3799814--3799850	5	7.2	5	87	6	56	0	16	0	83	0.64
3799817--3799850	16	2.1	16	94	0	59	0	14	0	85	0.60
3799821--3799863	16	2.6	16	81	3	50	2	20	0	76	0.89
3799814--3799864	21	2.4	21	86	0	66	1	19	0	78	0.85
3801608--3801634	3	9.0	3	100	0	54	33	0	0	66	0.92
3802331--3802368	20	1.9	20	94	0	67	31	26	18	23	1.97
3802819--3803414	59	9.9	58	83	8	685	45	8	12	33	1.72
3802820--3803400	57	9.7	58	81	10	654	45	8	13	33	1.73
3803239--3803365	67	1.9	68	88	4	195	48	7	12	32	1.68
3807865--3807917	17	3.1	17	78	10	63	71	3	13	11	1.26
3808861--3808893	17	1.9	17	88	11	50	66	3	3	27	1.21
3819346--3819460	59	1.9	61	87	3	171	42	6	5	46	1.51
3824267--3824342	38	2.0	38	97	0	143	32	23	14	28	1.94
3825285--3825318	16	2.2	15	94	5	59	73	0	0	26	0.83
3830039--3830081	18	2.4	18	85	14	63	51	0	2	46	1.13
3830201--3830236	16	2.2	16	90	0	54	33	5	0	61	1.19
3830307--3830361	19	2.9	19	74	12	51	54	0	0	45	0.99
3830324--3830374	17	2.9	17	78	18	52	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3830638--3830667	7	4.1	7	91	8	51	26	40	0	33	1.57
3830637--3830667	15	2.1	15	100	0	62	25	38	0	35	1.56
3836738--3836794	19	3.0	19	79	5	62	64	0	26	8	1.22
3837842--3837905	30	2.1	30	82	5	76	43	6	14	35	1.70
3839674--3839742	31	2.2	32	82	12	81	44	2	1	50	1.25
3840282--3840353	29	2.4	30	88	6	110	43	1	1	54	1.17
3843315--3843370	18	2.9	18	76	10	58	3	14	7	75	1.16
3849941--3849991	25	2.1	23	89	7	75	3	1	7	86	0.77
3850191--3850230	21	2.1	18	86	13	53	50	10	5	35	1.58
3861680--3861772	42	2.2	42	81	9	109	29	25	8	36	1.86
3870566--3870604	10	3.8	10	86	3	51	33	12	12	41	1.82
3875025--3875063	20	2.0	20	84	0	51	5	28	0	66	1.12
3880534--3880571	20	1.9	20	84	10	51	44	5	10	39	1.61
3881605--3881637	16	2.0	17	88	5	50	3	15	9	72	1.21
3883038--3883074	15	2.5	15	83	16	51	16	5	2	75	1.10
3883024--3883074	25	2.1	24	85	3	66	15	5	1	76	1.07
3883043--3883090	19	2.5	20	86	10	73	16	4	2	77	1.03
3883031--3883091	25	2.5	23	72	25	54	16	4	1	77	1.03
3884487--3884717	70	3.3	69	78	10	220	39	12	3	43	1.62
3884546--3884715	69	2.4	65	76	16	162	39	14	3	42	1.62
3886371--3886401	16	1.9	16	93	0	53	48	22	0	29	1.51
3892401--3892457	27	2.2	26	84	9	71	63	1	1	33	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3899121--3899186	20	3.2	19	79	14	69	12	1	39	46	1.50
3899423--3899475	27	2.0	26	88	3	79	13	0	37	49	1.42
3904060--3904101	20	2.1	20	82	8	50	19	19	7	54	1.66
3911098--3911139	19	2.1	20	86	8	59	50	0	16	33	1.46
3913812--3914132	166	1.9	166	88	1	482	32	17	24	25	1.97
3917713--3917755	12	3.5	12	87	3	59	60	9	6	23	1.51
3927279--3927327	23	2.1	23	96	0	89	34	8	32	24	1.85
3933252--3933286	18	2.0	17	94	5	61	37	0	0	62	0.95
3933714--3933747	10	3.4	10	91	0	50	61	0	2	35	1.11
3936457--3936496	2	20.5	2	94	5	73	50	0	0	50	1.00
3938444--3938486	21	2.1	21	86	4	61	37	2	13	46	1.57
3940284--3940312	14	2.1	14	100	0	58	20	6	0	72	1.07
3945613--3945877	124	2.1	124	88	2	386	38	13	11	35	1.81
3945849--3946353	64	8.2	63	67	17	211	35	12	16	35	1.86
3945362--3945922	303	1.8	302	80	5	666	37	13	14	34	1.85
3945352--3946134	429	1.8	428	84	2	1079	37	13	14	34	1.86
3946443--3946511	35	2.0	35	94	0	120	34	13	18	33	1.90
3950402--3952022	237	6.9	237	80	6	1447	40	12	11	35	1.78
3950402--3952022	477	3.4	469	80	6	1336	40	12	11	35	1.78
3969926--3969963	20	1.9	20	89	10	60	26	13	31	28	1.93
3974433--3974474	13	3.3	13	78	18	52	66	2	0	30	1.04
3979788--3979819	16	2.0	16	100	0	64	37	6	18	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3986276--3986343	31	2.2	32	86	5	95	77	2	13	5	1.06
3987349--3987403	28	2.0	28	89	7	85	27	23	27	21	1.99
3990785--3990852	23	2.9	24	82	6	77	61	0	4	33	1.16
3993096--3993155	17	3.6	16	72	14	50	26	20	6	46	1.75
3993532--3993591	17	3.6	16	72	14	50	26	20	6	46	1.75
3993978--3994029	16	3.2	16	75	5	50	28	13	7	50	1.69
3993775--3994592	408	2.0	409	95	1	1462	27	12	11	47	1.76
3995462--3995499	17	2.2	17	100	0	76	36	0	28	34	1.58
3996827--3996941	60	1.9	60	83	3	151	26	17	11	45	1.82
4010030--4010073	21	2.1	22	83	8	56	54	2	11	31	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77