genome.fa.s179.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  77  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15776856--15776940	38	2.3	37	82	8	109	29	22	5	42	1.77
15776801--15776940	37	3.8	38	72	16	105	32	20	7	40	1.80
15781702--15781728	3	9.0	3	100	0	54	33	0	0	66	0.92
15782637--15782684	25	1.9	25	95	0	87	47	16	12	22	1.80
15784939--15785056	60	2.0	60	85	6	159	28	16	17	37	1.92
15791701--15791731	16	1.9	16	100	0	62	19	12	12	54	1.70
15792390--15792456	33	2.0	33	88	0	98	35	11	11	40	1.79
15795283--15795312	2	15.0	2	100	0	60	50	0	0	50	1.00
15801040--15801076	5	7.4	5	93	0	65	0	24	0	75	0.80
15802124--15802177	26	2.1	26	100	0	108	42	18	22	16	1.89
15805458--15805521	30	2.1	30	91	0	101	50	18	10	20	1.77
15808182--15808219	18	2.2	16	90	9	58	0	5	5	89	0.59
15808909--15808937	2	14.5	2	100	0	58	51	0	0	48	1.00
15823814--15824071	48	5.4	47	82	6	243	53	8	13	24	1.67
15823769--15824071	96	3.2	93	77	10	281	52	7	15	24	1.68
15823769--15824071	48	6.3	46	76	11	227	52	7	15	24	1.68
15824050--15824372	36	8.8	38	71	16	141	52	5	12	30	1.62
15824058--15824265	111	1.9	111	84	2	283	55	4	11	28	1.55
15824317--15824391	35	2.1	35	85	9	100	53	1	12	33	1.46
15827782--15827894	40	2.8	40	80	5	113	38	14	7	40	1.73
15829936--15829989	27	2.0	27	96	0	99	35	16	14	33	1.90
15831558--15831617	31	2.0	31	87	12	90	43	0	3	53	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15831657--15831710	25	2.1	25	86	6	72	33	0	0	66	0.92
15831660--15831725	16	4.2	16	75	7	55	37	0	0	62	0.96
15831660--15831730	21	3.2	21	75	14	79	38	0	0	61	0.96
15843680--15843731	21	2.5	21	81	9	63	55	0	0	44	0.99
15843704--15843780	29	2.6	30	76	15	88	57	2	0	40	1.13
15843730--15843887	79	2.0	79	97	0	298	50	3	6	38	1.47
15844870--15844900	16	1.9	16	93	0	53	54	0	3	41	1.16
15845249--15845350	28	3.4	28	70	14	78	37	0	0	61	1.03
15859960--15860001	22	1.9	22	85	0	57	9	42	9	38	1.70
15872429--15872469	20	2.0	20	86	9	57	46	0	0	53	1.00
15872460--15872510	11	4.9	11	77	18	56	29	0	0	70	0.87
15872453--15872535	25	3.4	25	72	12	73	34	0	0	65	0.93
15872459--15872531	16	4.2	18	80	16	75	32	0	0	67	0.91
15872443--15872530	30	2.9	30	80	10	97	35	0	0	64	0.94
15872459--15872509	5	10.0	5	77	12	50	31	0	0	68	0.90
15872469--15872523	5	11.0	5	76	7	58	29	0	0	70	0.87
15872488--15872542	20	2.8	20	88	2	76	30	0	1	67	1.01
15874353--15874381	1	29.0	1	100	0	58	0	0	0	100	0.00
15874431--15874467	17	2.2	17	100	0	74	21	18	10	48	1.78
15877191--15877218	2	14.0	2	100	0	56	50	0	0	50	1.00
15877867--15878012	73	2.0	71	79	16	154	52	2	0	44	1.17
15881507--15881531	8	3.1	8	100	0	50	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15899786--15899852	4	16.8	4	93	0	89	41	25	7	25	1.81
15899786--15899869	12	7.0	12	88	0	96	38	25	11	25	1.90
15899794--15899869	4	19.0	4	94	0	71	36	25	13	25	1.92
15899786--15899868	8	10.4	8	92	0	85	38	25	10	25	1.88
15903338--15903405	23	3.0	23	76	4	66	63	11	4	20	1.45
15903426--15903467	19	2.2	19	86	0	57	54	7	9	28	1.59
15903462--15903509	20	2.4	20	92	0	78	54	6	2	37	1.38
15903733--15903806	20	3.8	20	82	5	71	55	13	6	24	1.62
15903733--15903813	40	2.0	40	83	4	101	56	12	6	24	1.58
15908243--15908288	18	2.6	19	80	16	55	73	6	2	17	1.14
15920767--15920804	18	2.2	16	90	9	58	76	0	10	13	1.02
15927878--15927902	2	12.5	2	100	0	50	52	0	48	0	1.00
15931508--15931548	5	8.6	5	94	2	59	78	0	19	2	0.87
15931590--15931637	2	24.5	2	82	4	62	43	0	0	56	0.99
15935643--15935733	28	3.2	28	93	0	155	24	26	12	37	1.90
15945085--15945123	17	2.3	17	81	0	51	51	10	15	23	1.73
15950362--15950414	26	2.0	26	96	0	97	50	13	7	28	1.68
15950544--15950602	29	2.0	29	96	0	109	38	6	10	44	1.65
15955091--15955128	2	19.0	2	88	0	58	50	0	0	50	1.00
15971785--15971838	4	13.0	4	96	3	90	0	0	24	75	0.80
15972629--15972655	1	27.0	1	100	0	54	100	0	0	0	0.00
15978064--15979179	39	28.2	39	93	5	1763	22	16	22	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15979187--15979276	10	9.0	10	81	8	96	85	4	0	10	0.72
15979187--15979275	29	3.3	27	82	13	96	86	4	0	8	0.69
15979187--15979263	24	3.4	22	84	10	100	88	3	0	7	0.63
15979187--15979275	5	15.5	6	76	20	68	86	4	0	8	0.69
15979187--15979263	1	77.0	1	78	0	73	88	3	0	7	0.63
15979451--15979561	3	35.3	3	71	21	54	30	0	5	63	1.16
15979451--15979560	20	5.4	20	70	22	70	30	0	5	63	1.17
15980109--15980157	20	2.5	20	86	0	71	24	26	24	24	2.00
15980398--15980440	14	3.1	14	86	6	61	6	41	20	30	1.79
15980487--15980532	18	2.6	18	100	0	92	8	0	4	86	0.68
15980556--15980580	13	1.9	13	100	0	50	0	8	0	92	0.40
15980571--15981029	151	2.9	157	89	5	691	29	14	17	38	1.90
15990927--15990965	4	9.0	4	94	5	51	76	23	0	0	0.78
16004057--16004103	24	2.0	24	87	8	69	51	0	0	48	1.00
16004056--16004173	32	3.5	33	74	16	109	48	0	3	48	1.18
16004168--16004223	22	2.4	23	82	8	69	41	1	0	57	1.09
16005520--16005571	22	2.4	22	90	0	86	23	19	19	38	1.93
16007680--16007713	9	3.8	9	100	0	68	17	0	0	82	0.67
16008501--16008529	2	14.5	2	100	0	58	51	0	48	0	1.00
16009228--16009278	11	4.5	11	76	9	57	50	1	0	47	1.12
16024369--16024456	46	1.9	46	92	0	149	37	12	19	30	1.89
16028489--16028558	34	2.1	34	100	0	140	28	22	15	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16032592--16032616	7	3.6	7	100	0	50	72	0	0	28	0.86
16033564--16033610	2	23.5	2	100	0	94	51	0	0	48	1.00
16033785--16033826	2	21.5	2	95	4	77	47	0	0	52	1.00
16038708--16038733	3	8.7	3	100	0	52	65	0	34	0	0.93
16042361--16042840	239	2.0	237	97	0	915	29	19	18	32	1.96
16044781--16044814	16	2.1	17	88	5	52	47	5	38	8	1.59
16057460--16057485	2	13.0	2	100	0	52	50	0	0	50	1.00
16057676--16057705	2	15.0	2	100	0	60	50	0	50	0	1.00
16057867--16057895	12	2.4	12	100	0	58	75	0	0	24	0.80
16073495--16073537	2	21.5	2	100	0	86	51	0	48	0	1.00
16073887--16073920	4	8.5	4	100	0	68	73	0	26	0	0.83
16082751--16082780	2	15.0	2	92	0	51	46	0	3	50	1.18
16084508--16084545	19	2.0	19	89	0	58	57	13	5	23	1.56
16088519--16088549	16	1.9	16	93	0	53	77	3	0	19	0.90
16089249--16089287	18	2.2	17	86	13	53	5	7	5	82	0.96
16089560--16089604	12	3.9	12	82	11	58	4	2	8	84	0.84
16089560--16089601	16	2.4	18	80	7	52	2	2	9	85	0.77
16089599--16089640	15	2.8	16	82	10	52	45	0	0	54	0.99
16089788--16090268	48	9.8	49	82	6	575	34	25	11	28	1.91
16089779--16090277	97	5.1	97	89	3	693	34	24	11	30	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77

The End!