genome.fa.s179.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  70  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14152188--14152225	12	3.2	12	92	7	60	23	57	7	10	1.58
14152420--14152477	22	2.6	22	84	10	82	81	8	8	1	0.96
14153496--14153538	18	2.4	18	84	7	52	62	0	6	30	1.21
14154462--14154528	5	14.0	5	79	6	68	79	16	1	2	0.94
14155614--14155720	29	3.8	28	75	8	90	34	1	4	58	1.29
14155659--14155725	19	3.4	19	75	22	66	37	0	4	58	1.19
14155610--14155725	10	12.2	9	68	12	63	36	1	4	57	1.28
14155691--14155743	19	2.8	19	76	0	52	47	0	1	50	1.12
14156525--14156582	24	2.4	24	91	0	89	55	8	8	27	1.60
14162566--14162605	19	2.0	21	85	9	57	10	10	2	77	1.08
14162641--14162695	26	2.4	21	74	25	65	29	27	0	43	1.55
14162648--14162700	26	2.0	26	100	0	106	33	26	0	39	1.57
14164320--14164369	21	2.4	20	80	6	55	26	10	24	40	1.86
14165304--14165349	19	2.5	19	83	13	60	45	0	2	52	1.13
14165484--14165547	26	2.8	22	80	17	76	45	4	1	48	1.32
14165527--14165573	15	2.8	17	78	15	53	48	2	0	48	1.13
14165675--14165710	16	2.4	15	86	13	56	47	0	5	47	1.25
14166088--14166148	21	2.9	21	78	9	54	32	1	3	62	1.21
14166163--14166211	20	2.5	20	83	6	55	32	0	6	61	1.21
14166613--14166711	37	2.7	37	81	6	103	34	4	3	58	1.32
14166747--14166782	19	1.9	18	88	5	54	63	0	0	36	0.94
14167380--14167431	21	2.5	21	90	6	79	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14167380--14167431	22	2.5	22	93	6	90	50	0	0	50	1.00
14167869--14167932	30	2.1	30	88	5	94	42	0	4	53	1.22
14168613--14169064	183	2.5	183	94	0	796	27	27	22	22	1.99
14170791--14170833	15	2.9	15	100	0	86	37	0	27	34	1.57
14171738--14171791	18	3.0	18	100	0	108	44	16	11	27	1.82
14173856--14173907	12	4.0	12	81	16	59	61	0	0	38	0.96
14173856--14173907	13	3.9	13	76	18	54	61	0	0	38	0.96
14174070--14174108	21	1.9	21	85	15	55	23	0	2	74	0.94
14178828--14178855	3	9.3	3	100	0	56	32	0	35	32	1.58
14180717--14180763	3	15.7	3	100	0	94	34	0	0	65	0.93
14185045--14185574	262	2.0	264	86	5	752	32	21	17	28	1.96
14186759--14186821	26	2.4	26	78	21	62	39	1	0	58	1.07
14186720--14186812	35	2.7	34	75	9	82	38	2	0	59	1.10
14186858--14186903	23	2.0	24	82	4	58	47	8	4	39	1.54
14187050--14187085	19	1.9	18	88	5	54	77	5	5	11	1.10
14188630--14188664	18	2.0	18	94	5	63	51	5	5	37	1.50
14188635--14188695	25	2.4	26	83	8	90	54	8	3	34	1.47
14196554--14196599	3	15.3	3	90	0	74	67	4	0	28	1.10
14198012--14198069	18	3.1	18	78	11	55	31	0	6	62	1.22
14198103--14198176	10	7.5	10	71	8	53	33	1	4	60	1.24
14198103--14198176	18	3.8	20	71	10	62	33	1	4	60	1.24
14198488--14198529	2	21.0	2	100	0	84	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14200306--14200335	1	30.0	1	93	0	51	96	3	0	0	0.21
14201334--14201362	13	2.2	13	100	0	58	79	0	0	20	0.74
14201333--14201374	11	3.7	11	83	3	57	71	0	0	28	0.86
14203511--14203541	7	4.3	7	95	4	53	74	0	0	25	0.82
14203511--14203556	15	3.1	15	84	6	58	78	2	0	19	0.86
14204376--14204409	2	17.0	2	100	0	68	50	0	0	50	1.00
14205545--14205578	17	2.0	17	100	0	68	76	0	0	23	0.79
14205545--14205599	24	2.3	24	93	0	92	72	3	0	23	1.00
14205547--14205605	17	3.5	17	76	17	61	72	3	0	23	0.99
14207547--14207595	20	2.6	18	77	6	53	61	0	6	32	1.21
14221332--14221360	9	3.0	10	90	10	51	79	0	0	20	0.74
14222220--14222249	15	1.9	16	93	6	53	33	0	0	66	0.92
14223062--14223649	265	2.2	267	93	1	1000	34	23	13	28	1.92
14223511--14223694	81	2.3	81	80	1	208	35	24	10	29	1.89
14223628--14223779	43	3.6	41	78	4	106	45	17	5	32	1.70
14223670--14223780	42	2.6	43	82	1	125	48	15	4	31	1.65
14227305--14227372	15	4.7	15	79	15	72	22	0	30	47	1.52
14227316--14227372	14	3.9	14	81	6	69	19	0	31	49	1.49
14227316--14227372	29	1.9	30	92	3	98	19	0	31	49	1.49
14227350--14227430	30	2.7	30	75	16	87	19	3	30	45	1.68
14227444--14227492	14	3.4	14	80	5	62	18	0	32	48	1.48
14227444--14227484	15	2.8	15	85	3	57	14	0	34	51	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14227328--14227503	58	3.0	56	74	11	158	19	1	32	45	1.61
14227545--14227620	15	4.8	16	83	6	84	17	1	30	51	1.53
14227536--14227614	8	10.0	8	73	16	67	20	1	27	50	1.56
14229292--14229330	18	2.2	17	86	13	53	51	2	0	46	1.14
14230359--14230409	12	4.3	12	85	11	70	0	0	13	86	0.58
14230359--14230409	19	2.8	19	88	8	72	0	0	13	86	0.58
14242098--14242126	15	2.0	15	93	6	51	55	13	3	27	1.55
14259849--14259899	18	2.7	18	78	6	57	35	5	0	58	1.22
14261838--14261899	18	3.5	17	80	10	63	20	0	4	74	1.00
14261845--14261900	25	2.3	24	90	3	85	21	0	5	73	1.03
14261839--14261900	9	7.4	8	72	16	54	20	0	4	74	1.00
14261867--14261900	17	2.0	17	94	0	59	20	0	2	76	0.92
14263055--14263082	2	14.0	2	100	0	56	50	0	0	50	1.00
14263777--14263836	29	2.1	28	84	9	77	38	3	0	58	1.15
14263911--14263945	14	2.5	14	85	0	52	20	0	2	77	0.90
14263903--14263948	15	3.1	15	84	6	58	19	0	2	78	0.86
14263918--14263948	7	4.3	7	92	8	53	25	0	0	74	0.82
14264059--14264083	8	3.1	8	100	0	50	76	0	0	24	0.80
14264390--14264479	41	2.2	41	84	3	112	42	3	15	38	1.64
14265430--14265487	25	2.3	25	96	0	107	24	18	17	39	1.92
14267183--14267249	27	2.4	30	80	12	79	58	1	1	38	1.17
14267353--14267394	20	2.1	20	95	0	75	19	11	19	50	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14268724--14268753	2	15.0	2	100	0	60	0	50	0	50	1.00
14269063--14269112	19	2.7	18	87	3	64	58	2	0	40	1.10
14269081--14269179	48	2.1	48	82	3	119	60	4	4	31	1.34
14270161--14270203	21	2.1	21	86	4	61	41	0	6	51	1.29
14270292--14270329	10	3.9	10	82	3	51	52	0	2	44	1.14
14280315--14280363	18	2.7	18	80	3	53	46	2	4	46	1.33
14280480--14280536	26	2.4	24	78	16	64	61	0	1	36	1.07
14286658--14286752	13	7.3	12	69	19	50	73	4	6	15	1.19
14286676--14286752	27	2.8	27	76	9	84	75	5	6	12	1.17
14290685--14290747	31	2.1	30	90	3	99	60	6	3	30	1.37
14290713--14290757	20	2.2	20	84	7	56	62	8	2	26	1.37
14290713--14290757	21	2.2	20	84	4	54	62	8	2	26	1.37
14290691--14290758	31	2.2	31	86	0	91	58	7	2	30	1.40
14291774--14291875	10	10.8	10	74	15	74	32	1	6	58	1.35
14291751--14291860	38	2.9	37	75	14	100	27	3	6	62	1.36
14291801--14291860	27	2.1	28	84	6	77	26	1	6	65	1.27
14291763--14291902	10	14.6	9	69	16	68	30	1	5	62	1.27
14293233--14293378	52	2.8	51	86	5	195	26	26	8	39	1.84
14293413--14293443	11	2.8	11	90	0	53	51	32	0	16	1.44
14293693--14293767	25	3.0	25	74	0	69	22	28	8	41	1.82
14294318--14294474	52	3.0	51	83	3	188	28	21	7	43	1.79
14294499--14294529	11	2.8	11	90	0	53	51	32	0	16	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14295783--14295929	52	2.8	52	85	2	197	27	25	7	40	1.82
14303248--14303299	25	2.1	25	82	7	61	17	7	7	67	1.39
14306119--14306177	29	2.0	29	100	0	118	32	3	16	47	1.64
14310450--14310507	29	2.0	29	100	0	116	24	13	24	37	1.91
14312364--14312417	27	2.0	27	89	7	83	38	1	0	59	1.08
14314308--14314344	3	12.3	3	100	0	74	64	0	0	35	0.94
14314343--14314382	3	13.3	3	100	0	80	35	0	0	65	0.93
14315464--14315506	21	2.0	21	86	0	59	30	9	16	44	1.79
14315632--14315658	2	13.5	2	100	0	54	51	0	0	48	1.00
14322921--14322947	2	13.5	2	100	0	54	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77