genome.fa.s179.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  52  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10251435--10251514	15	5.1	16	68	15	51	22	3	31	42	1.71
10251742--10251786	3	14.0	3	82	13	54	31	2	0	66	1.04
10251743--10251783	20	2.0	20	90	0	64	29	2	0	68	1.03
10252930--10252963	3	11.7	3	87	6	52	35	0	0	64	0.94
10254031--10254076	15	3.0	15	82	17	51	10	4	6	78	1.08
10255316--10255359	23	1.9	23	86	9	63	43	0	4	52	1.22
10255348--10255995	215	3.0	215	99	0	1266	40	6	12	39	1.70
10258361--10258388	2	14.0	2	100	0	56	50	0	0	50	1.00
10258983--10259068	44	1.9	46	90	4	140	50	16	16	17	1.79
10266643--10266681	8	4.6	8	84	12	51	82	0	15	2	0.79
10266644--10266681	17	2.3	16	90	4	58	81	0	15	2	0.80
10267409--10268185	49	16.0	49	82	4	876	27	13	22	37	1.91
10267409--10268185	292	2.7	290	84	5	987	27	13	22	37	1.91
10269318--10269691	193	1.9	192	94	1	660	36	15	12	35	1.85
10270005--10270068	23	2.8	23	97	0	119	50	0	10	39	1.38
10269794--10270260	252	1.9	250	82	7	588	36	11	8	43	1.71
10271336--10271397	18	3.3	18	70	24	56	9	9	51	29	1.66
10271334--10271405	21	3.6	21	83	14	107	9	9	52	27	1.65
10271458--10271514	18	3.2	17	85	7	78	17	5	8	68	1.35
10271451--10271549	43	2.3	43	79	6	101	19	4	7	69	1.28
10272106--10272150	21	2.1	21	83	0	54	28	2	2	66	1.15
10274098--10274555	40	11.1	40	75	9	321	46	17	13	22	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10274023--10274473	43	10.6	43	74	10	320	46	17	12	22	1.82
10274100--10274553	84	5.5	83	81	4	416	46	17	13	23	1.83
10274188--10274554	124	2.9	119	78	9	322	47	16	13	22	1.82
10274788--10274867	20	3.8	21	71	11	56	35	13	10	41	1.78
10275026--10275086	31	2.0	31	83	6	79	39	13	8	39	1.74
10275062--10275271	46	4.6	46	87	3	280	36	13	11	38	1.81
10275091--10275252	25	7.0	25	67	18	98	36	14	9	39	1.79
10275581--10275875	63	4.7	63	82	2	204	30	24	9	36	1.86
10275665--10275876	63	3.4	64	84	2	277	32	25	8	34	1.85
10276581--10276626	8	5.8	8	80	15	51	8	13	0	78	0.97
10276584--10276652	22	2.9	24	80	12	79	5	17	0	76	0.97
10280861--10280885	13	1.9	13	100	0	50	16	0	0	84	0.63
10282692--10282725	17	2.1	17	88	5	52	82	2	0	14	0.79
10282993--10283026	14	2.4	15	85	14	54	64	0	0	35	0.94
10282970--10283021	29	2.0	27	82	17	65	59	0	0	40	0.97
10283002--10283036	14	2.5	14	90	0	52	65	5	0	28	1.15
10284871--10284915	17	2.8	16	86	6	56	82	0	4	13	0.82
10288673--10289248	196	2.9	196	85	3	764	35	19	13	31	1.91
10290428--10290463	15	2.4	15	90	9	56	69	0	22	8	1.15
10290459--10290499	11	3.6	11	87	6	64	80	0	9	9	0.91
10290468--10290565	28	3.5	27	75	15	85	75	2	14	8	1.12
10290428--10290535	7	15.6	7	70	25	70	73	0	16	9	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10291155--10291304	79	1.9	79	86	2	212	38	9	20	32	1.85
10291155--10291338	79	2.3	79	79	5	194	36	9	21	32	1.85
10293015--10293040	12	2.2	12	100	0	52	69	15	0	15	1.20
10293869--10294106	49	4.8	50	75	7	189	39	18	12	29	1.87
10294241--10294335	48	2.0	49	83	6	122	41	21	12	25	1.88
10294162--10294533	147	2.5	147	83	4	516	42	20	13	23	1.88
10294162--10294581	147	2.9	147	81	5	506	42	19	13	25	1.87
10294452--10294670	99	2.2	99	85	3	305	40	19	14	26	1.89
10294667--10294802	42	3.3	42	85	2	175	42	22	11	22	1.86
10294873--10295026	42	3.7	42	82	3	193	41	25	12	20	1.87
10294588--10295027	223	2.0	225	84	1	589	42	21	12	23	1.87
10294849--10295052	84	2.4	83	71	8	196	41	21	11	25	1.86
10295389--10295519	35	3.7	35	83	5	165	37	10	14	37	1.81
10301507--10301571	22	3.0	21	78	10	69	36	3	0	60	1.13
10303112--10303168	16	3.7	15	75	13	53	1	8	10	78	1.02
10303112--10303170	30	2.0	30	86	6	84	1	8	10	79	1.00
10303276--10303313	20	2.0	20	89	5	60	31	13	10	44	1.77
10303569--10303699	21	6.1	21	85	1	163	31	5	19	43	1.74
10303765--10303845	41	1.9	42	85	7	110	34	9	18	37	1.84
10304145--10304196	16	3.3	16	76	15	63	36	9	17	36	1.82
10304139--10304197	31	1.9	31	89	0	91	33	11	16	37	1.86
10304479--10304514	13	2.8	13	91	0	63	30	52	0	16	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10306044--10306236	16	12.1	16	73	12	112	46	32	1	20	1.60
10306046--10306235	33	6.0	32	72	18	103	46	31	1	20	1.60
10306151--10306217	17	4.1	16	87	9	91	49	29	1	19	1.57
10305991--10306239	111	2.2	113	84	7	339	46	31	2	19	1.61
10306193--10306236	15	2.9	15	86	3	52	45	38	0	15	1.47
10306224--10306298	30	2.6	28	85	4	96	49	29	1	20	1.57
10308004--10308371	201	1.8	203	80	5	442	35	10	9	44	1.72
10308579--10308637	24	2.4	24	85	5	73	71	0	1	27	0.96
10309835--10310036	45	4.6	45	77	6	180	26	13	12	46	1.80
10309835--10310071	44	5.4	44	77	5	192	27	13	13	46	1.79
10309880--10310119	131	1.8	132	82	8	310	26	13	15	45	1.83
10310276--10310309	17	2.0	17	94	0	59	73	0	0	26	0.83
10314171--10314222	2	25.5	2	88	3	77	44	0	5	50	1.26
10315650--10315706	15	3.6	16	75	15	64	54	0	0	45	0.99
10317109--10317155	22	2.1	23	84	4	60	44	6	0	48	1.28
10319992--10320036	24	1.9	24	86	4	65	8	11	6	73	1.25
10320985--10321025	21	1.9	21	90	5	64	75	2	2	19	1.03
10322860--10322918	29	2.0	30	83	3	75	52	0	1	45	1.10
10326576--10326635	24	2.8	20	77	22	68	45	6	11	36	1.67
10326583--10326641	24	2.5	24	94	0	100	45	8	15	30	1.75
10328458--10328501	20	2.2	20	100	0	88	47	0	9	43	1.35
10332949--10332993	17	2.7	15	83	12	54	82	4	2	11	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10333289--10333339	26	2.0	25	88	3	75	64	5	5	23	1.38
10334178--10334212	10	3.4	10	92	4	52	80	5	5	8	1.03
10349270--10349325	22	2.6	23	80	11	64	51	1	0	46	1.11
10349631--10349665	17	1.9	19	88	11	56	48	5	5	40	1.51
10353218--10353246	2	14.5	2	100	0	58	51	0	0	48	1.00
10355949--10356215	42	6.3	43	82	4	278	25	11	19	43	1.85
10355949--10356249	126	2.4	126	86	2	390	25	11	19	42	1.85
10356466--10356527	3	20.7	3	100	0	124	32	0	0	67	0.91
10356888--10356912	11	2.3	11	100	0	50	28	0	16	56	1.41
10358022--10358064	7	5.9	7	81	8	50	25	0	20	53	1.46
10358022--10358142	14	8.5	15	66	16	69	21	0	26	51	1.54
10358022--10358259	28	8.2	28	74	10	106	20	0	28	50	1.54
10358080--10358259	30	6.2	30	76	11	153	19	0	28	51	1.51
10358103--10358235	14	9.3	13	68	19	61	20	0	28	50	1.53
10358181--10358263	14	5.6	14	73	16	69	19	0	27	53	1.46
10358103--10358294	60	3.3	58	80	6	183	20	1	28	49	1.56
10358223--10358555	146	2.3	146	88	3	474	20	2	30	45	1.64
10358385--10358447	30	2.2	29	85	5	83	17	3	33	46	1.64
10358102--10358488	29	13.3	29	68	11	141	20	2	29	47	1.62
10358412--10358571	29	5.5	29	73	13	98	18	1	34	45	1.58
10358533--10358619	45	1.9	44	86	9	122	19	3	29	47	1.66
10358948--10359030	3	28.3	3	73	20	61	27	2	1	68	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10358940--10359029	17	5.4	17	75	12	71	27	2	1	68	1.08
10360068--10360112	18	2.6	17	89	6	72	37	0	2	60	1.09
10360118--10360157	21	1.9	21	94	0	71	42	0	0	57	0.98
10360297--10360335	21	1.9	20	84	5	51	0	7	7	84	0.77
10360386--10360472	37	2.4	36	88	3	129	52	14	14	17	1.74
10360508--10360786	132	2.1	132	82	4	330	41	15	17	25	1.89
10360431--10360890	242	1.9	241	79	4	516	41	15	18	24	1.89
10360650--10360975	110	3.0	110	79	2	323	42	17	17	23	1.89
10362036--10362075	20	2.0	21	85	5	55	67	5	2	25	1.23
10362257--10362302	18	2.6	18	86	6	67	67	2	4	26	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77