genome.fa.s179.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  6  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
799100--799131	4	8.0	4	100	0	64	75	0	0	25	0.81
812178--812229	3	17.3	3	100	0	104	34	0	0	65	0.93
814982--815044	17	3.6	17	77	14	67	50	3	1	44	1.27
815371--815430	10	6.0	10	76	7	59	61	0	38	0	0.96
822426--822469	22	2.0	22	95	0	79	43	13	11	31	1.80
826352--826395	22	2.0	22	90	0	70	43	11	11	34	1.77
826817--826852	2	18.0	2	94	0	63	2	0	47	50	1.15
832073--832128	29	1.9	29	92	0	94	46	8	16	28	1.77
833994--834031	15	2.5	15	91	0	67	55	10	0	34	1.34
834341--834384	20	2.2	20	88	8	63	50	0	0	50	1.00
840806--840845	19	2.1	19	86	9	55	42	2	15	40	1.60
842737--842777	21	2.0	21	85	9	57	53	0	2	43	1.13
842741--842785	21	2.1	22	83	4	56	57	0	2	40	1.11
851775--851856	23	3.4	23	77	9	92	52	3	2	41	1.32
858738--858762	6	4.2	6	100	0	50	0	32	0	68	0.90
859076--859102	3	9.0	3	100	0	54	66	0	0	33	0.92
859771--859809	21	1.9	20	89	5	60	58	0	7	33	1.26
873371--873412	21	2.0	21	95	0	75	42	2	0	54	1.13
874094--874118	10	2.5	10	100	0	50	64	0	0	36	0.94
874808--874863	28	2.0	28	100	0	112	28	32	7	32	1.84
879317--879359	20	2.1	21	83	12	54	32	0	0	67	0.91
879413--879458	19	2.4	19	82	7	58	60	6	0	32	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
882958--882982	13	1.9	13	100	0	50	20	0	0	80	0.72
883302--883347	24	1.9	24	82	8	58	58	4	0	36	1.18
885221--885267	20	2.2	22	88	7	71	29	0	2	68	1.02
886030--886095	31	2.2	31	81	13	84	66	3	1	28	1.15
886032--886107	29	2.7	28	81	15	86	67	2	1	28	1.12
886439--886500	13	5.1	12	77	11	63	62	0	0	37	0.95
886447--886507	24	2.6	24	81	2	79	63	0	0	36	0.94
886459--886513	28	1.9	29	88	3	85	65	0	0	34	0.93
886566--886616	28	1.9	25	88	11	75	49	1	0	49	1.12
890309--890338	13	2.2	14	94	5	53	30	0	3	66	1.07
893475--893530	21	2.6	22	77	5	62	57	0	8	33	1.30
895707--895766	9	6.7	9	80	14	52	78	5	0	16	0.92
899489--899532	22	2.0	22	90	0	70	34	9	13	43	1.76
903531--903574	22	2.0	22	86	0	61	38	11	9	40	1.73
904205--904374	67	2.5	67	84	3	216	45	15	5	32	1.70
904311--904393	23	3.7	23	73	9	73	48	14	4	32	1.65
904220--904432	113	1.9	112	85	5	295	46	14	5	34	1.66
904287--904380	44	2.1	47	84	6	122	47	15	7	28	1.73
904277--904382	44	2.3	46	78	9	119	45	16	6	32	1.73
904513--904544	17	1.9	17	93	6	57	34	18	0	46	1.49
905622--905737	8	13.6	9	71	19	63	12	16	0	70	1.16
905667--905732	18	3.7	18	77	18	75	12	18	0	69	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
918263--918332	23	2.8	25	82	10	90	80	0	12	7	0.91
918264--918346	15	6.5	13	74	20	68	78	0	14	7	0.95
918265--918345	29	2.9	28	81	7	92	79	0	13	7	0.94
918263--918346	24	3.3	24	76	20	82	77	0	14	8	0.99
919360--919537	42	4.2	42	74	3	151	26	13	17	41	1.87
919360--919537	85	2.1	85	92	3	297	26	13	17	41	1.87
919790--919856	7	9.0	7	76	16	55	19	2	1	76	1.00
919787--919830	19	2.3	19	88	0	61	15	2	2	79	0.93
919825--919995	7	23.7	7	68	20	79	32	4	1	61	1.25
919825--919995	15	11.9	14	68	19	79	32	4	1	61	1.25
919786--919899	4	28.5	4	71	20	71	25	3	0	70	1.09
919792--919995	23	8.9	22	70	19	84	29	3	1	64	1.23
919830--919995	48	3.5	47	80	11	151	33	4	1	60	1.26
920704--920733	9	3.3	9	90	0	51	23	0	0	76	0.78
920805--921044	63	3.8	63	84	7	294	51	2	8	37	1.45
920979--921021	17	2.4	18	84	11	61	53	0	0	46	1.00
921105--921223	54	2.2	55	80	11	138	45	10	9	34	1.71
923389--923426	20	1.9	20	94	0	67	26	0	2	71	1.00
923389--923423	7	5.1	7	86	6	54	28	0	2	68	1.04
923389--923423	13	2.6	14	86	9	54	28	0	2	68	1.04
925460--925506	24	2.0	23	88	12	69	53	6	10	29	1.60
927487--927553	30	2.3	30	84	7	84	29	0	8	61	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
927865--927936	30	2.3	32	90	7	121	52	5	4	37	1.44
928411--928458	13	3.8	13	78	10	55	68	2	0	29	1.01
930276--930316	7	5.9	7	97	0	73	46	0	9	43	1.36
930267--930316	21	2.4	21	86	0	73	50	0	10	40	1.36
933664--933707	17	2.6	16	85	10	52	38	0	6	54	1.27
937954--937998	3	15.0	3	90	0	72	64	2	2	31	1.18
938429--938516	28	3.0	29	77	8	81	40	5	3	50	1.43
938888--938918	3	10.3	3	92	0	53	61	0	3	35	1.12
939176--939247	23	3.0	23	78	13	58	48	1	1	48	1.18
939411--939449	19	2.1	19	85	9	53	46	15	5	33	1.68
940401--940512	56	2.0	56	87	5	165	18	7	16	57	1.62
941856--941892	18	2.1	17	90	5	56	24	2	0	72	0.97
943222--943247	2	13.0	2	100	0	52	50	0	0	50	1.00
945182--945206	3	8.3	3	100	0	50	32	0	0	68	0.90
946196--946260	3	22.3	3	75	6	62	29	3	4	63	1.30
946334--946377	19	2.4	19	80	3	54	52	4	11	31	1.57
947066--947099	17	2.1	16	88	5	50	44	8	2	44	1.50
947678--947728	23	2.2	23	80	16	61	21	3	11	62	1.45
952487--952616	69	1.9	69	80	3	154	33	12	16	37	1.86
956484--956535	20	2.6	21	84	9	72	23	21	9	46	1.80
956538--956576	19	2.0	20	90	5	62	38	15	12	33	1.85
958319--958349	11	2.8	11	95	0	53	29	35	9	25	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
963665--963742	26	2.9	26	81	7	77	74	0	15	10	1.07
963671--963722	12	4.3	11	77	15	50	78	0	11	9	0.95
963695--963758	18	3.7	17	70	17	51	73	0	17	9	1.08
964453--964840	39	10.1	38	81	8	243	45	19	11	23	1.82
964453--964840	78	5.1	77	79	8	276	45	19	11	23	1.82
964492--964840	39	9.1	39	82	8	279	46	19	11	22	1.81
964779--964840	22	3.0	22	60	22	53	46	17	12	22	1.82
968303--968328	12	2.2	12	100	0	52	65	0	7	26	1.20
976670--976947	120	2.3	124	80	11	292	34	9	11	45	1.72
977104--977153	4	11.8	4	79	12	55	70	4	4	22	1.21
979978--980016	19	2.0	20	90	5	62	28	12	15	43	1.83
980153--980204	19	2.8	18	77	8	59	32	0	5	61	1.20
981136--981182	19	2.5	18	78	18	51	53	4	0	42	1.20
981266--981340	29	2.7	29	83	8	93	48	0	0	52	1.00
981366--981399	16	2.1	17	88	5	52	23	0	0	76	0.79
982136--982185	18	2.7	18	79	11	57	54	4	2	40	1.31
982355--982421	27	2.4	28	76	14	68	52	4	1	41	1.31
982522--982582	19	3.2	19	78	17	63	47	3	0	49	1.18
983764--983795	11	2.9	11	95	0	55	56	0	0	43	0.99
984137--984195	24	2.5	24	80	5	57	45	1	5	47	1.34
1002152--1002192	2	20.5	2	100	0	82	0	48	0	51	1.00
1003174--1003221	22	2.3	22	80	19	59	58	2	0	39	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1004124--1004165	21	2.0	21	81	9	50	57	0	0	42	0.99
1006086--1006115	12	2.5	12	88	0	51	40	10	50	0	1.36
1012029--1012054	13	2.0	13	100	0	52	53	23	0	23	1.46
1012124--1012157	16	2.1	16	88	0	50	52	0	0	47	1.00
1013221--1013255	18	2.0	17	88	5	52	22	0	0	77	0.78
1013315--1013368	24	2.3	23	84	9	65	48	3	0	48	1.19
1013607--1013634	14	2.0	14	100	0	56	57	0	0	42	0.99
1013818--1013857	21	1.9	21	100	0	80	57	0	0	42	0.98
1013818--1014069	15	15.6	17	64	23	84	54	2	0	42	1.16
1013827--1014091	23	11.8	22	72	17	140	54	2	0	43	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77