genome.fa.s179.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  54  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10654379--10654499	28	4.5	26	79	16	133	17	3	0	79	0.87
10656819--10656918	51	2.0	51	85	0	137	27	19	7	47	1.75
10666291--10666326	8	4.4	8	93	6	63	66	0	0	33	0.92
10666299--10666335	17	2.2	17	90	0	56	70	0	2	27	1.01
10666289--10666343	25	2.2	25	80	6	67	70	0	3	25	1.03
10667349--10667434	40	2.2	39	89	6	131	24	16	13	45	1.84
10667672--10667706	7	5.1	7	93	6	63	28	0	0	71	0.86
10667672--10667706	13	2.6	13	95	4	61	28	0	0	71	0.86
10667666--10667706	20	2.0	20	95	0	73	26	0	2	70	0.99
10667704--10667747	3	15.0	3	95	4	81	31	0	0	68	0.90
10667666--10667798	6	21.7	6	79	14	78	23	0	2	73	0.99
10667705--10667794	38	2.4	36	77	20	87	22	1	2	74	0.99
10667738--10667798	11	5.2	11	71	13	50	14	1	3	80	0.92
10668036--10668060	11	2.3	11	100	0	50	32	0	16	52	1.44
10669392--10669461	33	2.1	33	86	0	95	30	15	22	31	1.95
10674053--10674081	14	2.1	14	100	0	58	44	0	0	55	0.99
10678295--10678360	31	2.1	31	91	0	105	46	12	18	22	1.81
10682830--10682858	3	9.7	3	100	0	58	31	0	0	68	0.89
10688612--10688639	14	2.0	14	100	0	56	50	0	0	50	1.00
10688762--10688794	17	2.0	17	88	5	50	57	3	3	36	1.29
10719115--10719654	285	1.9	285	92	0	902	21	24	12	41	1.87
10720312--10720360	21	2.3	22	75	10	57	30	36	2	30	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10720086--10720567	231	2.1	231	90	2	754	24	32	5	37	1.79
10723694--10724109	207	2.0	207	98	0	796	38	17	13	29	1.89
10726191--10726233	18	2.4	19	80	11	54	65	0	2	32	1.06
10726255--10726283	13	2.1	14	93	6	51	41	0	0	58	0.98
10727267--10727295	3	9.7	3	100	0	58	31	0	0	68	0.89
10727420--10727481	21	3.0	20	85	4	70	64	0	3	32	1.09
10727651--10727717	24	2.8	24	86	0	89	43	4	0	52	1.21
10728264--10728330	15	4.3	15	75	9	55	32	1	2	62	1.19
10730834--10730864	7	4.6	7	96	4	55	32	29	16	22	1.95
10730834--10730868	14	2.7	13	87	12	54	34	25	17	22	1.96
10755559--10755597	15	2.5	16	87	4	53	41	0	0	58	0.98
10756297--10756373	35	2.2	35	83	0	100	35	6	1	57	1.33
10760559--10760588	10	3.1	10	95	4	53	36	0	0	63	0.95
10761215--10761268	28	1.9	28	96	0	99	11	35	11	42	1.76
10761480--10761518	21	1.9	20	94	5	69	38	20	0	41	1.53
10761480--10761524	21	2.4	18	82	17	56	40	17	0	42	1.50
10761484--10761533	21	2.4	20	80	9	55	38	22	0	40	1.54
10781120--10781158	15	2.5	16	87	4	53	41	0	0	58	0.98
10781874--10781941	35	1.9	35	87	0	100	35	7	1	55	1.37
10786118--10786166	19	2.5	21	78	18	61	34	0	4	61	1.15
10786132--10786161	10	3.1	10	95	4	53	36	0	0	63	0.95
10786782--10786835	28	1.9	28	96	0	99	11	35	11	42	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10793043--10793096	24	2.2	23	81	18	65	25	5	3	64	1.32
10793147--10793172	3	8.7	3	100	0	52	30	0	0	69	0.89
10793590--10793643	26	2.2	25	86	6	74	40	7	18	33	1.78
10793755--10793794	11	3.7	11	83	6	55	17	35	27	20	1.95
10793785--10793836	20	2.6	20	85	11	79	26	25	23	25	2.00
10794061--10794103	5	8.6	5	85	10	61	20	44	34	0	1.52
10794061--10794115	15	3.5	15	85	9	67	20	43	34	1	1.62
10794138--10794164	10	2.7	10	100	0	54	14	0	7	77	0.97
10794187--10794645	156	2.9	161	94	2	768	28	14	17	39	1.89
10797905--10797943	1	39.0	1	89	0	60	94	0	5	0	0.29
10797908--10797953	21	2.2	21	84	0	56	86	8	4	0	0.68
10798311--10798401	11	8.0	11	77	12	78	81	0	14	4	0.84
10798330--10798387	18	3.4	17	77	15	66	84	0	13	1	0.70
10798349--10798407	16	3.8	16	75	11	59	81	0	15	3	0.82
10799597--10800242	42	15.5	41	88	6	933	22	17	25	35	1.95
10799597--10800242	83	7.7	82	91	5	924	22	17	25	35	1.95
10799597--10800242	125	5.2	124	89	4	942	22	17	25	35	1.95
10800249--10800378	41	3.1	42	83	8	160	86	7	0	5	0.75
10800248--10800373	9	13.7	9	80	13	116	85	8	0	4	0.76
10800249--10800366	1	118.0	1	76	0	101	87	7	0	4	0.71
10810248--10810289	4	10.5	4	89	0	66	30	0	19	50	1.48
10810248--10810289	12	3.5	12	96	0	75	30	0	19	50	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10810311--10810360	25	2.0	25	96	0	91	42	14	20	24	1.88
10816807--10816838	16	2.0	16	93	0	55	34	0	0	65	0.93
10816815--10816839	11	2.3	11	100	0	50	32	0	0	68	0.90
10817749--10817800	18	2.8	18	72	16	52	40	1	0	57	1.10
10817794--10817823	14	2.2	14	94	5	53	43	3	6	46	1.46
10817807--10817847	19	2.1	20	86	4	57	43	0	2	53	1.13
10817804--10817850	20	2.3	21	82	10	62	44	0	2	53	1.12
10817818--10817892	33	2.2	33	79	6	80	40	0	0	60	0.97
10817831--10817891	16	3.7	16	74	12	61	37	0	0	62	0.96
10820451--10820501	24	2.2	23	86	10	68	41	9	19	29	1.84
10820469--10820536	35	1.9	35	84	0	91	44	7	14	33	1.73
10836032--10836111	32	2.5	33	82	11	96	21	0	36	42	1.53
10836046--10836103	16	3.7	16	90	2	91	24	0	32	43	1.55
10836041--10836110	15	4.5	14	80	19	77	22	0	35	41	1.54
10836226--10836266	21	2.0	21	85	9	57	43	2	0	53	1.13
10836514--10836555	17	2.5	17	76	7	50	76	0	2	21	0.90
10837539--10837571	11	3.1	11	82	8	50	9	6	54	30	1.56
10837538--10837572	10	3.4	10	84	7	52	11	5	51	31	1.61
10837675--10837714	18	2.2	19	95	4	73	7	0	5	87	0.66
10839551--10839594	19	2.4	19	85	11	56	36	2	0	61	1.09
10839565--10839594	10	3.1	10	95	4	53	36	0	0	63	0.95
10839567--10839596	9	3.2	9	95	4	51	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10839760--10839808	25	2.0	25	84	8	64	55	12	0	32	1.37
10841708--10841737	6	5.0	6	91	0	51	30	33	20	16	1.94
10841995--10842030	19	1.9	19	94	5	65	5	11	0	83	0.80
10842965--10843006	15	2.7	15	88	7	57	52	4	4	38	1.44
10848523--10848562	18	2.2	18	91	8	64	12	12	0	75	1.06
10860317--10860354	12	3.2	12	88	0	58	34	0	15	50	1.45
10864693--10864719	13	2.1	13	100	0	54	22	40	7	29	1.81
10867459--10867521	18	3.6	17	79	12	56	38	1	1	58	1.17
10867515--10867544	14	2.2	14	94	5	53	43	3	6	46	1.46
10867528--10867610	17	4.6	19	73	11	59	43	0	1	55	1.07
10867538--10867589	8	6.0	9	82	8	56	44	0	0	55	0.99
10867584--10867617	17	2.0	17	88	0	50	41	0	0	58	0.98
10888532--10888588	17	3.4	17	76	11	55	15	7	0	77	0.98
10890295--10890351	10	5.9	9	76	19	53	22	0	3	73	0.98
10890304--10890363	32	2.0	32	83	9	81	25	0	5	70	1.08
10890530--10890554	13	1.9	13	100	0	50	12	0	8	80	0.92
10891353--10891385	17	1.9	17	100	0	66	18	0	3	78	0.87
10891354--10891469	25	4.6	25	71	19	89	19	3	3	73	1.13
10891354--10891392	4	9.5	4	88	5	60	20	0	2	76	0.90
10891412--10891497	33	2.6	33	81	7	95	13	9	1	75	1.10
10891410--10891470	17	3.4	17	80	13	52	14	6	0	78	0.94
10891452--10891493	22	1.9	22	85	9	59	14	11	2	71	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10891500--10891912	58	7.0	58	84	7	537	43	7	13	35	1.72
10894156--10894574	41	10.1	40	90	4	590	22	17	23	36	1.94
10894583--10894631	17	2.9	15	80	19	53	85	10	2	2	0.76
10894600--10894631	9	3.4	9	91	8	55	87	12	0	0	0.54
10894822--10894956	3	43.3	3	71	22	61	29	0	5	65	1.14
10894822--10894966	28	5.7	28	67	25	90	28	0	5	66	1.14
10894822--10895023	15	13.2	15	65	21	64	25	0	6	67	1.18
10895920--10895979	18	3.3	18	80	15	79	15	8	0	76	1.00
10895920--10895979	17	3.4	17	81	11	59	15	8	0	76	1.00
10895961--10896002	22	1.9	22	85	9	59	14	11	2	71	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77