genome.fa.s179.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  24  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4666162--4666208	12	3.8	12	83	5	58	80	4	0	14	0.85
4667057--4667102	20	2.3	19	85	10	65	67	8	13	10	1.42
4667046--4667126	26	3.2	26	71	11	71	74	6	9	9	1.23
4667114--4667174	21	2.9	21	73	9	61	70	3	4	21	1.21
4667158--4667307	4	36.2	4	67	16	56	64	4	3	28	1.30
4667305--4667364	12	4.9	12	82	10	59	81	5	0	13	0.84
4667290--4667363	17	4.2	17	81	10	78	78	5	0	16	0.93
4667286--4667363	30	2.5	29	85	10	93	78	5	0	16	0.93
4667280--4667349	11	6.2	11	80	9	63	78	2	0	18	0.87
4670754--4670789	2	18.0	2	94	0	63	47	0	0	52	1.00
4671692--4671752	21	2.9	20	85	9	77	68	0	0	31	0.89
4671687--4671757	28	2.6	27	82	8	74	71	0	0	28	0.86
4672335--4672627	152	1.9	155	92	2	493	40	10	8	40	1.70
4676597--4676631	17	2.0	18	94	5	63	11	0	25	62	1.28
4676846--4676921	7	11.6	7	75	10	54	44	32	1	21	1.60
4676846--4676921	39	1.9	39	82	10	93	44	32	1	21	1.60
4676846--4676922	26	2.9	26	74	11	77	44	32	1	22	1.61
4676846--4676922	13	5.9	13	71	15	61	44	32	1	22	1.61
4677049--4677095	17	2.7	17	81	18	53	27	19	6	46	1.74
4678323--4678460	64	2.1	65	82	6	165	47	7	5	39	1.55
4685183--4685217	13	2.6	14	90	4	54	25	2	0	71	1.00
4687514--4687558	8	5.6	8	89	7	56	84	4	0	11	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4687514--4687560	16	2.9	17	87	6	62	82	6	0	10	0.82
4698125--4698175	21	2.4	22	77	12	61	68	7	5	17	1.34
4704041--4704086	15	3.1	15	73	14	51	36	0	6	56	1.25
4705182--4705222	17	2.5	17	85	14	59	58	0	2	39	1.11
4706680--4706734	28	2.0	28	82	10	69	52	1	9	36	1.44
4706911--4706950	19	2.2	19	86	4	55	37	2	0	60	1.11
4708207--4708249	22	2.0	22	90	0	68	34	6	16	41	1.75
4709488--4709531	19	2.3	18	85	11	61	63	4	6	25	1.38
4709526--4709559	17	2.0	17	94	0	59	61	8	0	29	1.26
4709534--4709582	17	3.0	17	82	11	50	61	8	0	30	1.25
4709536--4709590	24	2.2	25	81	15	62	61	7	0	30	1.23
4709558--4709589	15	2.1	15	100	0	64	59	6	0	34	1.23
4709678--4709725	25	2.0	25	88	12	73	56	14	6	22	1.61
4709749--4709806	20	2.7	21	78	7	64	79	1	3	15	0.95
4709743--4709804	31	2.0	30	87	9	90	77	1	4	16	1.02
4710018--4710111	49	1.9	49	86	4	136	29	22	8	39	1.84
4713531--4713581	25	2.0	25	84	0	66	35	13	3	47	1.62
4714020--4714049	13	2.3	13	94	0	51	86	3	0	10	0.67
4714497--4714694	99	2.0	99	82	3	238	47	17	14	20	1.82
4714854--4714882	13	2.2	13	100	0	58	51	6	27	13	1.66
4715854--4715983	61	2.1	62	94	1	226	36	11	12	40	1.79
4724182--4724441	133	1.9	134	85	3	355	39	18	13	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4726611--4726636	10	2.6	10	100	0	52	84	0	0	15	0.62
4726732--4726788	22	2.7	21	79	17	64	56	0	0	43	0.99
4727536--4727565	14	2.1	14	93	0	51	43	0	13	43	1.43
4727747--4727986	18	13.8	18	64	25	99	55	1	2	40	1.21
4727747--4728007	22	11.3	22	71	16	122	55	1	1	40	1.22
4727770--4727923	84	1.9	85	82	10	203	56	2	1	38	1.24
4727927--4728006	41	2.0	41	90	5	126	55	1	2	41	1.21
4728042--4728077	18	1.9	19	88	5	56	44	2	5	47	1.41
4728100--4728166	26	2.6	25	76	6	80	43	2	2	50	1.32
4729886--4729959	25	2.9	25	91	2	112	41	12	10	35	1.77
4730997--4731076	40	2.0	40	87	4	117	41	28	7	22	1.81
4735786--4735818	17	2.0	17	94	5	59	42	0	3	54	1.15
4737876--4737921	16	2.9	16	100	0	92	32	10	13	43	1.78
4738556--4738608	17	3.1	17	76	15	56	73	1	9	15	1.17
4739307--4739367	31	1.9	32	86	3	88	21	8	11	59	1.58
4744168--4744210	15	2.9	15	80	13	52	44	4	6	44	1.52
4744817--4744900	29	2.9	29	83	0	123	27	7	9	55	1.58
4744819--4744892	10	7.6	10	69	22	50	27	8	8	56	1.56
4746509--4746565	28	2.0	28	100	0	114	29	7	7	56	1.53
4746517--4746578	28	2.2	28	88	0	88	33	6	8	51	1.57
4746866--4746915	18	2.8	18	75	0	55	40	0	2	58	1.10
4747219--4747269	18	2.9	18	80	5	52	35	0	1	62	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4747258--4747316	20	2.9	19	82	17	66	44	0	0	55	0.99
4747260--4747307	18	2.6	19	83	12	64	43	0	0	56	0.99
4751349--4751401	26	2.1	26	82	10	65	71	3	0	24	1.02
4752137--4752191	22	2.5	22	78	0	65	38	9	14	38	1.78
4752317--4752398	41	2.1	38	90	6	128	30	7	17	45	1.75
4771224--4771277	27	2.0	27	96	0	99	20	7	16	55	1.65
4777439--4777483	21	2.2	21	84	4	56	60	2	0	37	1.09
4778832--4778866	13	2.7	13	90	0	61	60	8	5	25	1.49
4795283--4795339	20	2.8	21	76	15	57	14	0	14	71	1.14
4795925--4796043	56	2.1	55	89	7	186	61	5	10	23	1.47
4800020--4800055	17	2.2	16	90	5	54	83	2	8	5	0.89
4801370--4801423	21	2.6	21	90	0	81	42	7	11	38	1.68
4801315--4801506	87	2.2	88	80	6	203	34	9	17	37	1.83
4801473--4801561	43	2.1	42	87	2	124	39	6	17	35	1.77
4801809--4802417	42	14.2	42	79	9	556	23	10	18	47	1.79
4801828--4802417	132	4.6	129	82	6	605	23	10	18	46	1.80
4801808--4802456	85	7.6	84	80	8	602	23	10	19	46	1.80
4803525--4803574	26	1.9	26	84	8	66	10	2	8	80	0.99
4803520--4803562	15	2.9	14	82	6	50	9	2	4	83	0.87
4803520--4803572	19	2.8	19	85	2	63	11	1	5	81	0.94
4803776--4803824	10	5.1	9	83	11	53	83	4	4	8	0.89
4803794--4803833	17	2.3	18	83	12	57	80	2	0	17	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4803793--4803832	9	4.6	9	84	6	55	82	2	0	15	0.77
4804643--4804704	31	2.0	31	100	0	124	22	6	12	58	1.58
4806060--4806097	19	2.0	19	89	0	58	18	34	0	47	1.49
4808605--4808674	30	2.3	31	83	11	92	38	18	0	42	1.51
4810422--4810479	30	1.9	31	89	3	91	51	0	8	39	1.33
4810512--4810547	19	1.9	18	88	5	54	50	0	0	50	1.00
4816256--4816301	22	2.1	22	87	0	65	50	2	2	45	1.26
4817589--4817655	32	2.1	31	86	2	89	49	4	2	43	1.38
4817589--4817673	16	5.4	16	77	2	73	45	5	5	42	1.52
4819832--4819988	52	3.0	51	89	1	224	38	8	26	26	1.84
4822756--4822797	14	2.9	15	89	7	68	66	4	2	26	1.23
4826210--4826475	133	2.0	133	99	0	523	34	15	13	36	1.86
4830204--4830248	22	2.0	22	95	0	81	42	11	6	40	1.67
4835544--4835573	15	2.0	15	100	0	60	40	40	0	20	1.52
4839560--4841349	595	3.0	595	93	1	2980	33	15	14	35	1.88
4841493--4842036	241	2.3	241	91	1	869	34	15	14	36	1.88
4841765--4842667	304	3.0	301	84	3	1168	33	14	15	36	1.88
4845957--4846201	80	3.1	79	82	2	303	43	24	8	23	1.81
4849853--4849925	33	2.2	33	82	0	92	32	23	13	30	1.93
4852821--4852880	21	2.9	21	87	2	95	36	10	21	31	1.87
4852998--4853034	15	2.5	15	87	12	58	27	0	0	72	0.84
4853034--4853140	16	6.4	16	66	25	53	59	1	3	34	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4853068--4853153	31	2.9	30	73	22	83	59	2	3	34	1.27
4853112--4853159	24	2.0	24	95	0	87	64	0	4	31	1.12
4865367--4865447	36	2.2	36	86	4	110	61	1	3	33	1.21
4868678--4868719	18	2.6	16	79	17	50	57	0	40	2	1.12
4869176--4869262	30	2.9	30	75	14	88	40	9	3	47	1.52
4871062--4871097	16	2.1	16	90	10	54	72	0	0	27	0.85
4871487--4871521	3	11.7	3	100	0	70	65	0	0	34	0.93
4878012--4878059	3	16.7	3	89	8	73	68	2	0	29	1.01
4887231--4887255	2	12.5	2	100	0	50	52	0	0	48	1.00
4887108--4887359	130	1.9	130	91	0	414	43	8	11	35	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77