genome.fa.s179.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  21  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4010803--4010844	15	2.7	15	82	13	50	69	4	2	23	1.20
4010931--4011000	31	2.3	31	80	7	81	50	0	4	45	1.21
4012849--4012900	28	2.0	25	85	11	68	44	3	5	46	1.45
4022814--4022869	12	4.1	13	73	17	51	14	7	12	66	1.44
4025055--4025112	27	2.3	27	91	8	95	56	0	0	43	0.99
4025054--4025115	25	2.6	24	83	16	76	56	0	0	43	0.99
4025097--4025141	17	2.9	16	83	9	58	66	0	0	33	0.92
4025118--4025183	20	3.2	21	73	16	66	65	0	0	34	0.93
4026118--4026276	78	2.0	78	91	2	257	57	5	5	32	1.42
4026145--4026312	78	2.2	78	82	4	196	57	6	7	28	1.50
4026652--4026766	31	3.7	31	82	1	115	43	13	4	39	1.63
4028416--4028643	113	2.0	113	99	0	447	40	8	6	44	1.61
4030260--4030293	17	1.9	18	88	5	52	41	0	8	50	1.34
4036011--4036069	31	1.9	31	89	0	91	23	5	16	54	1.62
4036349--4036388	18	2.2	18	90	4	62	17	5	2	75	1.10
4040660--4040693	11	3.1	11	86	0	50	76	0	11	11	1.02
4041825--4041868	14	3.1	14	83	6	54	25	20	15	38	1.92
4042244--4042363	44	2.7	46	78	11	124	34	8	18	39	1.81
4042461--4042571	43	2.5	44	81	5	127	29	9	12	48	1.72
4042409--4042551	43	3.3	43	74	6	121	29	12	14	43	1.82
4042546--4042637	43	2.1	44	88	6	134	27	9	11	51	1.70
4043671--4043717	14	3.4	14	82	8	60	23	0	10	65	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4046651--4046693	14	2.9	14	83	10	50	69	2	11	16	1.28
4048187--4048249	22	2.8	23	79	11	69	50	4	0	44	1.23
4048189--4048277	44	2.0	43	82	6	108	49	5	3	41	1.43
4048190--4048317	21	6.0	21	66	8	71	50	7	3	38	1.48
4048392--4048919	45	11.9	45	71	8	330	44	8	7	40	1.62
4048465--4048653	44	4.3	42	74	9	128	47	7	5	39	1.56
4048580--4048699	23	5.3	23	68	13	79	46	10	5	37	1.61
4048780--4048826	21	2.2	21	84	0	67	48	12	4	34	1.61
4048570--4048886	176	1.8	175	81	5	397	42	9	7	40	1.66
4048418--4048913	89	5.6	89	76	7	312	44	8	7	39	1.63
4048811--4048886	23	3.3	23	67	9	66	39	9	7	43	1.66
4054079--4054153	37	2.0	37	84	5	98	42	2	9	45	1.50
4054184--4054267	41	2.1	40	86	2	114	36	14	4	44	1.66
4054183--4054267	40	2.1	42	86	4	120	36	14	4	44	1.66
4056169--4056536	193	1.9	193	84	1	495	46	6	9	37	1.62
4056166--4056614	194	2.3	193	81	3	508	44	6	10	38	1.64
4059692--4059747	29	1.9	29	82	13	71	58	5	1	33	1.31
4060273--4060314	17	2.4	18	80	11	52	71	2	2	23	1.10
4062270--4062675	143	2.8	143	81	2	440	41	11	14	32	1.81
4062416--4062704	143	2.0	142	78	5	296	43	11	12	32	1.79
4070146--4070522	132	2.9	134	79	8	357	36	11	13	38	1.81
4070146--4070410	64	4.1	63	74	12	216	37	10	13	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4070410--4070556	62	2.3	63	74	12	149	36	14	13	35	1.85
4070977--4071154	88	2.0	89	89	7	274	39	10	7	42	1.69
4077761--4077794	17	2.0	17	88	0	50	17	0	17	64	1.29
4079373--4079408	2	18.5	2	88	5	56	44	2	0	52	1.15
4081015--4081123	37	3.0	37	77	4	114	41	11	16	31	1.83
4082754--4082813	30	2.0	30	90	0	93	31	13	13	41	1.83
4084952--4085039	21	4.5	19	88	4	70	27	3	0	69	1.04
4084983--4085054	3	24.0	3	97	0	135	31	0	1	66	1.00
4085211--4085255	21	2.1	21	84	8	56	33	4	6	55	1.46
4087388--4087417	8	3.8	8	95	0	51	20	26	13	40	1.89
4089798--4089836	13	2.8	14	84	11	53	87	0	7	5	0.68
4089796--4089840	12	4.0	11	82	11	56	86	0	8	4	0.69
4091325--4091535	45	4.7	44	69	8	147	41	7	12	38	1.71
4091330--4091535	90	2.3	89	78	8	229	40	6	13	39	1.71
4091459--4091546	22	3.9	22	71	5	68	39	3	11	45	1.57
4091507--4091559	22	2.4	22	77	0	61	32	7	11	49	1.67
4091461--4091622	23	7.2	22	68	10	78	35	5	13	45	1.67
4091853--4091944	34	2.7	34	69	12	80	38	10	8	42	1.71
4091927--4091981	17	3.2	17	78	0	65	38	18	10	32	1.85
4091870--4092025	85	1.8	85	81	8	192	37	13	11	37	1.81
4094212--4094252	8	5.9	7	88	11	50	41	2	0	56	1.13
4094222--4094252	15	2.1	15	93	0	53	45	3	0	51	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4094395--4094439	14	3.3	14	85	11	58	28	4	13	53	1.59
4094400--4094443	14	3.1	14	86	0	61	25	4	13	56	1.56
4094595--4094790	102	1.9	103	83	7	256	45	12	7	35	1.69
4094758--4094801	17	2.6	17	86	10	56	47	4	2	45	1.35
4107823--4107854	15	2.1	15	100	0	64	50	6	15	28	1.68
4109233--4109287	26	2.1	26	89	0	83	29	10	7	52	1.63
4110877--4110942	29	2.3	29	84	5	80	33	4	18	43	1.70
4110894--4110955	29	2.2	28	85	8	81	32	4	16	46	1.68
4113736--4113777	19	2.2	19	86	0	57	45	14	9	30	1.77
4116106--4116155	20	2.5	20	75	18	50	8	34	4	54	1.49
4117343--4117520	92	1.9	92	87	2	259	34	11	25	28	1.90
4119654--4119724	36	2.0	36	97	0	133	29	14	8	47	1.73
4127210--4127254	22	2.0	22	95	0	81	31	11	15	42	1.82
4131182--4131225	22	2.0	22	95	0	79	31	11	13	43	1.80
4136750--4136787	3	12.7	3	100	0	76	34	0	0	65	0.93
4137123--4137158	15	2.4	14	90	9	54	2	11	2	83	0.86
4137113--4137158	16	3.0	15	81	12	58	4	13	2	80	0.95
4137118--4137167	12	3.7	14	80	19	54	4	14	2	80	0.95
4137698--4137744	25	1.9	24	91	4	76	0	12	8	78	0.95
4137848--4137883	17	2.2	16	90	5	54	55	2	5	36	1.38
4137980--4138015	17	2.1	17	94	5	63	11	8	0	80	0.90
4139649--4139959	144	2.2	143	80	6	330	32	15	12	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4142458--4142561	49	2.1	50	82	8	124	57	8	15	18	1.63
4142506--4142663	74	2.2	72	79	7	167	61	8	12	17	1.55
4142506--4142659	73	2.1	71	79	10	159	61	9	12	17	1.56
4143744--4143917	71	2.4	73	78	6	187	18	15	14	50	1.78
4143872--4144017	35	4.2	34	72	6	114	18	14	16	50	1.78
4143897--4144070	70	2.5	71	81	7	185	19	16	14	48	1.81
4143752--4144089	36	9.5	36	66	10	115	19	15	14	50	1.78
4144003--4144209	107	1.9	107	80	3	238	18	14	14	52	1.75
4144145--4144222	36	2.2	36	84	4	97	14	12	19	53	1.72
4144291--4144376	36	2.4	36	84	3	102	18	9	11	60	1.57
4145422--4145466	23	1.9	24	86	13	67	40	2	8	48	1.47
4145565--4145602	19	2.2	18	86	13	53	50	0	0	50	1.00
4147680--4147745	26	2.6	26	81	11	82	46	31	0	21	1.51
4150732--4150794	27	2.3	29	78	15	71	52	1	6	39	1.37
4150802--4150838	15	2.4	16	86	4	58	72	5	0	21	1.04
4153967--4154009	3	14.3	3	100	0	86	32	0	0	67	0.91
4154646--4154679	16	2.1	16	100	0	68	5	26	11	55	1.58
4160761--4160819	21	2.8	21	84	2	73	33	13	13	38	1.84
4167439--4167590	72	2.1	73	90	6	236	32	34	14	19	1.92
4174508--4174598	41	2.2	42	88	5	132	53	7	1	37	1.37
4174801--4174841	17	2.4	17	87	4	64	41	4	0	53	1.22
4174846--4174920	32	2.3	33	84	13	93	52	5	14	28	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4174985--4175100	7	17.3	7	72	9	64	21	1	33	43	1.63
4175088--4175210	27	4.5	26	75	8	86	14	2	34	47	1.57
4175165--4175217	27	2.0	27	85	7	72	9	1	41	47	1.47
4177327--4177429	49	2.1	49	83	5	129	48	13	11	26	1.77
4177339--4177451	49	2.3	49	78	7	111	48	14	8	28	1.73
4177309--4177689	48	7.9	47	74	9	241	45	13	12	28	1.79
4177489--4177720	48	4.8	47	78	9	200	45	11	13	29	1.79
4177727--4178330	46	12.8	46	77	7	507	44	12	12	30	1.79
4177727--4178334	93	6.5	92	77	6	540	44	12	12	30	1.80
4182009--4182049	22	1.9	22	85	14	59	70	0	17	12	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77