genome.fa.s179.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  10  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1470907--1470958	19	2.6	20	80	16	63	57	0	0	42	0.98
1471052--1471158	31	3.4	29	77	15	106	50	0	0	48	1.07
1471071--1471134	24	2.6	25	69	18	62	48	1	0	50	1.10
1471167--1471212	21	2.2	21	92	0	74	43	0	0	56	0.99
1473797--1473835	15	2.7	14	88	4	51	51	0	5	43	1.24
1474446--1474489	18	2.4	19	84	3	54	54	0	0	45	0.99
1474746--1474788	7	5.7	7	79	15	50	11	0	9	79	0.95
1475676--1475728	22	2.4	21	81	12	54	60	0	0	39	0.97
1475686--1475727	14	3.1	14	77	22	54	61	0	0	38	0.96
1480115--1480217	38	2.7	39	73	1	109	38	16	12	32	1.86
1482439--1482504	11	5.5	11	76	15	60	51	1	3	43	1.26
1482444--1482501	18	3.2	18	74	11	55	50	1	1	46	1.22
1483413--1483498	3	27.7	3	81	11	102	29	1	1	68	1.04
1483902--1483948	20	2.3	20	88	0	67	25	14	8	51	1.71
1483912--1483949	20	1.9	20	100	0	76	26	10	7	55	1.61
1484292--1484323	3	10.7	3	100	0	64	31	0	0	68	0.90
1484362--1484391	15	2.0	15	93	0	51	10	0	6	83	0.81
1484434--1484780	60	5.8	60	78	6	368	49	6	11	32	1.63
1484440--1484780	121	2.9	117	88	3	479	49	6	11	32	1.63
1490699--1490723	11	2.3	11	100	0	50	44	8	12	36	1.71
1492747--1492790	21	2.1	21	82	0	52	29	11	15	43	1.82
1493039--1493204	42	4.0	40	80	8	172	22	13	22	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1493039--1493177	42	3.4	40	82	9	181	23	12	20	43	1.86
1493061--1493333	42	6.3	43	81	4	214	24	14	19	42	1.88
1493050--1493296	84	2.8	85	80	8	257	25	13	20	40	1.89
1493061--1493306	91	2.8	87	82	6	259	24	13	19	42	1.87
1493121--1493342	45	5.0	45	78	7	206	25	13	18	42	1.86
1493358--1493408	15	3.3	15	86	5	66	86	9	3	0	0.70
1493553--1493675	3	41.3	3	75	13	94	25	3	2	69	1.16
1493553--1493677	20	6.1	20	72	14	101	24	3	2	69	1.15
1493555--1493686	52	2.6	50	77	14	130	24	3	3	68	1.20
1494486--1494511	3	8.7	3	100	0	52	30	0	0	69	0.89
1494620--1494950	56	5.7	57	80	7	355	48	5	11	34	1.63
1494620--1494950	116	2.8	114	79	8	348	48	5	11	34	1.63
1494631--1494950	175	1.8	173	87	5	475	47	5	12	35	1.65
1495987--1496012	2	13.0	2	100	0	52	50	0	0	50	1.00
1498504--1498533	2	15.0	2	100	0	60	50	50	0	0	1.00
1499908--1499932	4	6.2	4	100	0	50	24	0	0	76	0.80
1500346--1500381	19	2.0	18	89	10	56	27	0	0	72	0.85
1501641--1501666	2	13.0	2	100	0	52	50	0	0	50	1.00
1502517--1502563	22	2.2	21	84	3	58	55	0	0	44	0.99
1503886--1503915	9	3.2	9	95	4	51	63	0	0	36	0.95
1503888--1503917	10	3.1	10	95	4	53	63	0	0	36	0.95
1506839--1506888	23	2.1	24	88	3	75	36	2	6	56	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1513169--1513217	25	2.0	25	87	0	71	46	0	2	51	1.12
1514943--1515152	64	3.3	64	78	5	235	39	14	8	38	1.77
1515180--1515310	64	2.0	65	91	1	210	33	11	11	43	1.77
1515323--1515433	57	1.9	58	88	1	170	40	10	10	37	1.75
1517869--1517909	21	2.0	21	85	9	57	19	17	0	63	1.31
1518699--1518761	13	5.4	13	73	19	59	50	0	0	49	1.00
1521919--1522053	45	3.0	45	90	0	216	42	14	25	17	1.87
1522009--1522086	33	2.4	33	84	0	102	43	15	23	17	1.87
1530689--1530788	49	2.0	49	82	0	119	27	13	14	46	1.81
1532560--1532740	63	2.9	63	76	5	181	37	11	17	33	1.85
1532996--1533149	63	2.4	64	81	4	177	41	11	12	33	1.80
1537154--1537468	126	2.5	126	80	5	350	38	11	14	34	1.83
1537492--1537611	64	1.9	64	85	1	170	41	7	11	39	1.70
1537492--1537625	64	2.1	64	83	1	162	43	6	10	39	1.65
1537492--1537679	63	3.0	60	79	8	144	39	7	11	41	1.70
1544036--1544625	162	3.7	159	81	3	655	34	10	14	41	1.80
1549415--1549456	12	3.4	12	81	12	50	19	0	7	73	1.05
1549468--1549512	23	2.0	23	82	8	56	20	4	0	75	0.97
1549468--1549541	34	2.1	35	85	2	96	20	5	0	74	1.01
1549520--1549571	22	2.5	20	74	22	52	11	9	1	76	1.09
1549567--1549803	58	4.1	56	87	7	302	43	8	11	35	1.73
1549567--1549803	116	2.1	115	86	10	333	43	8	11	35	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1560215--1560312	19	5.2	19	71	19	80	73	1	14	11	1.15
1560212--1560296	30	2.9	29	87	6	127	71	1	15	11	1.20
1560204--1560327	59	2.1	56	80	10	142	72	0	15	11	1.16
1560207--1560327	8	15.8	8	72	14	103	73	0	14	10	1.14
1561326--1561657	41	8.0	41	86	1	360	23	16	22	37	1.94
1561532--1561646	43	2.7	43	94	1	196	23	18	19	39	1.92
1561844--1561893	19	2.6	19	87	6	66	16	4	0	80	0.87
1561860--1561931	6	11.5	6	83	14	83	22	0	0	77	0.76
1561860--1561931	13	5.7	13	74	11	69	22	0	0	77	0.76
1561860--1561931	19	3.8	18	81	15	83	22	0	0	77	0.76
1561860--1561972	38	2.9	38	83	13	117	23	1	0	74	0.97
1561863--1561937	32	2.3	33	82	13	86	25	0	0	74	0.82
1561893--1562031	50	2.8	50	72	18	126	26	2	4	66	1.21
1561893--1561950	19	3.4	18	78	21	56	29	0	1	68	0.99
1562953--1563084	4	31.0	4	72	18	81	21	3	2	72	1.09
1563000--1563085	11	7.7	11	73	20	54	19	4	0	75	0.97
1563015--1563118	5	20.8	5	73	15	65	15	5	0	77	1.00
1562954--1563118	20	7.8	21	67	22	53	18	4	2	74	1.09
1563114--1563290	61	2.9	59	84	9	216	45	6	12	35	1.68
1563203--1563376	86	2.0	87	96	1	323	40	6	17	35	1.75
1563296--1563566	58	4.5	58	85	9	334	44	8	12	34	1.73
1563293--1563566	117	2.3	119	89	7	405	44	8	12	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1565465--1565541	29	2.6	30	79	12	95	48	0	2	49	1.15
1567467--1567499	12	2.5	13	85	14	50	39	0	3	57	1.14
1569624--1569783	80	2.0	79	82	8	191	47	5	3	43	1.42
1572237--1572275	2	20.0	2	84	5	53	56	0	0	43	0.99
1572703--1572814	20	5.5	19	68	19	66	49	4	5	41	1.46
1574682--1574726	22	2.0	22	100	0	90	26	13	17	42	1.86
1578305--1578334	3	10.0	3	100	0	60	0	0	33	66	0.92
1579316--1579407	25	3.8	24	73	20	73	63	11	0	25	1.29
1579332--1579397	6	10.8	6	79	9	71	63	9	0	27	1.24
1579332--1579401	18	3.8	18	81	10	88	64	10	0	25	1.25
1579363--1579415	18	2.9	18	88	5	63	66	7	0	26	1.18
1581834--1581862	14	2.1	14	93	6	51	41	0	13	44	1.44
1583817--1583845	14	2.1	14	100	0	58	0	41	0	58	0.98
1597888--1597930	19	2.3	19	87	0	59	69	0	0	30	0.88
1604656--1604685	4	7.5	4	100	0	60	53	0	0	46	1.00
1610238--1610307	25	2.8	25	84	0	86	41	30	8	20	1.82
1610239--1610302	13	5.1	13	71	7	51	42	28	7	21	1.81
1611082--1611339	125	2.1	126	83	5	317	41	9	11	37	1.74
1611208--1612004	184	4.3	183	86	4	1001	41	12	12	34	1.79
1619946--1620113	34	4.9	34	80	1	140	36	19	11	32	1.87
1626740--1626781	4	10.0	4	85	10	57	28	0	2	69	1.01
1627918--1627964	20	2.3	21	75	10	62	65	0	8	25	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1627993--1628050	26	2.3	24	78	16	64	44	3	8	43	1.51
1639967--1640087	62	2.0	62	93	0	206	21	12	11	54	1.69
1640029--1640315	45	6.5	44	82	6	226	24	13	17	45	1.84
1640145--1640313	88	1.9	87	85	8	236	24	15	18	41	1.89
1640529--1640572	13	3.2	14	84	12	56	13	2	0	84	0.73
1640541--1640572	16	2.1	15	94	5	55	9	0	0	90	0.45
1640541--1640572	12	2.7	12	95	0	55	9	0	0	90	0.45
1641539--1641572	5	6.6	5	86	6	50	76	0	5	17	0.98
1652907--1652949	4	10.8	4	89	0	50	41	0	6	51	1.29
1652907--1652949	6	7.2	6	83	0	50	41	0	6	51	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77