genome.fa.s179.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  44  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8597798--8597957	81	2.0	81	94	0	284	21	28	13	36	1.91
8601426--8601450	2	12.5	2	100	0	50	52	0	0	48	1.00
8602120--8602158	14	3.0	13	88	7	53	0	20	0	79	0.73
8602137--8602191	14	3.8	15	77	13	53	0	32	1	65	1.03
8602148--8602199	24	2.2	24	96	0	95	0	34	3	61	1.14
8605486--8605569	2	42.0	2	100	0	168	0	50	0	50	1.00
8605575--8605599	2	12.5	2	100	0	50	52	0	0	48	1.00
8606313--8606445	47	2.8	47	89	2	205	50	14	8	27	1.71
8606370--8606408	18	2.3	16	86	8	51	53	12	2	30	1.52
8607566--8607674	41	2.6	41	80	12	116	41	17	11	29	1.85
8610986--8611029	15	2.9	15	80	12	54	59	0	2	38	1.10
8628046--8628110	14	4.4	14	81	11	69	20	0	27	52	1.47
8628038--8628180	31	4.7	31	76	13	129	19	0	32	48	1.49
8628039--8628181	15	9.4	16	77	11	108	19	0	31	48	1.49
8629447--8629579	66	2.0	66	100	0	266	27	6	33	33	1.81
8630287--8630442	43	3.7	41	76	11	145	39	17	12	30	1.88
8632696--8632743	24	2.0	24	92	4	80	58	2	0	39	1.10
8632700--8632750	23	2.2	23	79	6	59	66	1	0	31	1.03
8633739--8633766	3	9.3	3	100	0	56	67	0	32	0	0.91
8635008--8635072	23	2.7	23	70	15	60	47	3	0	49	1.17
8636796--8636837	20	2.1	20	86	8	59	50	0	0	50	1.00
8637439--8637464	12	2.2	12	100	0	52	26	0	0	73	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8637460--8637530	13	5.6	13	72	9	58	45	0	1	53	1.09
8637483--8637589	42	2.6	40	81	11	103	50	0	0	48	1.07
8637478--8637589	22	5.2	22	67	18	67	50	0	0	49	1.06
8639265--8639304	17	2.4	17	87	4	55	20	2	22	55	1.56
8643013--8643046	2	16.5	2	87	6	50	47	5	0	47	1.26
8643081--8643364	153	1.9	153	88	3	437	41	5	5	48	1.48
8643723--8644026	152	2.0	153	89	1	468	42	4	5	47	1.47
8644248--8644278	11	2.8	11	100	0	62	64	0	6	29	1.18
8646620--8647235	22	28.1	21	67	14	117	50	4	9	35	1.57
8647016--8647235	44	5.0	44	81	4	214	50	4	8	36	1.54
8647425--8647543	43	2.7	45	74	7	129	48	5	10	35	1.61
8647396--8647625	22	10.5	22	72	6	85	46	6	10	36	1.64
8647641--8647745	22	4.8	22	75	6	97	48	8	4	38	1.55
8647727--8647811	22	3.9	22	71	11	75	45	7	9	37	1.64
8647626--8647745	44	2.7	44	80	5	127	47	9	5	38	1.57
8647647--8647811	66	2.5	65	81	9	174	47	7	6	37	1.59
8648064--8648142	22	3.5	23	79	6	83	46	6	10	36	1.63
8648300--8648492	22	8.8	22	77	6	149	46	7	7	39	1.59
8648313--8648492	66	2.7	66	80	8	172	47	7	6	38	1.58
8648722--8648764	22	2.0	22	85	0	59	44	2	6	46	1.43
8648748--8648803	24	2.3	23	79	11	60	44	3	14	37	1.62
8650651--8650679	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8651403--8651428	1	26.0	1	100	0	52	0	100	0	0	0.00
8662884--8662964	36	2.6	28	73	26	90	29	14	7	48	1.71
8662897--8662973	36	2.1	36	95	0	136	29	14	6	49	1.68
8663486--8663534	24	2.0	24	100	0	98	20	8	8	63	1.48
8665029--8665061	16	2.1	16	94	0	57	27	6	6	60	1.44
8664581--8665087	276	1.8	274	87	5	651	44	5	5	44	1.51
8667720--8667769	22	2.3	22	82	6	57	46	4	8	42	1.52
8667720--8667771	11	4.7	11	75	0	50	44	3	9	42	1.55
8667789--8667818	11	2.7	11	94	0	51	46	0	13	40	1.43
8667721--8667825	52	2.0	52	80	7	115	41	6	10	40	1.65
8667908--8667968	22	2.8	22	79	0	59	40	14	9	34	1.79
8668298--8668364	22	3.0	22	86	0	89	50	4	10	34	1.57
8668387--8668483	44	2.3	42	82	10	108	47	6	8	38	1.59
8668435--8668524	45	2.0	47	82	12	116	44	8	8	37	1.67
8668406--8668541	22	6.1	22	71	17	93	48	6	8	36	1.59
8668678--8668756	22	3.8	21	72	16	65	43	2	11	43	1.54
8668689--8668726	18	2.1	18	90	0	58	42	2	10	44	1.52
8669197--8669794	156	3.8	156	97	0	1097	38	18	14	29	1.89
8669831--8669859	8	3.6	8	100	0	58	68	10	0	20	1.18
8669828--8669867	16	2.5	16	75	0	53	77	7	0	15	0.98
8670139--8670179	19	2.2	19	90	0	64	29	14	31	24	1.95
8670242--8670308	31	2.2	31	86	5	91	29	19	23	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8670721--8670746	3	8.7	3	100	0	52	69	0	0	30	0.89
8670648--8670732	39	2.3	34	73	16	80	62	7	7	23	1.46
8671071--8671162	1	92.0	1	75	0	76	5	0	7	86	0.69
8671058--8671162	17	6.5	15	80	13	111	6	0	7	85	0.73
8671170--8671727	41	13.5	42	88	6	736	37	23	17	22	1.94
8672938--8672968	8	3.9	8	91	0	53	9	16	0	74	1.07
8673396--8673420	1	25.0	1	100	0	50	0	0	0	100	0.00
8676671--8677265	156	3.8	156	97	1	1086	37	18	14	29	1.90
8676671--8677265	311	1.9	313	95	1	1088	37	18	14	29	1.90
8677294--8677335	12	2.9	15	86	13	54	85	4	0	9	0.72
8677312--8677338	1	27.0	1	100	0	54	100	0	0	0	0.00
8677610--8677646	19	1.9	19	88	0	56	32	16	27	24	1.96
8677705--8677775	31	2.3	31	82	7	90	28	22	23	25	2.00
8678192--8678228	3	12.7	3	94	5	67	70	0	0	29	0.88
8678465--8678512	22	2.2	22	92	0	78	50	0	10	39	1.37
8678477--8678535	22	2.7	21	81	5	64	42	0	11	45	1.41
8678737--8678806	31	2.3	30	78	7	79	51	5	11	31	1.61
8678887--8678962	35	2.1	36	95	2	136	28	15	3	51	1.62
8679473--8679521	24	2.0	24	100	0	98	20	8	8	63	1.48
8681271--8681326	9	6.1	9	76	12	51	76	0	1	21	0.87
8681272--8681319	16	2.9	16	82	11	53	77	0	2	20	0.88
8681263--8681327	18	3.8	17	78	11	62	75	0	3	21	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8681263--8681327	17	3.8	16	78	10	58	75	0	3	21	0.94
8692571--8692596	5	5.2	5	100	0	52	42	38	0	19	1.51
8694030--8694055	12	2.2	12	100	0	52	26	7	50	15	1.71
8695370--8695712	111	2.9	119	87	6	540	22	27	18	31	1.97
8695937--8696103	73	2.3	73	95	0	298	20	31	13	34	1.91
8696122--8696217	45	2.1	45	88	0	138	28	25	17	29	1.98
8698592--8698833	100	2.4	99	82	4	292	37	13	14	34	1.85
8709193--8709222	2	15.0	2	100	0	60	0	50	0	50	1.00
8709222--8709259	2	19.0	2	100	0	76	50	0	0	50	1.00
8711556--8711667	17	7.2	16	79	13	119	18	1	28	50	1.57
8711556--8711658	7	13.4	7	71	20	64	19	1	27	51	1.57
8711595--8711660	32	2.0	33	91	5	107	21	1	30	46	1.60
8713079--8713120	14	2.9	14	82	3	57	4	16	0	78	0.91
8713397--8713464	22	3.0	22	75	14	59	33	14	22	29	1.94
8713636--8713679	22	2.0	22	86	0	61	36	18	15	29	1.92
8713746--8713789	22	2.0	22	86	0	61	29	18	25	27	1.98
8713416--8714121	220	3.2	219	82	4	807	37	18	21	22	1.94
8713415--8714121	330	2.1	331	83	3	870	37	18	21	22	1.94
8714090--8714132	22	1.9	23	85	4	61	32	25	18	23	1.97
8713416--8714121	110	6.4	109	82	3	733	37	18	21	22	1.94
8714093--8714142	23	2.2	22	86	10	66	30	24	20	26	1.98
8714668--8714734	22	3.0	22	77	0	71	34	13	19	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8714697--8714739	22	2.0	22	100	0	86	30	18	23	27	1.98
8714677--8714747	22	3.2	22	83	0	79	29	15	22	32	1.95
8714709--8714775	22	3.0	22	80	4	55	31	17	20	29	1.96
8714900--8714996	41	2.4	41	89	6	144	28	18	19	32	1.96
8715821--8715845	7	3.6	7	100	0	50	12	0	0	88	0.53
8720751--8720807	22	2.6	22	85	0	78	49	0	12	38	1.41
8720951--8721138	22	8.7	22	74	10	95	45	5	9	39	1.61
8721043--8721076	17	2.0	17	88	0	50	41	2	11	44	1.56
8721097--8721183	22	3.9	22	73	13	70	49	10	6	33	1.64
8721120--8721212	43	2.1	44	86	2	125	49	7	8	34	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77