genome.fa.s179.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  26  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5066524--5066563	20	2.0	21	90	5	64	37	2	2	57	1.26
5067705--5067730	3	8.7	3	100	0	52	65	0	0	34	0.93
5068358--5068387	2	15.0	2	100	0	60	50	0	0	50	1.00
5068972--5068997	10	2.6	10	100	0	52	84	0	0	15	0.62
5069185--5069211	2	13.5	2	100	0	54	51	0	0	48	1.00
5069211--5069254	2	22.5	2	90	4	72	50	0	47	2	1.13
5070352--5070395	14	3.1	14	83	3	52	43	2	0	54	1.12
5072467--5072525	29	2.0	29	83	6	75	45	3	1	49	1.28
5072781--5072837	23	2.5	23	73	0	60	7	7	8	77	1.13
5074061--5074103	23	1.9	22	85	4	59	16	2	11	69	1.28
5074082--5074151	24	2.9	24	75	10	63	21	2	14	61	1.46
5074107--5074157	23	2.2	23	82	6	59	17	0	15	66	1.25
5081528--5081553	13	2.0	13	100	0	52	30	7	15	46	1.74
5083840--5083892	9	6.4	9	75	20	53	39	0	16	43	1.49
5083840--5083885	24	2.0	23	87	8	67	39	0	17	43	1.49
5083854--5083900	7	6.3	7	77	22	51	40	0	14	44	1.46
5083845--5083899	16	3.5	16	90	5	85	40	0	14	45	1.45
5084468--5084526	6	9.8	6	75	14	50	1	20	0	77	0.85
5084468--5084529	15	3.9	15	83	10	63	1	20	0	77	0.85
5087878--5087935	31	1.9	30	86	10	82	32	6	18	41	1.78
5089924--5089996	6	11.7	6	72	18	60	61	16	2	19	1.46
5089928--5089996	24	2.8	24	82	6	84	62	15	2	18	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5090572--5090613	22	1.9	22	85	9	59	35	19	16	28	1.93
5090537--5090649	56	2.0	55	81	5	129	40	17	14	27	1.88
5093316--5093352	17	2.2	16	90	4	56	48	27	8	16	1.74
5101100--5101147	6	8.3	6	75	25	50	33	0	2	64	1.05
5101096--5101146	16	3.1	16	81	10	66	35	0	1	62	1.06
5101093--5101147	18	3.2	17	75	19	60	34	0	1	63	1.05
5101140--5101184	20	2.2	20	96	0	81	48	0	0	51	1.00
5101571--5101607	16	2.3	16	85	0	56	48	0	0	51	1.00
5101579--5101618	16	2.5	16	88	8	55	57	2	0	40	1.12
5105263--5105466	102	2.0	102	96	0	372	29	28	9	31	1.89
5108315--5108369	28	2.0	28	88	0	83	32	1	30	34	1.69
5111469--5111510	18	2.2	20	87	8	61	57	2	4	35	1.33
5114765--5114799	18	1.9	18	88	0	52	48	11	17	22	1.79
5120603--5120627	13	1.9	13	100	0	50	32	8	32	28	1.86
5120614--5120655	21	2.0	21	90	0	66	30	16	21	30	1.95
5124001--5124040	20	2.0	20	85	9	55	77	2	12	7	1.07
5125594--5125655	31	2.0	31	87	6	90	41	11	9	37	1.74
5129811--5129841	12	2.6	12	94	0	53	22	0	3	74	0.96
5131291--5131329	18	2.1	18	80	9	51	76	0	7	15	0.99
5131326--5131367	3	13.7	3	95	5	75	66	0	0	33	0.92
5131560--5132549	49	20.9	47	73	15	510	35	21	13	29	1.91
5131562--5131868	95	3.3	93	79	12	264	36	21	13	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5132019--5132546	49	10.8	49	81	10	552	34	22	13	29	1.92
5132020--5132546	98	5.4	96	85	5	613	34	22	13	29	1.92
5132020--5132546	147	3.6	144	87	4	686	34	22	13	29	1.92
5135433--5135471	16	2.4	16	87	8	53	30	0	2	66	1.05
5135491--5135553	25	2.5	26	80	12	69	31	0	6	61	1.21
5135525--5135566	14	2.9	14	86	10	50	30	0	2	66	1.04
5136505--5136543	4	9.8	4	83	10	53	20	0	2	76	0.90
5136564--5136649	16	5.2	16	74	4	73	13	8	1	76	1.06
5136563--5136652	27	3.6	25	76	18	73	13	8	1	76	1.06
5136609--5136650	22	1.9	22	85	9	59	14	9	2	73	1.18
5136663--5136822	59	2.8	58	90	2	259	45	6	11	35	1.68
5141279--5141312	9	3.8	9	88	11	52	8	0	47	44	1.34
5148147--5148175	2	14.5	2	100	0	58	51	0	0	48	1.00
5150934--5150966	8	4.2	8	88	7	50	57	0	0	42	0.98
5162047--5162090	18	2.5	18	85	10	56	25	2	0	72	0.96
5162079--5162104	11	2.4	11	100	0	52	19	0	0	80	0.71
5162514--5162557	15	2.9	15	90	9	72	54	25	0	20	1.45
5162593--5162638	15	3.3	14	82	8	58	47	32	0	19	1.50
5162507--5162696	14	12.8	14	66	11	60	48	29	1	21	1.57
5162578--5162713	28	4.7	29	73	17	104	46	29	0	23	1.58
5168026--5168065	9	4.8	8	85	11	53	15	2	0	82	0.77
5168026--5168065	17	2.4	16	84	12	53	15	2	0	82	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5168026--5168072	13	3.5	13	80	11	51	14	2	2	80	0.89
5168208--5168298	40	2.4	36	75	24	89	54	0	0	45	0.99
5169006--5169071	26	2.6	25	80	4	78	62	4	3	30	1.30
5170426--5170463	18	2.2	18	85	4	51	26	0	0	73	0.83
5171867--5171919	25	2.1	25	82	6	63	47	3	3	45	1.39
5172087--5172124	18	2.1	18	90	5	58	78	0	5	15	0.91
5172208--5172266	25	2.3	24	76	21	66	44	6	3	45	1.47
5176657--5176696	21	1.9	21	94	0	71	45	0	10	45	1.37
5184309--5184339	14	2.3	14	94	5	55	32	19	0	48	1.49
5194671--5194700	6	5.0	6	95	0	51	16	3	0	80	0.85
5195014--5195053	11	3.7	11	90	3	55	72	2	5	20	1.15
5205221--5205250	15	1.9	15	93	6	51	73	16	0	10	1.09
5206325--5206368	5	9.0	5	85	9	56	75	4	0	20	0.98
5207419--5207486	30	2.3	30	89	0	100	52	1	4	41	1.30
5213917--5214084	87	2.0	84	83	5	212	36	23	13	25	1.92
5214191--5214231	2	20.5	2	100	0	82	48	0	51	0	1.00
5221157--5221194	20	1.9	20	88	0	58	60	10	0	28	1.30
5222755--5222894	34	4.1	35	78	10	130	45	2	6	46	1.41
5222891--5222933	21	2.0	22	86	13	63	44	0	2	53	1.13
5230913--5230969	26	2.2	26	87	6	80	40	19	0	40	1.51
5232588--5232651	25	2.5	26	84	5	85	40	14	1	43	1.54
5233078--5233138	26	2.2	28	80	5	72	47	3	0	49	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5233432--5233465	2	17.0	2	100	0	68	50	0	0	50	1.00
5233577--5233626	21	2.5	20	81	12	57	44	2	4	50	1.32
5233795--5233835	19	2.2	19	86	0	55	29	7	0	63	1.21
5234416--5234461	2	23.0	2	82	8	58	47	2	2	47	1.26
5235606--5235691	28	3.2	28	71	19	76	55	0	0	44	0.99
5237137--5237172	18	2.1	18	90	10	58	50	0	2	47	1.15
5237374--5237442	32	2.1	33	89	2	104	50	7	8	33	1.61
5237946--5237990	8	5.6	8	84	10	56	64	0	0	35	0.94
5237948--5237990	12	3.8	12	81	9	54	65	0	0	34	0.93
5238341--5238373	7	4.7	7	85	14	50	87	12	0	0	0.53
5238342--5238379	13	2.8	13	92	4	58	86	10	0	2	0.66
5238761--5238793	7	4.7	7	100	0	66	57	0	27	15	1.38
5239020--5239050	15	2.1	15	93	0	53	77	0	16	6	0.97
5240168--5240193	13	2.0	13	100	0	52	30	7	30	30	1.85
5240231--5240387	62	2.5	62	79	5	156	40	7	8	43	1.65
5240533--5240561	14	2.0	15	93	6	51	27	13	13	44	1.82
5240393--5240622	104	2.2	104	87	0	325	31	13	15	40	1.86
5241400--5241481	42	2.0	42	90	4	130	35	6	21	36	1.79
5241451--5241540	43	2.1	42	87	2	126	37	12	10	40	1.76
5249100--5249251	62	2.5	62	79	5	168	36	17	15	30	1.91
5250598--5250650	15	3.3	15	73	19	52	47	15	9	28	1.76
5250573--5250907	104	3.2	104	83	0	418	42	17	11	29	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5252365--5252403	2	19.5	2	89	0	60	51	2	0	46	1.14
5255421--5255543	58	2.1	58	92	0	210	42	12	16	29	1.84
5255575--5255641	32	2.1	32	86	5	91	46	5	31	16	1.71
5255554--5255735	92	2.0	92	93	0	310	39	9	33	17	1.83
5260483--5260573	45	2.0	45	100	0	182	41	10	15	31	1.82
5262892--5262938	22	2.1	22	84	7	60	57	6	2	34	1.36
5263945--5263969	2	12.5	2	100	0	50	52	0	0	48	1.00
5267551--5267577	2	13.5	2	100	0	54	48	0	0	51	1.00
5268598--5268631	16	2.1	16	94	0	59	67	14	5	11	1.39
5269850--5269896	19	2.3	21	85	7	62	44	14	6	34	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77