genome.fa.s179.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  22  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4189158--4189196	20	2.0	20	85	9	55	33	0	33	33	1.58
4189713--4189750	17	2.2	17	86	9	51	15	15	0	68	1.22
4190272--4190400	25	5.1	25	84	1	159	48	6	13	31	1.67
4190272--4190400	51	2.6	50	83	4	152	48	6	13	31	1.67
4191028--4191082	12	4.8	11	80	12	58	0	12	1	85	0.68
4191075--4191168	47	1.9	50	85	6	131	48	9	2	39	1.48
4192557--4192662	52	2.0	52	89	3	160	26	11	18	43	1.84
4199846--4199905	31	1.9	31	93	0	102	36	10	13	40	1.78
4199847--4199913	31	2.2	31	88	0	98	38	8	11	40	1.74
4199916--4199947	2	16.0	2	100	0	64	50	0	0	50	1.00
4218555--4218603	17	2.8	18	79	14	66	63	8	10	18	1.50
4222731--4222771	21	2.0	21	85	4	57	39	17	4	39	1.71
4229515--4229594	13	5.8	13	71	12	52	71	1	1	26	1.01
4229514--4229583	26	2.8	24	81	8	86	71	1	1	25	1.03
4231528--4231560	2	16.5	2	100	0	66	48	0	0	51	1.00
4232032--4232078	17	2.6	19	83	9	55	42	6	2	48	1.40
4232706--4232748	22	2.0	22	90	9	70	30	0	2	67	1.03
4240859--4240894	2	18.0	2	88	0	54	47	0	5	47	1.25
4241722--4241796	30	2.5	30	88	2	105	48	4	8	40	1.51
4243852--4243884	12	2.8	12	100	0	66	18	0	45	36	1.49
4249346--4249390	17	2.7	17	86	10	58	57	0	0	42	0.98
4249434--4249668	41	5.7	41	75	10	178	46	3	3	46	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4249415--4249648	21	11.3	21	78	5	210	46	3	2	47	1.36
4249434--4249668	81	2.9	79	74	12	224	46	3	3	46	1.36
4249675--4249772	11	9.8	10	70	17	62	44	1	1	53	1.14
4249635--4249833	29	7.3	29	70	14	129	43	3	2	50	1.30
4249675--4249711	18	2.1	18	94	0	65	43	0	0	56	0.99
4249413--4249773	21	17.3	21	71	13	178	45	3	2	48	1.32
4249691--4249804	50	2.3	49	86	3	147	42	2	1	52	1.25
4249909--4249966	18	3.2	18	85	0	71	39	0	1	58	1.08
4249863--4249940	28	2.7	28	76	4	75	44	2	1	51	1.23
4249645--4249946	29	10.3	29	67	12	91	43	2	1	51	1.28
4249681--4249967	128	2.3	129	79	13	289	42	2	2	52	1.26
4250062--4250157	11	9.4	10	72	17	65	44	0	2	53	1.12
4250041--4250143	29	3.5	31	79	12	94	44	0	1	53	1.11
4250107--4250156	22	2.3	21	90	10	75	48	0	2	50	1.12
4250110--4250207	50	2.0	50	82	8	119	42	1	5	51	1.31
4250235--4250275	19	2.2	19	95	0	73	48	0	0	51	1.00
4251217--4251253	17	2.2	17	90	0	56	51	0	2	45	1.15
4252297--4252348	10	5.0	10	76	6	50	40	5	7	46	1.57
4252297--4252353	21	2.8	21	86	2	80	40	7	8	43	1.63
4252782--4252838	21	2.6	21	86	5	69	40	10	8	40	1.71
4252977--4253027	21	2.4	22	93	6	95	37	9	0	52	1.34
4252991--4253043	21	2.5	21	87	0	70	43	15	0	41	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4253012--4253053	21	2.0	21	85	0	57	42	21	4	30	1.73
4253125--4253162	19	2.0	19	90	10	60	31	10	2	55	1.48
4253133--4253426	22	13.3	22	68	8	85	37	11	4	47	1.58
4253199--4253301	43	2.4	43	81	6	109	42	9	1	45	1.48
4253270--4253364	46	2.0	47	83	2	120	37	9	5	47	1.59
4253231--4253412	22	8.2	22	72	7	91	37	8	5	47	1.58
4253453--4253498	22	2.1	22	87	0	65	39	2	6	52	1.40
4253779--4253912	22	6.2	22	77	2	119	36	10	10	42	1.74
4253848--4253953	43	2.5	44	80	9	112	33	8	11	46	1.70
4253903--4253944	22	1.9	22	85	0	57	35	4	11	47	1.61
4256262--4257198	332	2.8	333	87	0	1293	29	25	19	26	1.98
4257249--4257302	22	2.5	22	78	9	65	27	5	7	59	1.47
4257327--4257397	21	3.3	21	73	9	72	36	9	5	47	1.60
4257407--4257463	22	2.6	22	85	0	69	42	12	3	42	1.59
4257477--4257526	22	2.3	22	85	0	64	40	6	4	50	1.46
4257593--4257657	22	3.0	22	83	0	76	35	10	9	44	1.71
4257845--4257900	11	5.3	11	77	14	55	39	10	7	42	1.67
4257836--4257902	22	3.1	21	75	14	66	35	10	7	46	1.66
4261345--4261386	19	2.2	19	91	8	68	66	9	2	21	1.32
4263724--4263752	13	2.1	14	93	6	51	27	0	6	65	1.18
4268138--4268204	25	2.6	25	73	15	66	2	22	11	62	1.42
4272031--4272061	2	15.5	2	93	0	53	45	0	3	51	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4272667--4272696	15	2.0	15	93	0	51	43	0	0	56	0.99
4272937--4272990	23	2.3	23	81	15	67	12	9	0	77	0.98
4272945--4272993	18	2.7	18	87	9	64	8	12	0	79	0.93
4273228--4273298	32	2.2	32	87	5	99	71	1	15	11	1.20
4273292--4273325	15	2.2	16	89	5	52	73	0	17	8	1.08
4273760--4273789	12	2.6	11	90	10	51	36	0	0	63	0.95
4274126--4274165	20	2.0	21	85	5	55	57	25	2	15	1.50
4274889--4274917	2	14.5	2	100	0	58	0	0	48	51	1.00
4276144--4276180	14	2.6	14	86	0	56	56	0	0	43	0.99
4276152--4276194	14	2.9	14	86	10	50	60	2	0	37	1.10
4276395--4276444	18	2.7	18	75	3	55	78	0	12	10	0.98
4278930--4279006	24	3.2	23	81	3	91	41	10	23	24	1.85
4278912--4279013	48	2.1	48	85	0	132	37	9	22	30	1.87
4278930--4279027	12	7.9	12	76	3	79	39	10	21	28	1.86
4280547--4280618	25	3.0	24	80	13	76	61	1	4	33	1.24
4280780--4280817	19	1.9	21	89	10	62	44	0	2	52	1.14
4281053--4281094	18	2.3	18	88	8	59	45	2	0	52	1.13
4281222--4281271	24	2.1	24	88	3	75	54	0	2	44	1.11
4285369--4285402	16	2.1	16	88	5	50	76	0	2	20	0.92
4285898--4285933	2	18.0	2	94	0	63	50	2	0	47	1.15
4287401--4287444	18	2.4	18	92	0	79	50	9	4	36	1.55
4289491--4289526	19	1.9	19	94	5	65	0	19	5	75	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4291780--4291835	28	2.0	29	82	10	71	16	7	8	67	1.39
4292069--4292117	21	2.3	21	82	0	62	42	6	10	40	1.63
4303790--4303818	12	2.3	13	94	5	51	13	13	3	68	1.33
4304592--4304914	167	1.9	167	92	1	540	36	15	15	32	1.89
4306797--4306843	20	2.4	19	75	3	58	63	0	8	27	1.23
4309650--4309687	18	2.1	18	90	0	58	71	7	5	15	1.28
4311665--4311697	14	2.3	15	94	5	59	81	3	9	6	0.95
4320766--4320951	48	3.8	48	76	7	169	32	13	18	35	1.90
4320922--4320998	34	2.2	35	90	2	120	27	12	16	42	1.85
4321263--4321289	14	1.9	14	100	0	54	0	18	0	81	0.69
4321511--4321554	20	2.2	19	80	11	52	68	11	4	15	1.36
4322935--4323000	18	3.5	18	77	20	55	66	1	6	25	1.23
4333905--4333962	15	3.5	17	72	15	59	70	6	0	22	1.10
4335053--4335143	2	46.0	2	77	6	60	46	9	2	41	1.49
4336033--4336077	14	3.0	15	83	9	65	55	0	0	44	0.99
4336670--4336712	21	1.9	24	86	13	65	55	2	0	41	1.12
4340368--4340598	117	2.0	116	91	0	372	22	23	35	19	1.96
4348060--4348100	2	20.5	2	84	0	55	48	0	2	48	1.14
4369484--4369550	2	34.0	2	74	3	55	43	1	8	46	1.44
4371101--4371155	20	2.7	20	82	2	65	63	5	5	25	1.38
4372192--4372275	5	15.8	5	77	13	71	73	2	1	22	1.01
4372191--4372275	23	3.9	23	73	13	72	74	2	1	22	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4372191--4372276	41	2.1	39	81	12	93	74	2	1	22	1.00
4373072--4373176	6	17.2	6	85	3	57	67	2	2	26	1.18
4373117--4373176	3	20.0	3	92	0	102	65	1	0	33	1.03
4373175--4373239	3	21.7	3	100	0	130	33	0	32	33	1.58
4380014--4380060	16	3.1	15	85	11	60	44	6	2	46	1.40
4380185--4380226	2	20.5	2	95	4	75	50	0	2	47	1.14
4381415--4381472	20	2.9	19	80	14	64	31	1	3	63	1.21
4387230--4387259	2	15.5	2	93	6	53	50	0	50	0	1.00
4388437--4388494	20	2.9	19	80	14	64	31	1	3	63	1.21
4390849--4390886	20	1.9	20	88	0	58	31	28	10	28	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77