genome.fa.s179.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  32  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6480410--6480439	9	3.4	9	95	4	53	63	0	0	36	0.95
6484459--6484527	20	3.4	21	75	15	74	39	1	1	57	1.16
6484640--6484701	19	3.3	18	77	6	52	29	6	3	61	1.37
6484640--6484678	19	2.1	19	85	4	53	28	7	2	61	1.37
6484398--6485133	216	3.4	210	74	10	560	32	10	4	52	1.57
6485303--6485870	217	2.6	219	78	7	592	30	9	4	54	1.53
6485338--6485849	213	2.4	214	80	7	522	30	8	4	55	1.51
6489983--6490020	17	2.2	17	90	9	60	50	2	0	47	1.15
6491126--6491175	2	26.0	2	78	15	52	52	2	0	46	1.12
6491122--6491162	22	2.0	22	85	9	59	53	4	0	41	1.22
6491116--6491168	28	1.9	27	88	3	79	50	5	0	43	1.25
6492693--6492741	20	2.4	21	82	3	64	61	2	0	36	1.08
6492667--6492738	29	2.6	28	81	14	87	63	1	1	33	1.11
6492702--6492741	21	2.0	20	90	5	62	60	2	0	37	1.11
6493793--6493832	16	2.4	16	87	4	62	55	0	5	40	1.22
6494009--6494042	16	2.1	16	88	0	50	58	20	2	17	1.51
6494795--6494825	15	2.1	15	93	0	53	48	0	0	51	1.00
6496176--6496223	19	2.5	19	76	6	53	47	0	6	45	1.27
6497195--6497252	22	2.6	22	83	0	62	50	8	3	37	1.50
6497427--6497469	22	2.0	22	90	0	68	51	6	6	34	1.56
6497499--6497534	18	2.0	18	88	0	54	66	0	0	33	0.92
6499811--6499854	20	2.2	20	83	0	52	43	4	6	45	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6500273--6501154	214	4.1	212	74	13	540	31	10	6	51	1.62
6500331--6501155	215	3.8	214	75	9	594	31	10	6	51	1.61
6502403--6502449	18	2.6	18	83	10	60	23	2	4	70	1.16
6502209--6502760	214	2.5	219	79	5	620	30	8	6	54	1.54
6504350--6504384	10	3.4	10	88	4	52	42	0	2	54	1.15
6516874--6516912	18	2.1	19	85	4	53	58	5	2	33	1.33
6517620--6517649	11	2.6	12	94	5	53	26	0	0	73	0.84
6522994--6523027	17	1.9	18	88	5	52	23	38	2	35	1.70
6525164--6525222	30	1.9	32	82	6	77	55	1	0	42	1.09
6525890--6525958	31	2.2	31	89	5	104	39	8	7	44	1.63
6526852--6526896	13	3.2	13	80	17	54	46	0	2	51	1.13
6526849--6526916	29	2.2	32	82	15	90	47	1	2	48	1.26
6526852--6526906	15	3.8	14	80	20	60	47	1	1	49	1.23
6526852--6526924	14	5.5	13	73	16	60	46	1	2	49	1.24
6526863--6526943	40	2.0	40	81	9	94	48	2	2	46	1.28
6527020--6527105	31	2.8	31	78	3	93	39	3	12	44	1.60
6528728--6528851	9	13.7	9	69	17	53	57	2	2	37	1.25
6528719--6528822	18	5.8	18	65	13	63	56	0	2	40	1.14
6528917--6528950	15	2.3	15	90	10	52	82	2	0	14	0.79
6528969--6529012	19	2.3	19	84	7	54	65	2	2	29	1.16
6529134--6529197	18	3.6	18	81	10	78	29	0	6	64	1.18
6529132--6529208	18	4.4	19	77	11	67	31	1	7	59	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6529276--6529394	44	2.7	44	82	10	127	30	2	7	59	1.38
6529404--6529438	18	1.9	18	88	0	52	28	2	2	65	1.21
6530340--6530383	22	2.0	22	81	0	52	47	4	6	40	1.50
6531083--6531108	12	2.2	12	100	0	52	15	15	7	61	1.55
6532111--6532158	20	2.4	21	76	16	57	58	2	2	37	1.22
6533185--6533237	24	2.4	22	75	9	54	39	0	0	60	0.97
6546193--6546227	18	2.0	18	88	5	54	42	8	0	48	1.33
6548718--6548756	19	2.0	20	85	5	53	51	0	0	48	1.00
6549033--6549062	2	15.5	2	93	6	53	50	0	0	50	1.00
6549676--6549706	2	15.5	2	93	0	53	48	0	0	51	1.00
6552006--6552037	2	16.5	2	93	6	57	50	0	0	50	1.00
6557622--6557651	11	2.6	11	94	5	51	63	0	3	33	1.11
6559703--6559775	37	2.0	37	88	0	110	49	9	15	26	1.74
6562892--6562954	31	2.0	31	93	0	108	28	0	7	63	1.22
6565178--6565229	14	3.9	14	73	17	56	38	1	0	59	1.08
6566261--6566299	20	2.0	20	90	9	64	69	0	0	30	0.89
6568523--6568579	18	3.2	18	78	11	55	71	0	17	10	1.12
6574688--6574726	20	1.9	21	94	5	71	35	0	2	61	1.10
6574819--6574854	17	2.2	17	90	5	56	27	2	2	66	1.19
6578324--6578419	47	2.0	47	100	0	192	17	22	10	48	1.77
6583765--6583903	69	2.0	69	85	0	188	24	26	20	28	1.99
6587543--6587588	8	5.8	8	82	10	58	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6587542--6587589	24	2.0	24	91	0	78	37	0	0	62	0.95
6587551--6587593	16	2.9	15	89	6	61	41	0	0	58	0.98
6587600--6587650	26	2.0	25	84	3	66	41	7	7	43	1.63
6587838--6587872	17	2.0	18	88	5	54	45	0	0	54	0.99
6590714--6590759	24	1.9	24	100	0	92	17	23	23	34	1.96
6592045--6592073	14	2.1	14	100	0	58	48	13	0	37	1.43
6596326--6596459	62	2.2	63	78	11	143	38	8	11	41	1.72
6597063--6597193	63	2.1	63	82	4	158	37	9	10	42	1.72
6598909--6598968	27	2.1	29	82	11	72	50	0	1	48	1.11
6598975--6599023	21	2.3	21	79	6	55	44	0	0	55	0.99
6599250--6599317	19	3.6	19	72	24	63	45	1	2	50	1.26
6602921--6603044	62	2.0	62	91	0	203	35	14	12	37	1.83
6612461--6612522	31	2.0	31	81	6	72	35	35	6	22	1.80
6613885--6613929	18	2.5	20	75	20	53	55	2	0	42	1.12
6614001--6614038	17	2.2	18	86	13	53	36	0	0	63	0.95
6629897--6629924	14	2.0	14	100	0	56	35	28	0	35	1.58
6632388--6632446	21	2.6	23	81	15	77	50	0	0	49	1.00
6632394--6632438	21	2.1	21	95	0	81	46	0	0	53	1.00
6633360--6633410	15	3.4	15	75	5	50	52	1	0	45	1.12
6635788--6635814	2	13.5	2	100	0	54	48	0	0	51	1.00
6636441--6636490	23	2.3	23	80	16	61	64	4	0	32	1.12
6636532--6636577	15	3.0	15	83	3	56	50	6	0	43	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6638928--6638967	20	2.2	20	86	13	59	50	5	10	35	1.58
6640826--6640885	29	2.1	29	93	0	102	21	11	33	33	1.90
6641637--6641806	90	1.9	88	85	7	238	32	18	18	30	1.95
6641864--6641919	29	2.0	28	82	6	69	41	0	7	51	1.29
6642135--6642290	81	1.9	81	85	5	217	31	9	14	44	1.77
6645432--6645459	7	4.0	7	100	0	56	85	0	0	14	0.59
6650543--6650570	3	9.3	3	100	0	56	32	0	0	67	0.91
6651451--6651484	14	2.5	14	90	4	52	44	5	0	50	1.26
6653105--6653169	31	2.1	31	97	0	121	32	24	3	40	1.71
6653894--6653973	41	2.0	41	92	0	133	42	5	6	46	1.51
6657845--6657892	21	2.3	21	96	0	87	62	12	4	20	1.46
6660425--6660541	41	2.7	43	76	12	107	27	0	7	64	1.20
6660467--6660577	55	2.1	55	80	13	124	23	2	5	68	1.23
6661000--6661067	31	2.2	31	82	10	86	26	23	23	26	2.00
6661388--6661425	5	7.6	5	100	0	76	18	42	39	0	1.50
6661503--6661530	13	2.2	13	100	0	56	14	0	7	78	0.95
6661642--6661695	27	2.0	27	92	7	92	37	14	3	44	1.63
6661669--6662041	59	6.2	59	83	10	454	45	8	12	33	1.73
6665825--6665891	7	9.4	7	82	6	73	80	0	14	4	0.86
6665817--6665891	16	5.0	16	81	14	81	78	0	16	5	0.92
6665827--6665881	28	2.0	28	89	3	85	83	0	12	3	0.77
6665818--6665889	34	2.1	35	84	10	94	80	0	13	5	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6666567--6666600	12	2.8	12	90	0	59	32	0	17	50	1.47
6667137--6667710	42	14.0	41	88	7	823	22	18	21	37	1.94
6667137--6667710	82	7.0	81	92	5	876	22	18	21	37	1.94
6667717--6667805	9	10.3	9	87	10	116	87	12	0	0	0.54
6667717--6667805	17	5.2	17	86	10	128	87	12	0	0	0.54
6667717--6667797	1	81.0	1	80	0	81	88	11	0	0	0.50
6667717--6667796	8	9.6	8	85	14	101	88	11	0	0	0.51
6668099--6668135	14	2.4	17	86	13	53	16	5	2	75	1.10
6669159--6669618	116	3.9	117	83	10	533	45	7	13	33	1.72
6669142--6669636	60	8.3	59	78	11	465	46	8	12	32	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77