genome.fa.s179.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  43  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8412651--8412685	16	2.1	17	94	5	63	51	0	0	48	1.00
8412648--8412684	19	1.9	19	88	0	56	51	0	0	48	1.00
8415128--8415427	154	1.9	157	86	7	430	34	19	13	33	1.90
8416212--8416283	30	2.5	29	71	10	67	58	1	8	31	1.36
8418391--8418419	2	14.5	2	100	0	58	51	0	0	48	1.00
8419833--8419901	32	2.2	31	89	2	102	55	11	0	33	1.36
8429557--8429870	42	7.4	41	81	11	348	26	13	21	38	1.91
8429557--8430094	82	6.7	82	78	14	444	26	15	20	37	1.92
8429695--8429870	91	1.9	91	87	2	255	25	14	22	38	1.91
8429842--8429898	28	2.0	28	96	0	105	26	17	15	40	1.90
8429870--8430099	42	5.7	41	75	11	208	25	16	19	38	1.92
8429969--8430080	34	3.0	36	68	19	95	24	17	18	39	1.92
8429930--8430080	76	2.0	76	97	0	284	24	17	17	39	1.91
8430119--8430263	41	3.5	42	83	5	181	26	13	16	43	1.85
8430661--8430690	2	15.0	2	92	0	51	46	0	0	53	1.00
8434371--8434412	21	2.0	21	85	4	57	73	2	14	9	1.18
8434382--8434431	18	2.9	18	88	5	68	66	0	22	12	1.24
8437584--8437629	22	2.1	22	84	8	58	21	2	17	58	1.49
8440690--8440732	22	1.9	22	86	13	61	20	2	6	69	1.23
8440953--8441192	123	2.0	123	82	5	297	52	6	5	35	1.50
8444639--8444874	64	3.7	63	78	5	201	43	8	12	34	1.74
8445015--8445280	62	4.3	62	75	3	196	39	14	12	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8445106--8445301	61	3.2	61	78	5	205	39	14	12	34	1.83
8445126--8445287	63	2.6	62	81	5	195	41	16	10	30	1.82
8445106--8445310	63	3.3	61	75	10	184	38	13	12	36	1.82
8445461--8445680	62	3.5	62	74	4	167	37	10	15	37	1.81
8447262--8447298	19	1.9	20	88	5	58	27	5	0	67	1.12
8451180--8451242	3	21.0	3	100	0	126	33	0	0	66	0.92
8458173--8458397	117	1.9	116	88	0	342	26	24	13	36	1.92
8462069--8462115	9	5.0	9	80	10	58	48	4	0	46	1.21
8462069--8462115	19	2.5	19	85	0	76	48	4	0	46	1.21
8461945--8462166	121	1.8	123	84	1	304	36	6	6	50	1.56
8462401--8462440	22	1.9	20	90	10	62	70	7	2	20	1.24
8464901--8465067	85	2.0	86	87	1	246	37	9	5	46	1.61
8469350--8469388	16	2.4	16	86	0	51	46	7	7	38	1.61
8473244--8473318	31	2.4	31	84	0	96	53	8	22	16	1.68
8473698--8473831	71	1.9	71	90	3	216	29	12	11	46	1.78
8476650--8476686	2	18.5	2	100	0	74	51	0	0	48	1.00
8477634--8477699	3	21.7	3	74	20	57	71	0	1	27	0.95
8477634--8477703	15	4.8	15	75	22	69	71	0	1	27	0.94
8477624--8477685	21	2.9	20	75	20	54	70	0	3	25	1.02
8477632--8477703	23	3.2	22	75	24	55	70	0	1	27	0.95
8477634--8477709	20	3.7	20	73	15	66	71	0	2	26	1.00
8477841--8477878	19	1.9	19	89	5	58	68	0	18	13	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8477845--8477878	18	1.9	17	88	5	50	70	0	17	11	1.16
8480241--8480319	10	7.5	11	68	18	53	72	1	3	22	1.08
8480259--8480354	16	6.1	15	77	12	61	76	3	5	15	1.10
8480256--8480298	22	2.0	22	86	9	61	74	0	4	20	1.00
8480288--8480346	17	3.6	16	80	13	57	77	5	3	13	1.05
8480304--8480351	17	2.9	17	81	3	53	79	4	6	10	1.05
8482341--8482373	3	11.0	3	100	0	66	33	0	0	66	0.92
8484086--8484131	4	12.2	4	77	13	53	45	26	2	26	1.65
8484093--8484131	15	2.7	14	84	7	60	46	28	2	23	1.65
8484850--8485023	72	2.4	72	84	3	224	17	21	24	35	1.95
8486702--8486727	12	2.2	12	100	0	52	46	0	7	46	1.31
8486746--8486780	14	2.5	14	90	0	52	65	5	0	28	1.15
8486760--8486803	19	2.3	18	88	7	61	59	2	0	38	1.10
8493408--8493449	15	2.7	16	77	7	50	66	2	2	28	1.16
8493864--8493891	13	2.2	13	100	0	56	50	14	7	28	1.69
8494571--8494605	14	2.5	14	85	0	52	14	11	0	74	1.08
8501339--8501502	76	2.2	75	83	8	201	28	7	7	56	1.54
8501640--8501690	11	4.6	11	79	13	52	70	0	1	27	0.98
8501640--8501699	22	2.7	23	78	14	56	70	0	3	26	1.03
8501842--8501878	13	2.8	13	87	0	56	67	16	0	16	1.23
8502565--8502874	103	3.0	104	90	4	504	39	23	12	24	1.89
8505173--8505210	19	2.0	19	85	10	51	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8505173--8505210	13	3.0	13	85	14	53	68	0	0	31	0.90
8505505--8505699	85	2.3	85	82	4	216	42	15	13	28	1.85
8507286--8507378	32	3.0	31	79	3	105	52	12	1	33	1.47
8515654--8515699	14	3.0	16	78	18	53	8	4	6	80	1.01
8518311--8518349	20	1.9	20	84	5	51	20	10	0	69	1.17
8518322--8518399	33	2.4	33	80	16	83	17	5	2	74	1.12
8518608--8518651	23	1.9	23	81	9	54	75	4	2	18	1.09
8527983--8528029	3	15.7	3	100	0	94	65	0	0	34	0.93
8528705--8529519	377	2.2	376	92	0	1360	26	23	30	19	1.98
8530525--8530611	44	2.0	43	84	6	113	37	14	9	37	1.79
8532974--8533359	195	2.0	197	95	1	695	36	15	11	36	1.84
8533412--8533440	12	2.5	12	94	5	51	31	0	0	68	0.89
8535259--8535767	48	10.8	46	88	6	706	35	24	13	26	1.92
8535259--8535767	94	5.4	92	88	4	736	35	24	13	26	1.92
8544130--8544177	20	2.5	19	80	6	60	8	2	6	83	0.88
8544655--8545029	194	1.9	193	95	1	671	36	15	11	36	1.83
8546746--8546781	3	12.0	3	100	0	72	66	0	0	33	0.92
8549670--8549829	62	2.6	61	74	12	157	33	16	11	38	1.85
8549990--8550163	64	2.7	63	75	11	151	32	13	12	42	1.81
8553676--8553714	18	2.2	18	90	0	60	35	2	2	58	1.25
8553775--8553855	29	2.7	30	81	7	112	37	1	3	58	1.24
8555101--8555153	27	2.0	27	88	0	79	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8555294--8555349	24	2.3	25	81	9	62	50	1	0	48	1.11
8560251--8560309	23	2.5	23	78	10	57	10	10	10	69	1.37
8560355--8560391	18	2.0	19	94	5	67	5	0	13	81	0.86
8560669--8560701	13	2.5	13	95	0	57	12	0	9	78	0.95
8560669--8560734	7	9.4	7	71	12	55	13	3	10	72	1.22
8560658--8560701	13	3.3	12	87	12	52	9	2	9	79	1.02
8561410--8561454	24	1.9	24	86	4	65	46	0	0	53	1.00
8561417--8561476	16	3.6	16	76	10	50	41	0	0	58	0.98
8561443--8561482	18	2.2	19	90	4	64	47	0	0	52	1.00
8561443--8561485	19	2.3	19	88	8	61	48	0	0	51	1.00
8561444--8561495	20	2.6	21	79	17	65	44	0	0	55	0.99
8563960--8563985	11	2.4	11	100	0	52	34	34	19	11	1.88
8564255--8564315	29	2.1	29	87	0	86	37	27	22	11	1.89
8572536--8572592	24	2.4	24	87	0	87	40	24	14	21	1.90
8573194--8573229	18	1.9	18	88	5	54	2	13	2	80	0.93
8573350--8573414	12	5.4	12	70	14	53	23	1	9	66	1.29
8575809--8575841	18	1.9	17	88	11	50	48	12	6	33	1.65
8575774--8575881	47	2.3	46	85	3	155	55	13	5	25	1.60
8575875--8575925	22	2.3	22	86	0	66	60	9	3	25	1.45
8576050--8576098	17	2.9	16	85	14	55	73	0	22	4	1.00
8576064--8576098	6	6.2	6	93	6	56	71	0	28	0	0.86
8576342--8576393	19	2.7	19	84	0	50	53	17	15	13	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8576348--8576393	19	2.4	19	88	0	65	58	17	13	10	1.62
8577234--8577391	43	3.7	43	80	8	151	39	24	12	24	1.89
8577234--8577360	45	2.9	45	83	4	125	38	25	10	25	1.87
8579202--8579251	24	2.0	25	96	3	93	58	0	0	42	0.98
8579207--8579258	24	2.2	24	82	6	61	67	0	0	32	0.91
8581159--8581203	16	2.8	16	82	0	63	66	2	0	31	1.04
8583993--8584022	15	2.1	15	93	6	53	63	0	13	23	1.29
8597710--8597956	36	6.8	36	81	13	299	20	29	12	37	1.90
8597709--8597855	66	2.2	66	90	2	224	19	29	12	38	1.89
8597832--8597957	45	3.0	43	80	17	158	23	27	12	36	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77