genome.fa.s179.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  33  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6672893--6672920	2	14.0	2	100	0	56	0	50	0	50	1.00
6672920--6672955	2	18.0	2	94	0	63	50	2	0	47	1.15
6676479--6676505	8	3.4	8	100	0	54	51	0	0	48	1.00
6677608--6677637	12	2.5	12	94	0	51	13	0	13	73	1.10
6682091--6682154	31	2.1	31	84	0	83	73	1	10	14	1.17
6683320--6683369	20	2.4	21	80	6	57	34	4	16	46	1.65
6683373--6683412	21	1.9	21	89	0	62	37	10	12	40	1.77
6683437--6683557	24	5.4	23	69	18	69	35	8	15	40	1.78
6683477--6683610	45	3.0	45	81	5	135	38	8	14	38	1.76
6683373--6683611	22	10.8	22	67	14	116	38	9	13	39	1.77
6683497--6683588	23	4.0	23	70	16	73	40	7	11	40	1.71
6683757--6683881	31	4.0	31	81	1	142	43	11	11	34	1.76
6683892--6683955	18	3.6	18	79	8	69	50	15	4	29	1.65
6683889--6683937	17	2.8	17	87	3	71	44	18	6	30	1.74
6683889--6683961	35	2.1	35	87	5	103	43	16	6	32	1.74
6683951--6683983	17	1.9	17	93	0	57	33	9	18	39	1.82
6683979--6684062	18	4.7	18	82	2	89	40	4	10	44	1.60
6683953--6684073	53	2.3	52	80	4	134	38	6	12	42	1.69
6683951--6684071	18	6.9	17	77	5	80	37	6	13	42	1.70
6683988--6684060	35	2.1	35	86	0	101	41	2	10	45	1.54
6687797--6687864	30	2.3	30	82	10	86	38	7	2	51	1.45
6696516--6696673	52	3.0	52	84	7	185	39	8	26	25	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6697158--6697225	30	2.2	31	92	2	111	30	25	20	23	1.98
6699116--6699165	22	2.3	22	96	0	91	52	12	12	24	1.72
6702969--6703014	22	2.3	20	82	17	60	50	0	2	47	1.13
6704646--6704689	17	2.6	18	82	10	56	29	2	0	68	1.02
6706644--6706674	16	1.9	16	93	0	53	25	0	0	74	0.82
6712003--6712191	95	2.0	95	83	2	236	39	17	12	30	1.87
6712128--6712164	14	2.9	14	84	15	53	40	24	8	27	1.83
6714072--6714147	38	2.0	37	89	2	116	28	15	19	35	1.93
6716885--6716931	18	2.5	19	80	13	53	36	0	2	61	1.08
6723029--6723081	25	2.1	25	100	0	106	41	20	15	22	1.89
6723054--6723417	142	2.6	141	88	2	525	41	17	12	29	1.85
6743979--6744042	31	2.1	31	96	0	119	21	7	23	46	1.77
6747476--6747522	24	2.0	24	87	8	69	70	4	0	25	1.05
6749442--6749484	21	2.0	22	90	9	70	16	6	0	76	0.99
6749442--6749484	11	3.8	12	79	17	56	16	6	0	76	0.99
6750773--6750823	21	2.3	23	80	12	63	68	3	7	19	1.30
6754858--6754895	20	1.9	20	88	0	58	7	15	2	73	1.17
6758978--6759374	145	2.7	145	83	5	491	34	14	9	41	1.78
6760052--6760116	24	2.7	24	79	9	69	56	4	27	10	1.53
6762816--6762867	15	3.4	15	78	5	59	80	5	5	7	1.01
6764435--6764467	15	2.2	15	89	10	50	27	9	0	63	1.24
6766392--6766451	29	2.1	29	100	0	120	40	6	3	50	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6769135--6769225	30	3.0	30	95	0	164	48	6	20	24	1.73
6770409--6770452	22	2.0	22	90	0	70	34	11	11	43	1.77
6770596--6770645	26	2.0	26	84	11	68	22	16	12	50	1.77
6777603--6777631	2	14.5	2	100	0	58	48	0	0	51	1.00
6779261--6779299	2	19.5	2	84	10	53	2	48	0	48	1.15
6783438--6783481	22	2.0	22	95	0	79	43	13	11	31	1.80
6783441--6783493	22	2.4	22	84	6	54	49	9	11	30	1.70
6787120--6787168	25	2.0	25	100	0	98	40	18	24	16	1.90
6787334--6787377	22	2.0	22	95	0	79	43	13	11	31	1.80
6793463--6793519	27	2.1	27	93	0	96	31	17	17	33	1.93
6798089--6798181	49	1.9	48	89	6	143	31	7	12	48	1.69
6798169--6798300	63	2.1	64	87	2	187	42	11	8	37	1.71
6798189--6798566	165	2.3	162	77	4	434	45	8	7	38	1.64
6798395--6798652	101	2.6	100	83	4	279	46	7	7	37	1.62
6798526--6798603	37	2.1	37	85	4	104	55	7	3	33	1.47
6798426--6798652	101	2.3	100	84	6	282	48	7	6	37	1.59
6802587--6802637	22	2.2	24	86	6	70	45	1	1	50	1.24
6803233--6803265	17	1.9	17	93	0	57	18	3	3	75	1.06
6803300--6803346	17	2.7	18	80	9	62	53	0	2	44	1.12
6803528--6803580	21	2.5	22	85	11	76	45	20	0	33	1.52
6804990--6805015	2	13.0	2	100	0	52	50	0	0	50	1.00
6813934--6813976	19	2.3	19	88	4	61	81	0	11	6	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6820470--6820511	22	1.9	22	85	0	57	42	4	9	42	1.58
6821960--6821992	6	5.7	6	85	7	50	84	15	0	0	0.61
6821960--6821992	17	1.9	17	93	0	57	84	15	0	0	0.61
6821960--6821992	11	2.8	12	86	9	50	84	15	0	0	0.61
6830324--6830361	13	2.7	15	80	19	55	34	5	0	60	1.19
6830332--6830363	12	2.5	13	95	5	57	31	3	0	65	1.08
6833760--6833789	13	2.4	12	94	5	51	43	0	0	56	0.99
6838428--6838463	18	2.1	17	89	5	54	36	0	0	63	0.94
6838443--6838484	21	1.9	21	81	18	50	42	0	0	57	0.99
6839274--6839428	82	1.9	81	80	10	181	25	27	5	41	1.76
6839328--6839509	82	2.2	80	80	9	183	24	27	4	43	1.73
6841786--6841823	18	2.0	20	85	10	53	57	5	0	36	1.21
6855109--6855146	3	12.7	3	100	0	76	31	0	0	68	0.90
6876781--6876915	2	67.5	2	69	13	73	43	4	3	48	1.41
6879484--6879514	16	1.9	16	93	0	53	19	25	12	41	1.87
6879575--6879728	77	2.0	77	100	0	308	38	20	11	28	1.88
6894172--6894207	17	2.2	17	90	5	56	19	22	8	50	1.74
6898291--6898333	16	2.9	16	80	13	56	58	0	0	41	0.98
6899877--6899932	24	2.7	19	76	23	67	37	0	0	62	0.95
6902482--6902730	10	25.6	10	71	13	103	53	5	2	38	1.35
6902486--6902844	10	37.8	9	66	17	72	55	4	2	37	1.33
6902490--6902562	31	2.4	28	78	14	74	52	6	1	39	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6902482--6902729	19	12.8	19	69	16	98	54	5	2	38	1.35
6902632--6902709	28	2.8	29	70	16	74	53	0	2	43	1.14
6902638--6902709	27	2.6	28	72	16	69	52	0	2	44	1.15
6902684--6902725	17	2.5	17	92	0	66	54	4	0	40	1.21
6902742--6902780	16	2.5	16	87	4	53	51	2	0	46	1.14
6902773--6902838	16	4.1	16	75	9	53	65	3	1	30	1.17
6902870--6902905	19	1.9	19	88	5	56	38	0	5	55	1.23
6902949--6902997	24	2.0	24	88	4	71	67	6	6	20	1.35
6903082--6903165	20	4.0	22	77	14	63	38	3	5	52	1.43
6903097--6903165	20	3.3	20	81	4	66	34	4	4	56	1.39
6903084--6903156	21	3.4	21	78	16	62	41	4	4	50	1.40
6904078--6904108	14	2.2	14	94	0	53	0	16	0	83	0.64
6912850--6912888	16	2.8	13	85	14	51	61	0	0	38	0.96
6915731--6915761	15	2.0	16	93	6	55	51	6	0	41	1.27
6921416--6921478	24	2.6	23	75	7	63	65	7	15	11	1.47
6921912--6921949	13	2.8	14	88	4	51	13	2	2	81	0.90
6923933--6923982	22	2.2	23	86	10	68	18	0	36	46	1.49
6923994--6924043	14	3.4	14	80	5	55	22	0	32	46	1.52
6923980--6924033	21	2.5	22	77	16	60	18	1	29	50	1.58
6924006--6924142	52	2.5	54	77	15	147	18	1	32	47	1.58
6924090--6924141	14	3.7	14	71	0	50	17	0	30	51	1.45
6924196--6924267	29	2.5	28	71	6	72	22	2	27	47	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6924387--6924461	3	25.3	3	76	12	57	32	1	2	64	1.16
6924384--6924435	17	3.0	17	91	2	77	40	0	1	57	1.10
6924391--6924435	15	3.1	15	90	3	65	40	0	2	57	1.11
6924740--6924783	21	2.1	20	91	8	70	81	2	0	15	0.78
6932964--6933099	59	2.3	58	78	5	148	45	11	14	28	1.79
6936362--6936465	52	2.0	51	84	1	136	43	5	21	29	1.75
6941213--6941305	40	2.3	40	96	0	168	31	17	13	37	1.89
6941522--6941633	42	2.7	42	85	2	145	37	14	20	27	1.91
6948693--6948731	20	1.9	21	85	15	55	25	0	2	71	0.98
6952957--6953008	20	2.6	20	81	0	68	53	1	3	40	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77