genome.fa.s179.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  8  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1169530--1169574	22	2.0	22	91	0	72	24	20	20	35	1.96
1173316--1173366	22	2.4	22	86	3	68	35	0	1	62	1.06
1173588--1173628	20	2.0	20	95	0	73	41	4	7	46	1.53
1174443--1174477	16	2.2	16	89	0	52	8	0	20	71	1.11
1174599--1174631	17	1.9	17	88	11	50	27	0	21	51	1.48
1174800--1174828	2	14.5	2	100	0	58	48	0	0	51	1.00
1175513--1175548	18	2.0	18	89	10	56	38	5	27	27	1.79
1177034--1177078	4	11.2	4	82	0	54	55	2	0	42	1.12
1177034--1177078	6	7.5	6	89	0	54	55	2	0	42	1.12
1181281--1181321	21	2.0	21	90	0	64	51	0	9	39	1.35
1182348--1182380	16	2.1	16	88	5	50	60	0	9	30	1.27
1183245--1183293	21	2.3	21	85	0	62	32	4	26	36	1.75
1184488--1184527	16	2.6	16	88	11	57	12	2	7	77	1.07
1184529--1184672	33	4.3	35	66	18	92	31	4	2	61	1.28
1184596--1184681	3	27.3	3	80	13	93	32	3	0	63	1.11
1184596--1184689	41	2.3	41	87	7	129	30	4	0	64	1.12
1185512--1185553	5	8.4	5	80	19	52	16	2	0	80	0.81
1185506--1185546	12	3.6	11	87	12	57	17	4	0	78	0.93
1185515--1185558	17	2.7	16	86	10	54	15	4	0	79	0.89
1185549--1185732	59	3.2	56	79	12	210	44	7	9	38	1.65
1185566--1185791	58	3.8	57	83	7	249	42	6	12	38	1.68
1185852--1185900	21	2.3	20	80	10	53	6	6	6	81	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1196244--1196295	24	2.1	25	89	10	81	82	0	5	11	0.82
1196238--1196295	9	6.8	9	81	15	61	81	0	6	12	0.88
1196252--1196308	23	2.5	24	86	8	75	80	0	10	8	0.90
1197308--1197604	41	7.1	42	79	6	205	26	13	20	40	1.89
1197525--1197643	45	2.7	45	89	1	177	22	10	18	47	1.79
1197942--1198013	16	4.5	16	86	10	87	13	1	4	80	0.92
1197942--1198013	8	9.0	8	82	13	78	13	1	4	80	0.92
1197938--1198051	8	14.2	8	74	18	60	21	1	2	74	1.03
1198011--1198098	31	2.7	31	77	13	90	31	4	3	60	1.34
1198079--1198114	16	2.2	17	95	5	65	33	5	0	61	1.19
1198035--1198110	31	2.6	28	77	18	75	30	5	3	60	1.37
1198114--1198157	15	3.0	14	84	15	54	9	9	0	81	0.87
1198385--1198427	22	2.0	21	86	13	61	27	2	20	48	1.62
1198995--1199019	13	1.9	13	100	0	50	20	0	0	80	0.72
1199035--1199254	60	3.7	59	85	8	277	46	6	12	35	1.67
1199035--1199254	119	1.8	119	88	1	334	46	6	12	35	1.67
1199317--1199371	26	2.2	25	83	3	65	3	9	5	81	0.95
1200871--1200941	32	2.3	29	83	7	79	21	2	2	73	1.09
1201207--1201687	242	2.0	244	83	4	607	46	7	9	36	1.64
1207052--1207103	26	2.0	26	84	3	68	65	7	13	13	1.46
1207937--1207979	18	2.4	18	81	14	54	65	2	0	32	1.06
1208947--1209087	57	2.5	57	72	2	131	24	17	17	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1211053--1211118	20	3.4	19	76	4	69	68	1	7	22	1.24
1211992--1212022	15	2.0	16	93	6	55	80	0	0	19	0.71
1219394--1219443	25	2.0	25	92	0	82	24	24	20	32	1.98
1220809--1220847	19	2.1	19	90	4	62	17	12	0	69	1.19
1223293--1223327	2	17.5	2	100	0	70	0	51	0	48	1.00
1228552--1228662	29	3.8	29	75	9	91	33	15	8	43	1.76
1234013--1234059	24	2.0	24	83	8	60	40	4	10	44	1.59
1235644--1235680	16	2.3	15	90	9	56	40	0	2	56	1.13
1235877--1235911	16	2.2	16	90	10	54	54	0	0	45	0.99
1235906--1235965	25	2.4	26	80	8	79	38	6	0	55	1.27
1238040--1238074	18	1.9	18	88	0	52	28	14	20	37	1.91
1245521--1245848	65	5.1	64	75	6	259	35	13	11	39	1.81
1245491--1245848	129	2.8	129	85	1	448	35	13	12	38	1.82
1248206--1248256	20	2.6	19	78	9	57	25	1	3	68	1.17
1250619--1250685	15	4.3	15	75	15	55	53	0	1	44	1.09
1250640--1250674	17	2.0	18	94	5	63	62	0	0	37	0.95
1250721--1250795	9	8.2	9	78	7	62	77	1	2	18	0.96
1250720--1250791	29	2.5	29	78	17	78	76	1	2	19	0.99
1251082--1251143	3	20.7	3	100	0	124	67	0	0	32	0.91
1251082--1251153	6	11.4	7	96	3	72	66	0	0	33	0.92
1251650--1251680	15	2.0	16	93	6	55	41	12	12	32	1.81
1252030--1252058	9	3.0	10	90	10	51	31	0	0	68	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1252030--1252066	7	5.6	7	90	6	51	32	0	0	67	0.91
1252517--1252542	13	2.0	13	100	0	52	46	7	7	38	1.61
1253189--1253222	11	3.1	11	82	0	50	64	0	0	35	0.94
1253189--1253235	23	2.1	23	92	4	78	63	0	2	34	1.06
1254275--1254318	22	2.0	22	86	0	61	36	6	0	56	1.26
1255987--1256036	15	3.6	14	80	17	52	44	0	2	54	1.11
1256483--1256576	33	2.8	32	85	6	125	35	12	17	35	1.87
1256571--1256649	41	1.9	41	85	10	108	36	16	12	34	1.87
1257881--1258668	160	4.9	160	80	2	742	42	13	10	33	1.79
1257881--1258668	161	4.9	160	80	4	732	42	13	10	33	1.79
1258028--1258668	321	2.0	321	82	3	790	42	14	10	32	1.80
1259820--1259856	13	2.8	13	87	0	56	62	5	8	24	1.44
1262081--1262124	21	2.1	21	82	0	52	38	20	11	29	1.87
1264677--1265364	62	11.2	62	71	12	312	35	12	12	39	1.80
1264795--1265346	125	4.5	127	74	9	416	35	12	11	40	1.79
1264796--1265371	126	4.7	125	73	12	372	35	12	11	40	1.79
1265464--1265767	63	4.8	62	73	7	245	33	14	12	39	1.84
1265464--1265899	128	3.4	125	81	8	443	33	12	13	40	1.81
1265546--1265742	66	3.0	66	72	14	194	31	13	12	42	1.81
1267952--1268012	23	2.7	21	73	19	52	24	4	6	63	1.38
1270334--1270410	22	3.8	21	78	15	81	2	1	14	81	0.86
1270335--1270406	8	9.4	8	74	16	64	2	1	11	84	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1270338--1270402	21	3.4	19	78	17	64	3	1	12	83	0.84
1270351--1270405	21	2.5	22	91	5	85	1	1	10	85	0.75
1270350--1270416	21	2.9	24	78	19	79	2	1	13	82	0.86
1270559--1270731	95	1.8	96	87	6	262	39	9	15	36	1.79
1278446--1278486	19	2.2	19	100	0	82	29	17	19	34	1.94
1285577--1285606	13	2.2	14	94	5	53	0	30	0	70	0.88
1292613--1292639	11	2.5	11	100	0	54	85	14	0	0	0.61
1293339--1293382	3	14.7	3	100	0	88	68	0	0	31	0.90
1294872--1294934	33	1.9	33	93	0	108	28	20	19	31	1.97
1294971--1295147	69	2.6	64	73	7	156	33	20	11	33	1.89
1294964--1295214	135	1.9	135	80	1	297	33	19	13	33	1.90
1294872--1296197	34	39.4	33	69	9	303	33	19	15	32	1.92
1295289--1295527	98	2.4	100	85	2	320	32	20	13	33	1.92
1295617--1295721	32	3.2	32	74	15	90	34	17	17	31	1.93
1295670--1295998	170	1.9	168	81	4	394	33	17	16	31	1.93
1296010--1296197	33	5.6	33	78	7	166	33	18	14	33	1.91
1296011--1296187	67	2.7	66	77	9	173	33	18	15	32	1.92
1296286--1296382	36	2.7	36	81	0	113	14	15	13	56	1.67
1296891--1296927	18	2.1	18	89	0	56	24	21	10	43	1.84
1297049--1297369	37	8.7	36	76	7	268	29	16	19	34	1.94
1297049--1297369	111	2.9	109	76	5	297	29	16	19	34	1.94
1297049--1297369	74	4.3	74	82	3	333	29	16	19	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1302158--1302185	13	2.2	13	100	0	56	28	0	0	71	0.86
1303377--1303612	36	6.8	35	74	7	167	24	18	20	37	1.94
1303352--1303652	141	2.2	138	85	1	395	25	16	20	36	1.94
1303395--1303693	141	2.1	138	82	1	346	26	17	18	37	1.93
1303960--1303985	3	8.7	3	100	0	52	34	0	0	65	0.93
1304968--1304997	3	10.0	3	100	0	60	33	0	0	66	0.92
1304998--1305039	13	3.0	14	82	10	50	80	0	7	11	0.88
1317181--1317213	14	2.4	14	90	5	50	21	0	6	72	1.05
1322605--1322672	27	2.4	28	74	13	68	50	1	1	47	1.19
1322596--1322678	28	2.8	29	74	7	78	45	1	2	50	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77