genome.fa.s179.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  69  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13819622--13819747	63	2.0	63	93	0	216	46	2	33	17	1.61
13821065--13821112	2	24.0	2	86	0	69	43	0	4	52	1.20
13821159--13821223	25	2.7	23	75	15	58	40	0	4	55	1.21
13821427--13821474	25	1.9	25	95	0	87	33	16	8	41	1.78
13821639--13821706	32	2.1	32	86	0	91	47	1	0	51	1.09
13822871--13822934	22	3.0	21	77	11	58	45	1	0	53	1.10
13825248--13825285	20	1.9	20	88	0	58	47	0	0	52	1.00
13825252--13825371	31	4.0	30	72	15	97	44	0	1	54	1.10
13832230--13832425	98	2.0	99	80	3	225	41	8	11	38	1.73
13834570--13834632	27	2.4	27	82	12	78	47	0	1	50	1.10
13835259--13835283	13	1.9	13	100	0	50	64	0	0	36	0.94
13835887--13835918	17	1.9	17	93	6	57	65	0	9	25	1.22
13838138--13838170	16	1.9	18	88	11	52	33	18	0	48	1.48
13838622--13838660	18	2.1	19	86	13	55	48	0	0	51	1.00
13845465--13845540	30	2.5	30	82	4	91	36	21	3	38	1.72
13845588--13845641	29	2.0	26	83	16	67	46	5	14	33	1.68
13850382--13850427	23	2.0	23	83	4	58	34	0	0	65	0.93
13853017--13853182	83	2.0	84	91	2	271	20	15	12	51	1.75
13856791--13856827	14	2.6	14	91	0	65	43	0	2	54	1.14
13858292--13858318	2	13.5	2	100	0	54	48	0	0	51	1.00
13858744--13859064	157	2.0	163	86	4	456	31	14	16	37	1.89
13862948--13863024	29	2.5	31	77	8	79	42	0	7	49	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13865659--13865689	2	15.5	2	100	0	62	48	0	0	51	1.00
13867849--13867924	37	2.1	37	100	0	152	31	15	11	40	1.84
13876180--13876249	27	2.6	27	97	0	131	48	10	8	32	1.67
13883757--13883807	26	2.0	24	88	7	75	66	1	0	31	1.03
13888157--13888327	62	2.7	63	77	6	195	43	10	7	38	1.68
13891906--13891972	33	2.0	33	100	0	134	23	14	22	38	1.92
13892463--13892566	52	1.9	52	86	9	147	36	22	12	28	1.90
13900089--13900122	16	2.1	17	88	5	52	32	8	0	58	1.29
13909462--13909534	21	3.5	21	69	10	60	19	8	19	53	1.69
13909564--13909590	12	2.2	12	100	0	54	22	0	7	70	1.12
13913855--13913883	6	4.8	6	100	0	58	0	0	13	86	0.58
13913841--13913888	18	2.6	19	80	12	55	2	6	14	77	1.06
13929408--13929697	145	2.0	145	99	0	571	20	11	12	55	1.67
13934280--13934320	18	2.3	18	87	8	57	29	12	2	56	1.49
13935332--13935380	26	1.9	26	87	4	73	46	10	10	32	1.71
13945267--13945302	18	2.0	18	100	0	72	38	5	22	33	1.77
13945710--13945738	14	2.1	14	100	0	58	24	20	27	27	1.99
13945782--13945952	89	1.9	89	93	2	299	56	4	3	35	1.37
13946998--13947035	2	19.0	2	100	0	76	50	0	0	50	1.00
13948255--13948287	10	3.3	10	91	0	57	33	0	15	51	1.43
13961320--13961638	161	2.0	161	92	0	530	32	26	12	27	1.93
13969646--13969674	11	2.7	11	94	5	51	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13970099--13970133	18	1.9	18	100	0	70	40	8	5	45	1.58
13970100--13970140	18	2.3	18	91	0	64	46	7	4	41	1.53
13980139--13980181	14	3.1	14	77	9	52	60	0	0	39	0.97
13980849--13980891	18	2.4	17	81	11	50	62	4	0	32	1.15
13981102--13981136	12	3.0	11	91	8	52	40	0	8	51	1.33
13981311--13981355	18	2.4	19	81	7	56	64	0	0	35	0.94
13981311--13981357	19	2.5	20	79	10	62	63	0	0	36	0.94
13981435--13981487	22	2.4	22	78	6	63	49	1	0	49	1.12
13989643--13989839	45	4.4	45	89	3	290	26	23	23	26	2.00
13998562--13998614	3	16.7	3	88	7	70	30	1	0	67	1.01
13998589--13998626	18	2.1	18	90	0	58	28	2	0	68	1.03
14002908--14002963	27	2.1	27	93	6	96	30	19	21	28	1.98
14011603--14011628	7	3.7	7	100	0	52	73	0	0	26	0.84
14011858--14011900	18	2.3	19	80	4	52	44	0	4	51	1.22
14024538--14024563	2	13.0	2	100	0	52	50	0	0	50	1.00
14027867--14027895	2	14.5	2	100	0	58	48	0	0	51	1.00
14037681--14037723	2	21.5	2	100	0	86	0	48	0	51	1.00
14039168--14039198	2	15.5	2	100	0	62	0	51	0	48	1.00
14043822--14043902	26	3.3	26	71	8	71	55	0	0	44	0.99
14045171--14045201	16	1.9	16	93	0	53	64	0	0	35	0.94
14045193--14045225	16	2.1	16	88	11	50	51	0	0	48	1.00
14045162--14045218	23	2.6	23	73	15	66	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14051668--14051693	5	5.2	5	100	0	52	80	0	0	19	0.71
14053335--14053395	29	2.1	30	84	9	81	55	1	1	40	1.19
14064498--14064704	105	2.0	103	93	1	351	35	27	15	22	1.94
14067831--14067958	68	1.9	68	88	3	195	40	21	14	23	1.90
14069475--14069526	20	2.6	21	90	6	81	50	1	0	48	1.12
14078427--14078461	2	17.5	2	100	0	70	48	0	0	51	1.00
14079122--14079276	77	2.0	78	96	1	285	45	21	7	25	1.78
14083772--14084059	143	2.0	144	95	0	515	39	22	13	24	1.89
14093565--14093597	3	11.3	3	93	6	59	30	0	0	69	0.88
14094421--14094460	20	1.9	22	85	10	57	30	15	22	32	1.94
14103126--14103179	26	2.1	26	100	0	108	50	7	16	25	1.71
14104993--14105079	44	2.0	44	100	0	174	39	8	4	48	1.53
14105155--14105209	25	2.3	23	79	14	60	54	1	1	41	1.21
14105184--14105262	14	5.3	15	70	17	56	63	3	0	32	1.12
14105224--14105266	15	3.0	14	83	6	59	65	0	0	34	0.93
14105386--14105425	18	2.2	18	86	0	53	57	2	0	40	1.12
14107083--14107117	15	2.3	15	90	0	52	11	8	60	20	1.57
14111015--14111316	159	1.9	164	93	3	533	49	16	8	26	1.74
14119649--14119702	18	3.0	18	74	20	51	59	3	0	37	1.15
14119894--14119940	24	2.0	24	95	0	85	48	10	12	27	1.74
14120383--14120444	28	2.2	29	85	2	81	33	3	3	59	1.29
14121600--14121692	30	3.2	29	76	11	82	29	2	5	63	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14121729--14121760	15	2.0	17	88	11	50	31	0	6	62	1.20
14122482--14122536	24	2.3	24	90	0	83	50	9	10	29	1.68
14125106--14125185	32	2.5	31	73	13	81	47	0	2	50	1.14
14128799--14128842	19	2.4	19	82	14	56	45	0	2	52	1.13
14128768--14128842	20	3.7	21	70	21	52	45	0	2	52	1.15
14128925--14129068	62	2.3	61	75	17	143	47	2	0	48	1.21
14129275--14129307	16	2.1	16	88	11	50	54	3	0	42	1.15
14129763--14129813	18	2.6	21	78	12	63	39	0	3	56	1.18
14130545--14130925	117	3.4	116	77	11	307	41	8	9	40	1.68
14132911--14132954	20	2.2	20	95	0	79	27	25	11	36	1.90
14132848--14133041	105	1.9	103	87	2	289	25	29	14	29	1.95
14135120--14135150	14	2.1	15	94	5	55	67	0	0	32	0.91
14135559--14135611	20	2.8	19	77	8	63	62	1	5	30	1.29
14137680--14137714	15	2.2	17	90	10	56	28	5	0	65	1.15
14138641--14138776	10	14.0	10	64	11	50	36	1	3	58	1.25
14138645--14138722	28	2.7	27	74	16	68	33	2	5	58	1.33
14138641--14138751	29	3.9	27	74	16	82	33	1	4	60	1.27
14140125--14140161	19	1.9	19	100	0	74	35	21	16	27	1.94
14141195--14141243	25	1.9	26	87	4	73	12	8	2	77	1.07
14141779--14141830	17	3.1	16	76	13	52	63	7	0	28	1.22
14141952--14142016	32	2.0	32	85	5	87	46	1	3	49	1.27
14142805--14142848	15	2.9	16	86	6	65	22	4	0	72	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14145277--14145341	32	2.0	32	82	5	78	44	1	3	50	1.26
14145872--14146029	83	1.9	83	93	1	273	24	33	13	28	1.94
14146546--14146575	4	7.5	4	100	0	60	76	0	0	23	0.78
14146714--14146746	15	2.3	14	94	5	57	24	3	0	72	0.98
14146940--14147100	83	1.9	83	93	2	279	24	32	13	29	1.93
14147512--14147672	83	1.9	83	92	2	270	25	31	13	29	1.93
14146440--14148024	572	2.8	575	94	2	2756	34	15	8	41	1.77
14150595--14150638	19	2.4	19	82	14	56	45	0	2	52	1.13
14150564--14150638	20	3.7	21	70	21	52	45	0	2	52	1.15
14152087--14152128	19	2.2	20	83	12	52	69	4	4	21	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77