genome.fa.s179.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  18  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3269937--3270023	42	2.1	42	91	0	138	39	6	12	41	1.70
3271263--3271287	2	12.5	2	100	0	50	48	0	0	52	1.00
3276485--3276891	133	3.1	130	79	7	424	42	7	11	38	1.69
3277363--3277400	1	38.0	1	100	0	76	100	0	0	0	0.00
3279681--3279705	12	2.1	12	100	0	50	24	0	28	48	1.52
3279923--3279952	16	1.9	16	93	6	53	73	0	13	13	1.10
3280421--3280503	40	2.1	40	86	2	114	46	2	7	43	1.44
3284331--3284380	21	2.3	21	79	6	55	48	16	0	36	1.46
3284300--3284531	119	2.0	116	83	2	293	49	13	0	36	1.49
3284684--3284734	23	2.2	23	89	0	75	68	19	0	11	1.20
3287297--3287522	21	10.8	21	75	8	129	45	5	11	37	1.64
3287321--3287700	21	18.1	21	72	11	219	44	6	11	37	1.67
3287291--3287494	65	3.2	65	88	7	278	45	6	10	37	1.65
3287450--3287603	66	2.4	64	79	13	158	42	7	12	37	1.71
3287616--3287688	19	3.7	20	82	12	89	47	6	9	35	1.63
3287616--3287684	20	3.5	20	88	6	95	49	7	10	33	1.64
3288833--3288959	60	2.1	62	81	12	156	51	15	3	28	1.61
3294306--3294337	3	10.7	3	93	0	55	0	0	62	37	0.95
3295561--3295605	22	2.0	24	86	8	67	40	0	0	60	0.97
3296095--3296397	153	2.0	152	96	0	552	34	20	10	33	1.88
3297401--3297434	13	2.6	13	90	0	50	88	5	2	2	0.70
3299535--3300250	366	2.0	366	87	3	1039	32	16	17	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3302961--3303427	245	1.9	245	94	0	819	37	11	13	37	1.82
3310618--3310653	18	1.9	19	94	5	65	16	8	5	69	1.33
3310742--3310786	16	2.8	16	86	3	54	17	6	15	60	1.56
3311379--3311423	22	2.0	22	86	0	63	51	20	13	15	1.76
3313176--3313320	52	2.8	52	85	2	184	29	25	6	38	1.80
3313356--3313398	11	3.9	11	81	0	59	51	23	0	25	1.49
3313355--3313399	22	2.0	22	91	0	72	48	22	0	28	1.50
3314268--3314421	52	3.0	52	78	3	168	27	21	9	41	1.84
3314269--3314422	51	3.0	50	76	8	148	26	22	9	41	1.84
3314446--3314488	11	3.9	11	87	0	68	51	25	0	23	1.49
3314445--3314489	22	2.0	22	95	0	81	48	24	0	26	1.51
3321694--3322037	178	1.9	176	88	3	521	40	18	8	32	1.80
3326969--3327072	16	6.1	16	69	16	66	51	2	0	44	1.22
3327100--3327147	13	3.6	13	83	13	62	41	0	2	56	1.11
3327120--3327169	18	2.9	18	85	5	68	40	0	4	56	1.18
3327088--3327251	44	3.9	41	71	18	142	38	1	3	56	1.25
3327222--3327272	18	3.1	17	84	15	63	39	0	5	54	1.24
3327117--3327295	18	9.9	17	67	24	50	39	1	3	55	1.25
3327096--3327295	15	14.9	13	66	20	76	39	1	3	56	1.23
3331845--3331875	14	2.3	14	94	5	55	83	0	3	12	0.75
3332011--3332043	17	2.0	17	88	5	50	39	0	3	57	1.14
3336080--3336135	22	2.7	20	78	16	60	12	8	1	76	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3336703--3336755	27	1.9	28	88	3	81	54	1	0	43	1.11
3342155--3342191	16	2.3	17	86	9	51	75	10	5	8	1.17
3344775--3344835	22	2.8	22	79	0	59	26	3	3	67	1.22
3345051--3345095	13	3.5	13	81	6	56	15	13	28	42	1.85
3345877--3345920	3	14.7	3	95	0	79	68	29	0	2	1.02
3349209--3349254	18	2.8	17	75	12	51	15	6	8	69	1.34
3352715--3352791	26	3.0	26	80	3	84	27	19	25	27	1.99
3352577--3352769	104	1.9	104	85	2	271	25	17	25	31	1.97
3352621--3352798	78	2.3	78	78	5	207	26	18	24	30	1.98
3353134--3353200	7	8.6	8	82	14	70	68	7	0	23	1.15
3353149--3353201	8	6.8	8	87	10	65	73	5	0	20	1.03
3353741--3353795	20	2.7	20	80	8	58	38	25	16	20	1.92
3355167--3355214	23	2.1	23	84	7	62	33	14	16	35	1.89
3356501--3356532	3	10.7	3	93	0	55	65	0	3	31	1.08
3359814--3360034	116	1.9	115	80	6	259	23	27	14	35	1.93
3364499--3364573	3	25.3	3	84	8	82	29	5	0	65	1.15
3365277--3365333	11	4.8	12	77	14	57	15	7	1	75	1.10
3365296--3365373	17	4.5	17	74	11	52	17	1	2	78	0.94
3365313--3365364	27	1.9	27	92	0	86	17	1	1	78	0.93
3365324--3365374	19	2.9	18	83	11	61	21	0	1	76	0.88
3365427--3365467	11	3.7	11	83	0	55	85	9	0	4	0.73
3365419--3365467	22	2.2	23	85	10	66	83	8	2	6	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3365428--3365468	18	2.3	18	91	8	66	85	7	0	7	0.75
3365447--3365556	38	2.8	37	83	14	141	62	7	2	27	1.35
3370711--3370999	86	3.4	85	81	4	323	33	15	13	37	1.87
3371199--3371985	118	6.7	118	72	10	295	21	23	11	42	1.86
3371583--3372170	119	4.9	118	76	7	379	21	22	11	43	1.84
3371552--3372244	239	2.9	236	77	4	640	21	22	11	43	1.85
3373180--3373224	3	15.0	3	100	0	90	33	0	0	66	0.92
3373180--3373262	18	4.5	17	77	12	58	27	7	1	63	1.28
3374125--3374173	19	2.5	20	83	3	64	18	4	2	75	1.06
3374165--3374214	20	2.5	20	87	6	75	30	8	0	62	1.24
3374170--3374213	19	2.3	19	88	11	72	31	9	0	59	1.29
3374249--3374330	36	2.3	35	81	8	103	65	6	3	24	1.31
3377020--3377112	47	2.0	47	100	0	186	32	15	8	44	1.76
3377474--3377558	20	4.2	20	76	5	73	24	11	14	49	1.76
3377539--3377572	16	2.2	15	89	5	50	29	5	11	52	1.61
3377593--3377668	20	3.8	20	84	3	89	31	10	5	52	1.58
3377576--3377667	20	4.4	21	82	6	82	28	9	7	54	1.60
3377648--3377691	17	2.7	16	82	3	52	36	2	9	52	1.46
3378580--3378664	31	2.8	30	85	8	111	34	14	24	27	1.94
3380830--3380865	4	8.8	4	90	3	54	22	0	2	75	0.94
3381527--3381561	17	2.1	17	88	0	52	80	2	0	17	0.84
3382848--3382904	16	3.5	17	80	7	73	17	7	0	75	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3382979--3383041	26	2.3	28	79	17	71	28	3	9	58	1.45
3384479--3384885	143	2.8	143	79	6	406	40	13	12	33	1.83
3385117--3385453	185	1.8	187	80	7	418	40	14	11	33	1.82
3391464--3391500	12	3.0	13	80	15	51	29	0	0	70	0.88
3392713--3392780	29	2.3	30	87	10	95	33	8	0	57	1.30
3392816--3392876	10	5.5	11	75	14	54	47	1	1	49	1.21
3392782--3392867	35	2.4	36	82	7	95	44	2	1	52	1.21
3392912--3393142	29	7.9	29	69	14	127	48	3	2	45	1.31
3393148--3393235	29	3.1	27	78	13	81	50	3	2	44	1.31
3393174--3393277	39	2.6	40	78	11	99	51	3	0	43	1.26
3393069--3393334	18	13.6	20	63	20	66	49	3	3	44	1.34
3393503--3393556	16	3.6	15	78	12	58	50	0	1	48	1.11
3393611--3393665	21	2.6	21	79	0	56	50	7	7	34	1.58
3393693--3393718	10	2.6	10	100	0	52	38	0	0	61	0.96
3394360--3394411	23	2.2	24	83	13	63	57	7	0	34	1.27
3394360--3394424	23	2.9	22	80	15	62	58	6	1	33	1.32
3394735--3394783	18	2.7	18	90	9	73	69	4	0	26	1.06
3395621--3395779	81	2.0	81	87	0	228	58	8	4	28	1.47
3401112--3401171	4	15.0	4	87	0	75	43	1	1	53	1.20
3401112--3401171	18	3.3	18	88	0	84	43	1	1	53	1.20
3403050--3403093	3	14.7	3	81	9	54	34	34	0	31	1.58
3403428--3403458	2	15.5	2	100	0	62	51	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3405471--3405557	30	2.9	29	77	17	90	47	0	1	51	1.08
3406391--3406422	15	2.0	17	88	11	50	53	0	0	46	1.00
3406353--3406413	29	2.2	28	82	8	72	52	3	0	44	1.17
3420390--3420427	18	2.1	18	100	0	76	34	5	34	26	1.79
3429660--3429693	2	17.0	2	87	0	50	0	50	2	47	1.16
3432912--3433614	364	1.9	363	80	5	821	43	7	30	18	1.78
3437402--3437464	32	2.0	32	100	0	126	33	12	15	38	1.86
3439188--3439544	178	2.0	178	90	4	560	30	12	21	35	1.90
3442651--3442675	2	12.5	2	100	0	50	52	0	0	48	1.00
3456866--3456953	18	5.1	18	75	18	62	35	28	4	31	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77