genome.fa.s179.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  15  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2492411--2492518	43	2.5	42	76	5	108	72	4	2	20	1.16
2493592--2493638	21	2.3	21	82	10	53	70	0	4	25	1.05
2493961--2494033	30	2.4	31	79	6	78	45	28	0	26	1.54
2494072--2494106	12	2.8	12	86	4	52	37	37	0	25	1.57
2496983--2497045	27	2.4	25	82	10	72	31	15	0	52	1.44
2505833--2505874	8	5.2	8	80	8	50	66	2	2	28	1.16
2505831--2505885	23	2.3	23	81	9	67	61	1	1	34	1.17
2508899--2509619	158	4.6	158	81	2	718	39	19	6	33	1.78
2509005--2509591	314	1.9	314	82	1	746	39	19	6	35	1.77
2508915--2509626	315	2.3	314	81	1	791	40	19	6	33	1.78
2509880--2510043	33	4.9	34	85	7	187	40	11	7	39	1.71
2509904--2510043	66	2.1	67	93	1	237	42	11	7	38	1.70
2509904--2510043	33	4.2	33	86	0	199	42	11	7	38	1.70
2510350--2510394	23	1.9	24	86	4	65	35	15	13	35	1.87
2511061--2511121	31	2.0	31	87	6	88	40	6	3	49	1.45
2511038--2511135	16	6.2	16	73	2	63	39	5	5	50	1.47
2514051--2514093	12	3.4	12	77	22	52	6	11	0	81	0.87
2514051--2514093	14	3.3	13	77	9	52	6	11	0	81	0.87
2514994--2515052	19	3.1	19	82	4	66	54	6	1	37	1.37
2515784--2515843	19	3.3	19	76	21	65	35	3	0	61	1.12
2517775--2517842	35	1.9	35	88	5	102	36	5	8	48	1.59
2519924--2519970	18	2.7	18	93	3	78	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2525322--2525369	25	1.9	25	86	0	69	43	0	2	54	1.12
2531177--2531203	3	9.0	3	100	0	54	66	0	0	33	0.92
2532541--2532790	138	1.8	136	85	5	351	41	12	16	30	1.85
2533179--2533247	29	2.3	31	85	5	97	46	0	1	52	1.09
2533883--2533951	29	2.4	29	83	4	79	55	4	0	40	1.20
2540783--2540825	20	2.1	21	87	8	63	30	0	0	69	0.88
2542112--2542198	43	2.0	42	80	8	95	50	2	2	44	1.27
2556442--2556483	7	6.0	7	83	10	59	26	0	0	73	0.83
2556440--2556482	21	2.0	21	91	8	70	23	0	0	76	0.78
2557640--2557664	12	2.1	12	100	0	50	48	0	16	36	1.46
2559284--2559374	44	2.0	45	89	2	139	25	21	5	47	1.72
2566749--2566796	13	3.6	13	82	2	60	62	0	0	37	0.95
2567411--2567459	25	1.9	25	87	4	71	32	0	4	63	1.13
2567775--2567828	21	2.6	21	91	5	83	40	1	0	57	1.09
2567775--2567837	21	3.0	20	82	13	65	38	3	1	57	1.24
2570356--2570414	28	2.1	28	81	6	66	18	11	25	44	1.84
2570531--2570569	19	2.1	19	95	0	69	41	10	12	35	1.77
2570594--2570630	3	12.3	3	100	0	74	35	0	0	64	0.94
2574514--2574551	19	2.0	19	85	10	51	34	0	0	65	0.93
2574581--2574629	18	2.7	18	79	17	57	63	0	0	36	0.95
2574581--2574636	25	2.1	26	84	15	71	62	0	0	37	0.95
2586884--2586934	15	3.2	16	79	17	61	56	5	3	33	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2586884--2586934	16	3.2	15	78	13	50	56	5	3	33	1.42
2587543--2587629	34	2.6	34	80	8	97	43	12	3	40	1.60
2587742--2587812	29	2.4	29	81	6	81	38	9	1	50	1.44
2593166--2593226	30	2.0	30	93	0	104	42	18	16	22	1.89
2594775--2595017	34	7.2	34	67	10	95	36	10	11	41	1.76
2601954--2602012	20	2.8	21	77	10	59	16	3	0	79	0.86
2601949--2602010	31	2.1	28	85	8	79	16	6	0	77	0.97
2601957--2602010	28	1.9	28	85	14	76	18	3	0	77	0.91
2602169--2602221	11	5.0	10	79	9	52	60	0	3	35	1.15
2602072--2602198	49	2.6	48	82	5	155	53	5	5	35	1.47
2602261--2602287	14	1.9	14	100	0	54	59	3	0	37	1.15
2602693--2602728	14	2.6	14	90	0	63	55	8	16	19	1.66
2613975--2614022	26	2.0	25	84	12	64	39	0	2	58	1.10
2614097--2614178	34	2.4	33	78	9	85	39	10	6	43	1.65
2614124--2614202	34	2.3	34	78	8	81	41	8	5	44	1.57
2614320--2614390	29	2.4	29	81	6	81	38	9	1	50	1.44
2615424--2615451	1	28.0	1	100	0	56	0	0	0	100	0.00
2619746--2619806	30	2.0	30	93	0	104	42	18	16	22	1.89
2621458--2621534	34	2.3	34	93	0	136	36	12	12	37	1.83
2628521--2628581	21	2.8	22	73	12	54	14	3	1	80	0.92
2628525--2628580	30	1.9	28	82	7	67	16	3	1	78	0.97
2628640--2628721	26	3.3	25	72	19	82	59	1	8	30	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2628640--2628814	49	3.6	50	84	3	214	54	5	5	34	1.46
2629311--2629339	14	2.1	14	100	0	58	51	6	20	20	1.70
2638144--2639285	575	2.0	574	95	0	2034	36	15	11	35	1.84
2654906--2654966	15	3.9	16	79	14	74	37	4	4	52	1.45
2654903--2654970	16	4.4	16	77	7	77	39	4	4	51	1.42
2658638--2658696	29	2.0	29	87	6	84	67	1	25	5	1.20
2658628--2658696	29	2.3	30	80	14	79	66	2	26	4	1.24
2660893--2660936	14	3.1	14	84	9	54	11	6	9	72	1.27
2660990--2661019	16	1.9	16	93	6	53	26	0	10	63	1.26
2664582--2664644	31	2.0	32	90	3	101	15	17	12	53	1.72
2664832--2664958	68	1.9	68	87	9	188	35	6	17	40	1.75
2665122--2665151	15	2.0	15	93	0	51	16	0	16	66	1.25
2665284--2665330	24	2.0	24	83	8	60	55	0	2	42	1.12
2665495--2665604	49	2.2	49	81	0	130	50	8	13	28	1.70
2665544--2665709	56	3.1	56	70	15	168	43	9	16	29	1.80
2665472--2665739	105	2.6	105	82	1	333	45	10	14	28	1.78
2665935--2665974	20	2.0	21	90	5	64	30	2	12	55	1.50
2668176--2668216	11	3.6	11	80	6	55	70	9	0	19	1.14
2668177--2668216	12	3.4	12	82	3	55	72	10	0	17	1.11
2668811--2668841	3	10.3	3	100	0	62	67	0	0	32	0.91
2677402--2677468	35	1.9	34	82	11	82	56	1	1	40	1.17
2679104--2679142	20	2.0	20	85	5	53	74	2	0	23	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2681422--2681492	29	2.4	29	83	2	79	45	12	1	40	1.51
2693167--2693215	25	2.0	25	83	0	62	65	0	2	32	1.04
2698354--2698394	22	1.9	22	95	5	75	58	4	0	36	1.20
2698582--2698646	34	1.9	34	84	6	87	56	1	1	40	1.18
2699380--2699463	33	2.5	33	81	7	91	30	3	15	50	1.61
2702576--2702646	29	2.4	29	83	2	79	45	9	1	43	1.46
2706930--2706954	1	25.0	1	100	0	50	0	0	0	100	0.00
2711804--2711861	27	2.1	27	96	0	107	18	51	6	22	1.70
2716575--2716618	22	2.0	22	95	0	79	31	11	13	43	1.80
2716766--2716830	25	2.7	24	88	6	96	15	30	18	35	1.92
2720470--2720513	22	2.0	22	95	0	79	31	11	13	43	1.80
2723672--2723707	19	1.9	18	88	5	54	16	8	8	66	1.42
2724927--2725134	103	2.0	103	97	0	389	25	20	13	39	1.89
2725232--2725313	40	2.0	40	95	0	146	42	12	12	32	1.79
2727451--2727487	3	12.3	3	100	0	74	67	0	0	32	0.91
2739554--2739601	25	2.0	25	95	4	89	31	8	14	45	1.74
2742603--2742675	32	2.3	32	95	2	130	43	13	10	31	1.79
2743432--2743473	12	3.6	12	96	3	77	50	19	7	23	1.72
2747929--2748027	50	2.0	50	88	4	146	25	13	7	54	1.63
2753160--2753290	64	2.0	64	97	0	244	44	17	12	25	1.84
2755351--2755428	39	2.0	39	90	9	124	33	23	10	33	1.88
2757263--2757316	20	2.5	23	82	17	71	38	3	0	57	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2757263--2757313	19	2.5	20	81	15	59	37	3	0	58	1.16
2758818--2758846	14	2.0	15	93	6	51	62	0	3	34	1.12
2760232--2760279	22	2.2	22	96	3	89	47	0	0	52	1.00
2761008--2761042	6	5.8	6	100	0	70	14	0	0	85	0.59
2762931--2762973	16	2.7	16	88	0	59	48	9	2	39	1.48
2762931--2762982	16	3.2	17	81	10	56	48	9	3	38	1.54
2762927--2762995	32	2.2	30	80	12	77	49	7	4	39	1.50
2765154--2765191	2	19.5	2	89	5	60	47	2	0	50	1.15
2771843--2771877	17	2.1	17	88	0	52	42	8	0	48	1.33
2773333--2773366	2	17.5	2	87	6	52	55	0	0	44	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77