genome.fa.s179.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  51  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10057410--10057483	23	3.3	23	84	3	96	22	24	21	31	1.99
10057307--10057563	132	1.9	132	87	3	374	23	23	18	35	1.96
10057552--10057634	22	3.8	22	71	9	80	28	24	15	31	1.96
10057701--10057787	22	4.0	22	76	8	97	24	25	20	29	1.99
10057694--10057776	43	1.9	43	95	0	148	24	25	20	30	1.99
10057433--10057841	153	2.7	151	85	3	541	22	22	18	35	1.95
10058344--10058375	12	2.6	13	80	19	50	46	46	0	6	1.27
10067901--10067930	12	2.5	12	94	0	51	16	26	3	53	1.59
10071612--10071668	25	2.3	25	76	8	62	14	7	8	70	1.33
10076057--10076118	27	2.3	27	83	8	74	48	4	8	38	1.54
10077180--10077218	6	6.7	6	94	2	62	53	0	35	10	1.35
10089908--10089937	2	15.0	2	100	0	60	50	0	0	50	1.00
10091715--10091773	31	1.9	31	89	0	91	38	10	3	47	1.54
10093460--10093517	29	2.0	29	83	9	75	43	1	0	55	1.10
10097707--10098051	175	2.0	175	86	3	480	46	11	19	22	1.82
10098279--10098779	108	4.6	109	85	4	618	47	13	18	20	1.83
10098279--10098779	219	2.3	214	84	5	605	47	13	18	20	1.83
10101242--10101305	27	2.4	26	82	12	76	60	0	0	39	0.97
10102339--10102378	17	2.4	17	86	0	53	25	2	2	70	1.13
10109136--10109197	1	62.0	1	75	0	52	87	6	1	4	0.74
10109134--10109197	18	3.7	18	82	12	80	85	6	1	6	0.78
10109136--10109197	12	5.1	12	76	9	63	87	6	1	4	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10109136--10109197	16	3.8	16	80	15	74	87	6	1	4	0.74
10110875--10110918	22	2.0	22	90	0	70	22	22	25	29	1.99
10110879--10111237	109	3.3	109	87	0	504	23	20	18	37	1.94
10111250--10111304	23	2.4	23	90	3	85	25	29	21	23	1.99
10111212--10111304	22	4.2	22	76	15	93	25	26	19	27	1.99
10111202--10111318	22	5.3	22	76	13	89	26	23	18	31	1.97
10111099--10111468	175	2.1	174	85	3	494	25	22	17	34	1.96
10111376--10111467	43	2.1	45	87	4	134	30	22	16	30	1.96
10111387--10111469	22	3.8	22	76	9	89	27	24	16	31	1.97
10111536--10111579	22	2.0	22	90	0	70	27	27	18	27	1.98
10111419--10111633	110	2.0	110	89	0	331	21	22	19	36	1.95
10112134--10112165	12	2.6	13	80	19	50	46	46	0	6	1.27
10117968--10118006	20	2.0	20	89	0	60	5	17	7	69	1.32
10125853--10125913	21	3.0	20	80	4	59	6	3	6	83	0.89
10125852--10125906	18	3.0	18	78	2	65	7	3	7	81	0.96
10125852--10125927	35	2.1	37	88	9	113	9	3	7	78	1.06
10125872--10125940	35	2.0	33	83	10	86	11	1	7	79	0.98
10128632--10128664	2	16.5	2	93	0	57	48	3	0	48	1.17
10131054--10131088	12	2.9	12	91	0	52	60	0	31	8	1.27
10132296--10132362	33	2.0	33	97	0	125	31	22	8	37	1.85
10141250--10141308	31	1.9	31	85	0	82	37	11	3	47	1.57
10143305--10143350	19	2.5	17	80	16	56	15	4	4	76	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10144387--10144432	16	3.1	15	81	9	51	71	0	15	13	1.14
10144399--10144432	8	4.4	8	92	3	52	73	0	14	11	1.10
10149506--10149564	31	1.9	31	85	0	82	37	11	3	47	1.57
10150889--10150913	5	5.0	5	100	0	50	40	0	0	60	0.97
10151240--10151302	29	2.2	28	78	10	67	44	1	1	52	1.20
10151257--10151314	29	2.0	29	83	9	75	43	1	0	55	1.10
10153919--10153943	8	3.1	8	100	0	50	76	12	12	0	1.04
10156004--10156033	15	2.0	15	100	0	60	46	0	0	53	1.00
10163814--10163848	17	2.0	18	88	5	54	37	5	5	51	1.50
10164960--10164998	3	13.0	3	100	0	78	0	33	0	66	0.92
10175107--10175144	2	19.0	2	94	0	67	47	0	0	52	1.00
10176233--10176268	19	1.9	19	88	5	56	36	0	0	63	0.94
10177240--10177274	14	2.5	14	80	0	52	20	0	5	74	1.02
10177518--10177580	17	3.9	17	79	10	69	79	0	20	0	0.73
10177521--10177583	11	5.2	12	81	12	67	80	0	19	0	0.70
10177528--10177583	10	5.4	10	77	14	60	83	0	16	0	0.64
10178105--10178197	46	2.0	46	100	0	186	33	4	21	40	1.73
10178587--10178634	3	16.0	3	100	0	96	33	0	0	66	0.92
10180357--10180390	15	2.3	15	89	0	50	23	0	2	73	0.97
10181761--10181811	22	2.3	23	89	3	77	5	3	5	84	0.87
10182064--10182096	13	2.6	13	90	4	50	51	0	24	24	1.48
10192378--10192458	26	3.1	26	78	7	110	37	2	0	60	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10200555--10200596	2	20.5	2	85	4	57	50	7	0	42	1.30
10203750--10203811	32	1.9	32	83	0	79	59	9	9	20	1.57
10204737--10204896	45	3.6	45	83	2	198	47	14	11	26	1.78
10204663--10204897	90	2.6	89	80	7	255	47	15	10	27	1.77
10204663--10204897	45	5.2	45	78	5	192	47	15	10	27	1.77
10207350--10207581	16	15.4	15	67	17	56	21	0	30	47	1.57
10207413--10207460	14	3.3	14	77	11	51	20	2	25	52	1.58
10207351--10207486	30	4.7	29	74	13	102	22	0	28	48	1.56
10207516--10207619	16	6.4	16	75	6	93	20	1	29	48	1.60
10209823--10209953	21	6.1	21	86	1	163	43	18	5	32	1.72
10210204--10210249	20	2.3	20	92	3	76	45	15	13	26	1.82
10210362--10210395	17	1.9	18	88	5	52	82	11	5	0	0.83
10211935--10211999	22	3.0	21	78	10	69	60	0	3	36	1.13
10213110--10213694	292	2.0	292	92	1	967	36	17	11	34	1.85
10217098--10217224	35	3.5	35	83	5	148	37	14	9	38	1.78
10217601--10217747	42	3.5	42	81	3	161	22	14	23	38	1.92
10217818--10217971	42	3.7	42	86	1	175	23	14	22	39	1.91
10217601--10218016	224	1.9	225	87	1	611	24	12	20	41	1.88
10217811--10218008	84	2.3	83	74	3	182	26	13	20	39	1.89
10217970--10218153	99	1.9	99	90	0	296	27	14	17	40	1.89
10217944--10218169	99	2.3	99	85	0	281	25	14	19	40	1.90
10218139--10218245	54	2.0	54	80	7	119	26	12	16	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10218089--10218432	153	2.3	149	83	4	451	23	13	20	42	1.87
10218571--10218615	21	2.2	20	88	4	63	44	0	0	55	0.99
10218562--10218615	24	2.5	22	88	11	76	48	0	0	51	1.00
10218588--10218644	30	1.9	30	85	0	78	52	1	0	45	1.11
10219041--10219168	49	2.6	48	81	6	141	31	11	16	40	1.84
10220826--10220866	18	2.2	18	86	4	55	65	0	2	31	1.05
10221752--10221921	79	2.2	79	83	0	205	31	21	8	38	1.84
10222541--10222591	7	7.1	7	86	4	66	11	11	0	76	1.02
10222553--10222610	22	2.6	22	86	8	82	10	10	1	77	1.06
10222536--10222627	29	2.9	29	83	13	103	10	14	1	73	1.14
10222546--10222625	29	2.5	33	86	9	105	11	13	1	73	1.15
10223104--10223143	16	2.5	16	91	0	62	22	10	27	40	1.86
10223852--10224427	196	2.9	195	86	3	753	30	13	20	35	1.91
10227380--10227417	20	1.9	20	88	0	58	23	2	2	71	1.12
10230027--10230059	14	2.4	14	100	0	66	33	0	0	66	0.92
10232114--10232138	13	1.9	13	100	0	50	84	0	0	16	0.63
10236325--10236383	22	2.7	21	86	5	73	76	0	18	5	0.97
10236348--10236392	8	5.8	8	82	12	58	77	0	13	8	0.98
10236334--10236383	22	2.3	22	89	3	75	74	0	20	6	1.03
10236342--10236393	22	2.4	22	87	12	81	76	0	15	7	0.99
10237096--10237379	63	4.5	63	81	2	275	36	8	24	30	1.86
10237097--10237372	126	2.2	126	81	3	306	35	8	25	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10237702--10237911	46	4.6	46	85	3	289	38	10	14	36	1.80
10237880--10237947	31	2.2	31	84	5	84	39	8	14	36	1.78
10238421--10238876	83	5.5	83	82	5	383	23	13	17	45	1.83
10238502--10238860	168	2.2	166	81	7	413	22	13	16	46	1.83
10238413--10238874	40	11.1	40	74	9	288	23	13	17	45	1.85
10238502--10238887	43	9.2	43	74	12	261	22	12	17	46	1.82
10242053--10242079	11	2.5	11	100	0	54	0	7	0	92	0.38
10242130--10243419	48	26.5	51	77	8	351	36	21	14	27	1.92
10242168--10243432	97	13.0	98	83	4	1391	36	21	14	27	1.92
10242168--10243429	243	5.2	240	82	5	1337	36	21	14	27	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77