genome.fa.s179.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  68  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13629078--13629231	41	3.7	41	79	6	157	40	16	12	30	1.86
13629060--13629231	43	4.0	42	79	5	166	41	14	13	29	1.85
13633760--13634188	218	2.0	218	97	0	804	24	24	10	40	1.87
13639047--13639091	19	2.4	19	96	0	81	20	15	15	48	1.80
13641819--13641867	19	2.6	19	83	0	62	44	4	10	40	1.57
13644107--13644177	31	2.4	28	76	19	81	56	0	2	40	1.14
13645445--13645486	7	6.1	7	86	5	59	33	0	0	66	0.92
13646288--13646786	269	1.8	269	90	1	802	42	4	7	45	1.50
13647321--13647419	30	3.3	30	84	0	135	34	14	19	32	1.91
13648320--13648821	270	1.9	271	88	5	766	41	3	8	46	1.51
13648878--13648923	24	1.9	24	86	8	67	32	21	6	39	1.79
13649359--13649453	30	3.2	30	87	0	145	32	11	22	33	1.90
13651074--13651177	53	2.0	53	92	0	172	17	14	8	59	1.59
13656397--13656532	58	2.3	58	91	2	211	40	4	15	39	1.67
13660553--13660626	7	9.6	8	76	17	61	78	0	13	8	0.96
13660560--13660611	9	5.4	9	78	13	50	82	0	11	5	0.82
13660567--13660627	21	2.7	21	90	10	86	80	0	13	6	0.90
13660553--13660604	11	4.2	12	78	16	54	80	0	11	7	0.89
13661174--13661199	13	2.0	13	100	0	52	76	7	0	15	0.99
13661236--13661404	62	2.8	59	82	11	200	34	13	6	44	1.70
13661421--13661615	60	3.2	60	83	11	254	32	10	6	50	1.63
13661633--13661704	5	14.4	5	78	16	62	77	0	5	16	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13661618--13661688	22	3.3	21	74	16	56	76	0	7	16	1.00
13661662--13661705	6	7.5	6	80	14	56	81	0	2	15	0.78
13661633--13661705	29	2.5	29	84	6	85	78	0	5	16	0.94
13661657--13661705	17	2.8	18	88	11	68	81	0	2	16	0.78
13661634--13661704	22	3.3	22	77	13	76	77	0	5	16	0.95
13661728--13661775	25	1.9	25	87	8	71	79	4	2	14	0.98
13662738--13662767	14	2.1	14	93	0	51	66	0	0	33	0.92
13662739--13662870	8	18.3	7	70	22	55	64	3	1	31	1.18
13662736--13662879	53	2.7	55	71	14	129	63	3	1	31	1.19
13663053--13663162	1	110.0	1	74	0	94	2	0	10	87	0.65
13663053--13663162	8	13.4	8	88	6	141	2	0	10	87	0.65
13663170--13663334	41	4.0	41	87	7	217	38	22	16	22	1.93
13664584--13664616	9	3.6	9	92	8	57	0	12	0	87	0.53
13664575--13664616	19	2.2	19	86	0	57	0	16	0	83	0.65
13664585--13664616	10	3.3	10	91	8	57	0	9	0	90	0.45
13668394--13668419	13	2.0	13	100	0	52	76	7	0	15	0.99
13668438--13668801	130	3.0	118	81	13	425	32	12	7	47	1.69
13668573--13668821	59	4.2	58	82	10	290	32	11	7	48	1.67
13668570--13668801	115	2.0	120	85	10	318	33	12	6	47	1.67
13668839--13668925	30	2.8	30	78	13	88	74	2	5	17	1.11
13668867--13668911	6	7.5	6	80	9	56	82	2	2	13	0.86
13668828--13668916	30	2.8	30	80	11	90	74	2	7	15	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13668934--13668983	26	1.9	26	88	8	75	80	4	2	14	0.95
13669921--13670063	53	2.7	52	74	16	125	63	3	1	31	1.20
13669992--13670054	4	16.8	4	80	6	53	68	1	1	28	1.08
13671715--13672142	41	10.1	41	84	6	383	24	14	21	39	1.90
13671715--13672142	83	5.1	83	82	7	366	24	14	21	39	1.90
13672402--13672490	6	14.0	6	75	8	70	22	3	2	71	1.11
13672427--13672599	4	43.5	4	65	18	51	21	4	1	71	1.13
13672422--13672514	36	2.5	36	81	10	98	22	4	1	72	1.09
13672402--13672516	51	2.2	51	83	4	142	21	4	1	72	1.12
13672454--13672561	43	2.5	43	85	10	132	19	5	0	74	1.07
13672509--13672549	18	2.3	18	91	4	66	19	7	0	73	1.07
13672423--13672549	17	7.8	17	66	23	69	22	5	0	71	1.11
13672495--13672559	9	6.9	9	75	8	58	16	4	1	76	1.02
13672568--13672605	17	2.2	18	85	4	51	23	2	5	68	1.23
13672896--13672964	31	2.2	31	84	2	84	23	13	17	46	1.83
13673394--13673508	17	6.5	17	70	19	51	21	1	2	73	1.04
13673455--13673503	5	10.8	5	75	20	54	16	2	0	81	0.78
13673455--13673503	8	5.4	10	76	18	54	16	2	0	81	0.78
13673446--13673501	25	2.2	24	84	12	69	19	1	0	78	0.84
13673526--13673790	58	4.6	58	82	7	331	42	7	13	36	1.72
13674914--13674963	21	2.4	21	93	0	82	26	26	16	32	1.96
13679286--13679318	12	2.7	13	86	13	52	21	0	0	78	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13685250--13685277	2	14.0	2	100	0	56	50	0	0	50	1.00
13688939--13688969	2	15.5	2	100	0	62	48	0	0	51	1.00
13692271--13692325	27	2.0	27	92	0	92	34	10	18	36	1.86
13693021--13693059	3	12.7	3	84	15	53	33	0	0	66	0.92
13693021--13693059	10	4.2	9	84	15	53	33	0	0	66	0.92
13693461--13693513	26	2.0	26	85	7	72	41	5	16	35	1.73
13693959--13694112	12	13.2	11	66	23	50	18	3	3	74	1.12
13693967--13694033	25	2.7	25	81	4	73	22	0	5	71	1.07
13694038--13694112	17	4.5	17	75	8	57	16	6	1	76	1.07
13694138--13694545	58	6.8	59	83	9	472	44	7	12	35	1.70
13694130--13694545	180	2.3	176	83	9	506	45	7	12	35	1.70
13704092--13704156	32	1.9	32	84	9	85	44	3	3	49	1.33
13704072--13704139	28	2.4	29	82	2	84	44	2	2	50	1.32
13728731--13728761	16	2.0	15	93	6	53	38	9	12	38	1.77
13730260--13730481	122	1.8	122	88	1	340	37	7	6	49	1.56
13730556--13730593	18	2.1	19	85	5	51	39	0	2	57	1.12
13730628--13730702	24	3.1	24	75	7	73	26	2	0	70	1.00
13730759--13730789	16	1.9	16	93	0	53	80	0	9	9	0.90
13730874--13730917	11	4.1	11	85	5	63	11	20	38	29	1.87
13730873--13730915	21	2.0	21	95	0	77	11	18	39	30	1.86
13731514--13731629	40	2.9	40	75	10	110	34	15	22	27	1.94
13733113--13733147	2	17.5	2	93	0	61	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13739281--13739346	32	2.0	33	85	5	89	50	1	1	46	1.20
13739287--13739361	27	3.0	26	75	11	68	53	1	1	44	1.17
13745653--13745694	17	2.4	18	88	4	59	19	9	0	71	1.13
13746666--13746699	14	2.4	14	90	0	50	73	0	2	23	0.97
13747806--13748044	119	2.0	119	98	0	460	36	8	14	40	1.77
13748240--13748266	3	9.0	3	100	0	54	33	0	0	66	0.92
13751709--13751733	3	8.3	3	100	0	50	64	0	0	36	0.94
13751730--13751756	4	6.8	4	100	0	54	51	0	0	48	1.00
13752920--13752955	4	8.8	4	90	3	54	22	2	0	75	0.94
13752903--13752955	25	2.2	24	83	10	63	20	3	0	75	0.96
13753045--13753070	12	2.2	12	100	0	52	61	7	0	30	1.24
13758131--13758393	145	1.8	144	84	8	365	30	13	14	41	1.84
13758131--13758429	145	2.1	145	82	6	358	30	12	13	43	1.81
13759742--13759781	3	13.3	3	100	0	80	32	0	0	67	0.91
13759845--13759880	3	12.0	3	87	0	54	61	0	2	36	1.11
13763713--13764061	185	1.9	184	82	7	438	36	15	12	36	1.84
13764073--13764640	296	1.9	299	86	3	824	36	15	13	35	1.86
13766924--13766974	21	2.4	21	78	12	59	49	29	9	11	1.72
13768651--13768718	36	1.9	34	82	5	82	38	20	10	30	1.86
13772786--13772829	21	2.1	21	100	0	88	40	22	18	18	1.91
13773526--13773592	3	22.0	3	91	8	109	64	2	0	32	1.09
13774929--13774963	4	8.8	4	87	12	54	22	2	0	74	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13775835--13775886	27	2.0	26	92	3	86	23	0	0	76	0.78
13779320--13779379	12	4.8	13	76	15	56	65	0	0	35	0.93
13779323--13779361	16	2.4	16	82	0	51	64	0	0	35	0.94
13779319--13779380	22	2.8	22	73	7	63	64	0	0	35	0.94
13780472--13780500	2	14.5	2	100	0	58	51	0	0	48	1.00
13780678--13780766	39	2.3	39	82	9	101	42	1	5	50	1.33
13789740--13789775	17	2.0	19	89	10	58	36	27	16	19	1.93
13801745--13801769	5	5.0	5	100	0	50	60	0	0	40	0.97
13804254--13804300	3	15.7	3	100	0	94	34	0	0	65	0.93
13808817--13808843	13	2.1	13	100	0	54	37	29	14	18	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77