genome.fa.s179.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  19  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3463672--3463736	29	2.2	29	81	5	78	36	1	1	60	1.16
3463681--3463734	14	3.8	14	80	11	65	35	0	1	62	1.06
3463832--3463870	16	2.5	15	91	4	60	51	5	0	43	1.24
3473937--3473971	14	2.5	14	100	0	70	54	8	5	31	1.54
3473938--3473985	14	3.1	15	88	11	62	50	6	8	35	1.58
3474715--3474747	17	2.0	17	88	5	50	33	0	0	66	0.92
3482496--3482546	11	4.6	11	75	7	50	1	1	11	84	0.79
3482500--3482538	17	2.3	17	95	0	69	0	2	10	87	0.65
3482764--3482969	50	4.3	49	74	14	178	41	12	13	33	1.81
3482733--3482969	97	2.5	97	81	7	263	40	13	13	32	1.82
3482828--3482969	47	3.0	47	80	4	151	39	12	15	32	1.85
3483011--3483158	40	3.6	39	81	5	152	35	10	14	39	1.81
3483625--3483671	23	2.0	23	87	0	67	25	17	27	29	1.97
3483923--3483961	11	3.5	11	89	0	51	0	5	5	89	0.58
3483920--3483961	16	2.5	17	85	14	61	0	7	4	88	0.64
3483930--3483960	1	31.0	1	93	0	53	0	3	0	96	0.21
3489400--3489430	3	10.3	3	92	0	53	32	0	3	64	1.09
3491073--3491194	62	1.9	62	80	6	138	39	11	17	31	1.85
3500636--3500695	29	2.1	29	100	0	120	46	6	13	33	1.69
3501165--3501224	22	2.8	21	84	5	66	41	5	11	41	1.63
3501185--3501230	22	2.1	21	84	4	56	41	6	13	39	1.70
3503804--3503871	36	2.0	35	88	8	104	52	0	4	42	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3503897--3503935	19	2.0	20	85	5	53	35	2	0	61	1.10
3513695--3513823	30	4.3	30	76	11	104	39	28	13	17	1.89
3513689--3513820	60	2.2	60	79	5	142	40	28	14	17	1.88
3513776--3513841	30	2.2	30	86	0	87	40	30	12	16	1.85
3513870--3513922	27	2.0	27	84	0	70	49	30	3	16	1.64
3522394--3522433	21	1.9	21	85	10	55	77	5	2	15	1.04
3522450--3522487	13	3.0	13	88	3	60	76	7	0	15	1.01
3523344--3523450	3	36.7	3	77	5	112	64	3	2	28	1.25
3523360--3523452	23	4.0	23	73	23	88	61	5	3	30	1.34
3523354--3523450	26	3.7	25	76	10	88	62	4	3	29	1.29
3523737--3524045	115	2.6	117	80	5	313	44	15	21	19	1.87
3524786--3524923	48	3.0	45	82	10	136	17	18	15	49	1.80
3535529--3535567	13	3.0	13	85	7	53	76	7	0	15	0.99
3536436--3536474	3	13.7	3	84	10	55	66	0	2	30	1.05
3538273--3538316	14	3.4	14	81	12	58	77	0	9	13	0.99
3538262--3538318	13	4.3	13	72	12	53	78	0	10	10	0.95
3538477--3538535	26	2.4	25	77	11	68	55	0	1	42	1.09
3538490--3538546	26	2.3	26	82	8	66	59	0	0	40	0.97
3539298--3539339	17	2.5	17	80	0	57	47	2	0	50	1.14
3539970--3540008	18	2.2	17	90	4	60	79	0	10	10	0.94
3540277--3540332	14	3.8	15	74	9	53	53	0	0	46	1.00
3540291--3540331	8	5.2	8	85	2	57	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3540295--3540346	26	2.1	24	85	7	68	59	0	0	40	0.97
3540873--3540905	16	2.1	15	94	5	57	60	6	0	33	1.21
3541677--3541722	18	2.5	18	85	3	56	80	4	10	4	0.99
3543707--3543738	2	16.5	2	93	6	57	0	50	0	50	1.00
3544639--3544682	22	2.0	22	87	12	65	38	0	0	61	0.96
3548059--3548101	22	2.0	22	85	0	59	58	16	11	13	1.64
3554908--3554949	22	1.9	22	85	0	57	35	9	9	45	1.69
3558863--3558904	22	1.9	22	90	0	66	33	11	9	45	1.73
3559137--3559181	3	15.0	3	100	0	90	66	0	0	33	0.92
3568318--3568350	16	2.1	15	94	5	57	78	0	9	12	0.95
3571206--3571259	20	2.8	18	75	21	56	37	5	9	48	1.59
3572266--3572324	30	2.0	30	84	12	79	52	3	5	38	1.40
3572776--3572825	15	3.4	15	80	5	57	18	6	28	48	1.71
3573547--3573663	63	1.9	63	85	7	168	37	14	15	32	1.88
3573550--3573685	63	2.2	61	82	10	152	37	14	15	32	1.88
3573856--3574000	65	2.3	63	82	7	159	37	12	17	33	1.87
3573854--3574177	63	5.2	62	75	8	226	40	12	14	33	1.83
3574300--3574369	35	2.0	35	88	0	104	32	10	21	35	1.87
3577539--3577620	25	3.2	25	82	5	94	48	23	6	21	1.72
3577621--3577684	28	2.2	28	91	5	101	51	21	4	21	1.66
3578924--3579303	186	2.0	186	87	3	541	40	9	13	36	1.78
3585558--3585996	161	2.7	158	81	7	442	31	10	15	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3587397--3587499	33	3.1	33	78	8	102	29	14	16	39	1.88
3587454--3587522	33	2.1	33	83	5	86	30	13	17	39	1.87
3599439--3599479	19	2.2	19	86	0	55	51	2	14	31	1.56
3602486--3602557	32	2.2	32	92	0	117	45	8	23	22	1.79
3604153--3604194	19	2.2	19	91	0	66	11	21	0	66	1.23
3605362--3605417	21	2.7	19	78	13	58	66	8	0	25	1.21
3605453--3605505	24	2.2	24	86	6	72	64	5	3	26	1.33
3605454--3605523	16	4.2	16	78	10	52	61	10	2	25	1.41
3605453--3605497	8	5.8	8	86	2	56	64	4	4	26	1.32
3605586--3605631	23	2.0	22	87	4	65	76	4	4	15	1.11
3605734--3605782	17	2.8	16	82	14	53	67	2	4	26	1.19
3605986--3606028	17	2.5	17	76	3	50	18	4	9	67	1.36
3606649--3606692	20	2.3	18	78	14	52	36	9	9	45	1.68
3606654--3606693	20	2.0	20	90	0	62	35	10	7	47	1.65
3617243--3617268	2	13.0	2	100	0	52	0	50	0	50	1.00
3618656--3618694	3	13.0	3	100	0	78	33	0	0	66	0.92
3618872--3618948	29	2.7	29	86	6	95	59	6	0	33	1.23
3621295--3621323	2	14.5	2	100	0	58	51	0	0	48	1.00
3623517--3623551	13	2.7	13	90	0	52	40	0	0	60	0.97
3626619--3626655	2	18.5	2	100	0	74	48	0	0	51	1.00
3628766--3628841	20	3.7	20	73	20	59	51	1	3	43	1.28
3628825--3628859	18	1.9	18	88	0	52	48	0	2	48	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3628898--3629245	174	2.0	172	94	1	606	40	6	4	49	1.48
3633774--3633812	17	2.2	17	90	4	60	66	0	0	33	0.92
3634592--3634637	8	5.5	8	97	2	74	73	0	4	21	1.00
3634700--3634743	20	2.1	21	87	4	63	65	4	13	15	1.41
3640767--3640799	14	2.3	15	94	5	59	12	0	6	81	0.85
3645956--3646035	30	2.5	33	78	16	94	36	25	11	27	1.90
3645970--3646040	30	2.4	30	87	0	106	33	28	9	28	1.89
3649975--3650164	34	5.7	34	73	8	149	36	18	15	28	1.92
3649975--3650224	98	2.5	99	83	1	297	36	18	16	28	1.93
3650459--3650515	14	4.3	14	84	10	75	31	21	8	38	1.84
3650809--3650916	22	4.9	22	80	0	117	33	18	11	37	1.86
3650808--3650916	44	2.5	44	83	7	141	33	18	11	36	1.87
3652387--3652440	24	2.3	23	75	9	54	77	7	11	3	1.09
3654154--3654202	24	2.1	23	81	11	55	34	14	26	24	1.94
3655074--3655126	26	2.0	26	81	0	61	66	1	3	28	1.20
3660853--3660887	18	1.9	18	100	0	70	5	22	31	40	1.78
3666462--3666525	19	3.8	19	66	30	63	35	0	4	59	1.18
3666468--3666526	30	2.0	30	93	0	100	33	0	5	61	1.18
3666646--3666712	19	3.6	19	75	18	77	32	0	7	59	1.25
3666440--3666804	188	2.0	181	88	4	534	35	4	11	47	1.61
3669711--3669844	55	2.4	55	82	2	162	47	11	9	32	1.72
3673439--3673570	66	2.0	66	85	2	176	38	18	12	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3673626--3673660	18	1.9	18	88	0	52	0	11	5	82	0.82
3676917--3676949	12	2.5	13	90	9	50	45	39	0	15	1.46
3676926--3676964	12	3.2	12	81	0	51	48	35	2	12	1.55
3683818--3683873	27	2.0	28	96	3	105	33	3	19	42	1.69
3683966--3684112	77	1.9	77	80	8	174	35	1	14	48	1.53
3691513--3691625	35	3.1	35	67	20	106	21	15	15	47	1.82
3691731--3691784	2	27.0	2	92	0	90	50	0	1	48	1.11
3693365--3693407	22	2.0	22	85	0	59	34	2	4	58	1.32
3693888--3693979	30	3.1	30	82	3	114	40	4	18	36	1.71
3695694--3695734	2	20.5	2	84	0	55	48	0	2	48	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77