genome.fa.s179.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  67  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13397439--13397975	267	2.0	267	88	2	803	31	8	6	54	1.55
13399689--13399733	19	2.3	20	77	11	58	57	0	2	40	1.11
13400786--13400825	22	1.9	20	90	10	62	45	0	0	55	0.99
13409230--13409273	19	2.4	19	85	14	58	54	0	0	45	0.99
13409946--13409981	17	2.1	18	89	5	56	27	5	0	66	1.13
13410040--13410077	18	2.1	18	90	9	60	44	5	0	50	1.24
13410111--13410174	16	4.1	16	75	17	62	48	3	0	48	1.17
13410622--13410651	6	5.0	6	100	0	60	66	0	0	33	0.92
13415886--13416121	102	2.3	102	82	2	287	45	17	6	30	1.75
13419118--13419169	19	2.7	19	82	8	52	65	7	1	25	1.30
13419135--13419170	19	1.9	19	88	5	56	63	5	2	27	1.30
13419341--13419386	18	2.6	18	86	6	67	67	2	4	26	1.21
13430674--13430709	18	1.9	19	88	5	56	83	0	11	5	0.80
13431462--13432098	48	13.4	47	82	5	716	29	10	21	37	1.88
13432082--13432113	15	2.1	15	100	0	64	28	0	21	50	1.49
13432038--13432164	60	2.0	64	85	8	172	26	10	22	40	1.86
13432097--13432531	47	8.9	48	79	8	441	26	13	23	36	1.92
13431462--13432511	94	10.8	97	79	10	949	28	12	22	37	1.90
13432296--13432397	53	1.9	53	84	4	134	32	11	21	34	1.90
13433768--13433818	23	2.2	24	86	6	70	66	5	1	25	1.24
13433972--13434017	18	2.6	18	86	6	67	67	2	4	26	1.21
13435821--13435976	52	3.0	52	83	5	199	28	19	7	44	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13436260--13436383	25	5.0	25	76	7	101	20	32	8	39	1.81
13436400--13436460	31	2.0	30	90	3	95	24	24	19	31	1.98
13436938--13437094	52	3.0	51	87	5	199	26	21	8	43	1.82
13437111--13437155	22	2.0	22	91	0	72	53	22	0	24	1.46
13437118--13437155	11	3.5	11	88	0	58	55	23	0	21	1.44
13441937--13441961	13	1.9	13	100	0	50	60	0	0	40	0.97
13442302--13442350	21	2.3	21	92	0	80	42	10	4	42	1.57
13442330--13442393	25	2.5	25	82	10	67	46	4	1	46	1.33
13445335--13445391	26	2.2	26	87	6	80	49	0	10	40	1.37
13445432--13445478	17	2.7	18	75	21	55	34	6	2	57	1.36
13450822--13450862	2	20.5	2	100	0	82	51	48	0	0	1.00
13459871--13459903	14	2.4	14	94	0	57	12	9	12	66	1.44
13464739--13464769	2	15.0	2	93	6	53	48	0	3	48	1.17
13466149--13466211	6	10.7	6	76	19	53	68	0	1	30	0.99
13466147--13466194	15	3.1	16	80	20	57	64	0	2	33	1.05
13466147--13466211	16	3.7	17	75	25	64	66	0	1	32	1.01
13468424--13468474	22	2.3	21	81	15	59	56	0	1	41	1.10
13469888--13469921	17	2.0	17	88	0	50	44	2	0	52	1.16
13469887--13469988	41	2.5	40	80	16	120	47	2	0	49	1.23
13469975--13470004	14	2.2	14	94	5	53	43	0	0	56	0.99
13470045--13470075	14	2.2	14	100	0	62	45	6	0	48	1.28
13473964--13473989	12	2.2	12	100	0	52	42	23	0	34	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13478565--13478594	2	15.0	2	92	0	51	46	0	0	53	1.00
13479162--13479213	2	26.0	2	100	0	104	0	50	0	50	1.00
13481033--13481088	6	9.2	6	76	16	53	46	1	1	50	1.22
13481623--13481657	2	17.5	2	100	0	70	48	0	0	51	1.00
13495214--13495549	51	6.7	51	78	10	286	27	11	16	44	1.82
13495478--13495745	140	1.9	137	84	3	349	30	13	14	41	1.84
13495526--13495745	48	4.8	44	78	11	237	30	14	13	40	1.85
13496555--13496599	20	2.2	20	84	8	54	75	0	17	6	1.01
13496864--13496903	20	2.0	21	85	5	55	27	0	5	67	1.11
13497169--13497220	19	2.7	20	84	6	70	57	1	0	40	1.10
13499231--13499307	39	2.0	39	97	0	145	28	25	14	31	1.95
13501923--13501958	17	2.2	16	90	9	56	50	5	0	44	1.25
13501929--13501968	17	2.4	17	87	8	55	55	2	0	42	1.13
13505119--13505208	45	2.1	42	87	8	128	37	0	17	44	1.49
13506252--13506282	14	2.2	14	100	0	62	22	0	12	64	1.27
13508560--13508623	27	2.3	27	81	10	67	34	0	4	60	1.17
13508685--13508728	6	7.3	6	80	19	56	68	0	0	31	0.90
13508683--13508728	15	3.0	16	82	17	62	65	0	0	34	0.93
13509697--13509738	21	2.0	21	100	0	84	28	19	0	52	1.46
13520643--13520975	50	6.8	49	80	7	327	27	12	16	43	1.84
13520643--13520975	99	3.4	97	80	7	325	27	12	16	43	1.84
13521004--13521174	92	1.9	91	88	1	261	32	13	12	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13522320--13522359	20	2.0	21	85	5	55	27	0	5	67	1.11
13524705--13524781	39	2.0	39	100	0	154	28	25	12	32	1.93
13526560--13526593	2	17.0	2	87	0	50	44	0	2	52	1.16
13527400--13527436	17	2.2	17	90	4	58	48	5	0	45	1.25
13527407--13527446	17	2.4	17	87	8	55	55	2	0	42	1.13
13528039--13528290	126	2.0	126	100	0	504	29	7	16	46	1.73
13531867--13531897	14	2.2	14	100	0	62	22	0	12	64	1.27
13534227--13534279	22	2.5	22	84	3	72	39	1	9	49	1.46
13534301--13534369	6	11.7	6	78	17	65	68	0	1	30	0.99
13534301--13534365	20	3.5	19	78	17	75	67	0	1	30	1.00
13534301--13534381	19	4.4	19	76	17	73	69	0	1	29	0.97
13535322--13535364	22	2.0	22	86	9	61	32	11	0	55	1.36
13537847--13537879	15	2.1	16	88	5	50	78	0	0	21	0.75
13538069--13538142	19	3.7	18	69	26	51	43	2	0	54	1.14
13538029--13538132	41	2.5	39	80	13	111	45	3	0	50	1.26
13547988--13548057	2	35.5	2	84	13	92	45	1	2	50	1.25
13550122--13550152	2	15.0	2	93	6	53	48	0	3	48	1.17
13551488--13551530	22	2.0	22	85	0	59	37	4	9	48	1.56
13551545--13551588	19	2.2	20	92	4	72	52	2	0	45	1.13
13551581--13551653	6	12.7	6	80	13	75	67	0	0	32	0.91
13551620--13551667	12	4.1	12	92	7	57	66	0	0	33	0.92
13553546--13553583	19	2.1	19	85	5	51	52	0	2	44	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13555208--13555310	41	2.5	40	80	14	120	46	2	0	49	1.23
13555202--13555284	18	4.3	18	67	24	53	45	3	1	49	1.27
13555297--13555326	14	2.2	14	94	5	53	43	0	0	56	0.99
13555367--13555397	14	2.2	14	100	0	62	45	6	0	48	1.28
13562784--13562832	20	2.4	21	80	16	59	53	0	2	44	1.12
13563169--13563194	2	13.0	2	100	0	52	50	0	0	50	1.00
13565543--13565577	6	5.8	6	86	0	52	31	0	65	2	1.07
13570913--13570939	2	13.5	2	100	0	54	51	0	0	48	1.00
13574559--13574588	15	2.1	15	93	6	53	56	0	0	43	0.99
13577253--13577291	13	2.9	13	84	3	51	82	7	0	10	0.86
13589999--13590023	13	1.9	13	100	0	50	56	0	0	44	0.99
13590096--13590123	3	9.3	3	100	0	56	64	0	0	35	0.94
13607818--13607883	30	2.1	31	83	10	82	42	0	7	50	1.31
13609186--13609231	12	3.7	12	81	18	58	73	6	10	8	1.23
13611273--13611324	20	2.5	20	84	6	68	44	0	0	55	0.99
13611297--13611330	18	1.9	18	88	5	52	52	0	0	47	1.00
13613954--13613984	16	1.9	16	93	0	53	58	3	6	32	1.40
13614139--13614163	3	8.3	3	100	0	50	68	0	0	32	0.90
13614153--13614210	23	2.5	23	81	13	66	74	3	3	18	1.11
13614173--13614230	18	3.3	18	80	2	64	79	1	8	10	1.01
13614139--13614212	17	4.1	17	73	16	60	72	2	2	21	1.09
13615451--13615545	30	3.2	30	87	0	145	32	11	22	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13617162--13617269	53	2.0	53	94	0	189	15	12	9	62	1.55
13620119--13620155	19	1.9	19	94	0	65	21	40	10	27	1.86
13621392--13621458	31	2.2	31	86	2	91	43	0	5	50	1.26
13621434--13621462	14	2.1	14	93	6	51	48	0	0	51	1.00
13622762--13622807	12	3.7	12	81	18	58	73	6	10	8	1.23
13627525--13627555	16	1.9	16	100	0	62	58	6	6	29	1.48
13627710--13627761	3	17.3	3	92	7	88	67	0	1	30	1.02
13627754--13627808	22	2.4	23	82	11	69	74	3	3	18	1.11
13627771--13627810	17	2.4	17	83	8	55	80	2	2	15	0.93
13627778--13627820	18	2.4	18	84	3	52	81	2	4	11	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77