genome.fa.s179.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  46  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8891907--8891967	28	2.3	26	86	10	88	45	3	22	27	1.68
8891918--8891978	28	2.2	28	96	0	113	44	4	26	24	1.74
8891918--8891964	17	3.1	17	66	33	52	46	4	23	25	1.70
8892998--8893179	53	3.5	53	78	8	183	29	13	8	48	1.71
8892998--8893193	105	1.9	105	88	2	295	27	12	7	52	1.67
8893654--8893708	25	2.2	25	80	9	58	41	7	3	47	1.49
8893393--8893749	187	1.9	189	82	7	460	36	10	6	46	1.64
8895658--8895704	22	2.1	23	84	11	62	48	4	6	40	1.48
8895678--8895720	17	2.7	16	86	10	61	48	0	4	46	1.22
8895827--8895869	13	3.3	13	80	0	50	51	0	0	48	1.00
8896171--8896212	22	1.9	22	95	0	75	21	28	4	45	1.72
8898924--8898963	17	2.4	17	86	0	53	47	2	2	47	1.29
8899850--8899896	22	2.1	22	96	0	85	27	4	10	57	1.51
8909067--8909099	14	2.3	15	89	5	50	63	0	0	36	0.95
8909854--8909945	3	30.3	3	75	6	60	56	0	41	2	1.11
8914289--8915433	571	2.0	572	83	4	1467	32	12	13	41	1.81
8917189--8917242	24	2.3	23	83	3	63	16	7	22	53	1.67
8918195--8918238	19	2.3	19	96	0	79	36	4	29	29	1.77
8928268--8928303	15	2.4	15	90	0	54	27	2	22	47	1.65
8928488--8928557	35	2.0	35	100	0	140	34	8	14	42	1.76
8931156--8931198	2	21.5	2	95	0	77	48	0	51	0	1.00
8937043--8937076	2	17.0	2	100	0	68	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8939445--8939527	35	2.3	36	77	8	89	62	0	2	34	1.08
8943157--8943196	2	20.0	2	84	0	53	47	5	0	47	1.24
8948021--8948317	100	3.0	100	90	2	452	34	15	17	32	1.92
8954492--8954537	12	3.8	12	85	0	65	50	0	4	45	1.21
8954492--8954537	24	1.9	24	95	0	83	50	0	4	45	1.21
8955844--8955872	15	1.9	15	100	0	58	75	0	0	24	0.80
8956049--8956093	16	2.8	16	79	0	54	46	24	0	28	1.53
8956152--8956216	15	4.2	16	79	16	68	56	26	0	16	1.40
8956152--8956231	14	5.4	14	79	10	70	56	25	1	17	1.49
8956151--8956249	14	6.5	15	71	11	67	54	24	1	20	1.51
8956220--8956289	22	3.1	23	78	12	74	51	21	0	27	1.48
8956266--8956304	13	3.0	13	80	0	51	53	23	0	23	1.46
8956258--8956406	29	5.1	29	68	18	96	47	26	0	24	1.57
8956365--8956413	15	3.2	15	82	2	53	51	28	0	20	1.48
8967824--8967879	26	2.2	26	87	6	78	78	3	12	5	1.05
8967822--8967892	10	7.6	10	70	19	55	80	2	12	4	0.97
8967822--8967892	21	3.2	21	69	21	56	80	2	12	4	0.97
8969422--8969510	39	2.3	40	88	5	137	17	19	15	47	1.83
8968942--8969471	110	4.8	110	83	3	629	20	19	10	49	1.78
8968942--8969471	220	2.4	220	84	2	699	20	19	10	49	1.78
8969312--8969618	149	2.1	150	83	4	399	20	17	11	49	1.78
8969775--8969902	34	3.7	35	81	8	145	23	23	8	44	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8970248--8970293	12	3.8	12	82	0	56	47	0	6	45	1.28
8970248--8970293	24	1.9	24	90	0	74	47	0	6	45	1.28
8970406--8970459	26	2.1	26	85	0	72	27	46	9	16	1.78
8971620--8971651	6	5.7	6	85	14	50	75	0	0	25	0.81
8971617--8971652	16	2.2	16	100	0	72	77	0	0	22	0.76
8971830--8971939	57	1.9	58	83	5	143	45	30	0	23	1.59
8971918--8971965	15	3.3	15	88	2	71	56	27	0	16	1.41
8971918--8972029	28	3.9	28	77	10	84	50	25	1	21	1.58
8971952--8972078	57	2.2	59	83	8	163	44	29	1	24	1.63
8971952--8972111	29	5.5	29	73	7	103	45	28	1	24	1.64
8971952--8972111	58	2.8	58	81	8	150	45	28	1	24	1.64
8971926--8972144	29	7.6	29	75	6	99	47	28	1	22	1.60
8972156--8972243	29	3.1	28	75	9	88	43	31	0	25	1.55
8975710--8975744	15	2.2	15	90	10	52	0	28	0	71	0.86
8976011--8976050	21	1.9	21	89	0	62	2	0	22	75	0.93
8976207--8976255	22	2.2	23	85	3	64	14	8	44	32	1.74
8976376--8976412	12	3.1	12	88	0	56	43	0	2	54	1.14
8976614--8977300	46	14.5	46	80	7	716	38	22	11	28	1.89
8989076--8989106	11	2.7	12	90	10	55	29	0	0	70	0.87
8990447--8990498	23	2.3	23	83	3	70	15	7	44	32	1.75
8990624--8990669	21	2.2	21	88	0	65	45	0	2	52	1.13
8990624--8990669	12	4.1	12	75	16	53	45	0	2	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8996708--8996747	19	2.2	19	86	4	55	37	0	2	60	1.11
8996729--8996772	22	2.0	22	86	4	61	34	0	2	63	1.07
8996738--8996780	19	2.2	20	83	4	52	30	0	0	69	0.88
8997039--8997227	93	2.0	93	89	2	290	43	6	3	47	1.44
9002527--9002569	2	23.0	2	86	13	65	0	48	0	51	1.00
9004508--9004545	18	2.1	18	95	0	67	23	26	26	23	2.00
9007349--9007406	28	2.1	28	86	0	80	60	5	8	25	1.47
9017793--9017831	16	2.4	16	86	0	60	35	2	20	41	1.66
9018530--9018569	20	2.0	20	85	9	55	32	7	7	52	1.58
9020917--9020975	2	29.5	2	100	0	118	0	50	0	49	1.00
9027456--9027495	8	4.4	10	84	15	52	42	0	0	57	0.98
9028984--9029037	2	27.0	2	100	0	108	0	50	0	50	1.00
9033376--9033409	6	5.8	6	86	6	52	14	2	0	82	0.79
9033766--9033791	2	13.0	2	100	0	52	50	0	0	50	1.00
9035989--9036641	325	2.0	325	100	0	1306	40	14	18	26	1.89
9039419--9039472	10	5.2	11	73	10	51	29	0	0	70	0.88
9039432--9039479	15	3.3	14	73	21	53	31	0	0	68	0.90
9039415--9039484	16	4.5	15	81	15	81	31	0	0	68	0.90
9039473--9039517	19	2.4	19	92	0	72	44	2	0	53	1.13
9041652--9041726	27	2.6	28	77	8	71	48	14	2	34	1.58
9043785--9043863	40	2.0	40	85	5	106	31	7	18	41	1.79
9044008--9044050	22	2.0	22	86	8	63	41	34	4	18	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9044334--9044412	40	2.0	40	85	5	106	31	7	18	41	1.79
9044885--9044963	40	2.0	40	85	5	106	31	7	18	41	1.79
9043725--9045871	551	3.9	551	98	0	4111	34	12	16	36	1.87
9045436--9045514	40	2.0	40	85	5	106	31	7	18	41	1.79
9046231--9046294	33	2.0	30	88	8	92	35	6	0	57	1.24
9046376--9046404	2	14.5	2	100	0	58	48	0	0	51	1.00
9048433--9048464	2	16.0	2	100	0	64	50	0	0	50	1.00
9048527--9048576	26	1.9	26	92	8	84	44	0	6	50	1.26
9055305--9055440	63	2.2	64	82	7	163	40	5	9	44	1.61
9057257--9057300	4	11.0	4	80	9	54	27	2	0	70	0.99
9057255--9057300	12	3.8	12	88	5	67	30	2	0	67	1.03
9074885--9075014	69	1.9	69	85	0	179	38	14	15	31	1.88
9082539--9082578	13	3.3	13	76	16	50	5	15	0	80	0.88
9087153--9087705	280	2.0	280	88	2	833	37	18	15	28	1.91
9089690--9089862	25	6.9	25	82	0	193	46	29	5	19	1.71
9089710--9089862	75	2.0	75	87	0	216	47	27	5	19	1.70
9094666--9094814	15	9.1	16	70	19	71	29	2	4	63	1.25
9094663--9094806	9	17.5	8	66	20	50	29	1	4	64	1.22
9094771--9094814	3	15.3	3	81	9	56	34	4	0	61	1.16
9094771--9094814	17	2.6	17	92	0	70	34	4	0	61	1.16
9095399--9095448	20	2.6	19	75	6	55	26	20	18	36	1.95
9095767--9095910	10	14.4	9	71	22	76	18	2	2	76	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9095780--9095843	32	2.0	30	82	14	76	25	1	3	70	1.11
9095940--9096188	59	4.2	58	81	13	292	48	6	10	35	1.63
9096151--9096222	34	2.1	34	92	0	117	50	6	8	34	1.60
9096092--9096280	93	2.0	93	95	2	344	47	6	9	36	1.62
9096185--9096384	59	3.4	59	79	14	252	44	7	12	37	1.69
9095974--9096384	209	1.9	207	84	11	550	45	6	11	36	1.67
9096519--9096579	19	3.2	19	70	9	52	27	19	14	37	1.91
9096918--9097056	10	13.8	10	69	17	74	19	5	2	73	1.12
9096976--9097043	19	3.3	21	76	15	54	14	5	1	77	1.02
9096995--9097043	19	2.7	18	78	9	55	14	4	2	79	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77