genome.fa.s179.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  66  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13209517--13209555	20	2.0	20	84	0	51	71	7	5	15	1.26
13209606--13209699	38	2.4	39	92	5	156	23	52	12	11	1.72
13211194--13211222	12	2.5	12	94	5	51	68	0	0	31	0.89
13211260--13211356	48	2.0	48	100	0	194	36	10	12	41	1.77
13211989--13212045	17	3.4	16	79	13	60	84	10	1	3	0.82
13211989--13212045	26	2.2	25	85	14	73	84	10	1	3	0.82
13211989--13212036	21	2.2	20	86	13	69	85	10	0	4	0.73
13212648--13212682	15	2.2	16	90	5	54	57	2	0	40	1.14
13216724--13216860	3	44.3	3	69	24	58	29	1	3	65	1.18
13216767--13216875	14	7.2	14	66	20	51	27	0	3	67	1.13
13216763--13216873	48	2.3	48	77	9	120	27	0	3	67	1.13
13216823--13216864	11	3.8	11	87	6	50	28	0	0	71	0.86
13217242--13217295	26	2.2	25	90	6	83	40	9	18	31	1.82
13217437--13217484	20	2.5	20	93	3	80	22	27	27	22	1.99
13217727--13217768	14	3.1	15	80	19	56	7	42	21	28	1.79
13217727--13217763	13	2.7	14	80	20	51	8	43	24	24	1.81
13217815--13217857	1	43.0	1	100	0	86	0	0	0	100	0.00
13217896--13218346	152	3.0	152	95	1	805	29	14	17	38	1.90
13221633--13221661	1	29.0	1	100	0	58	100	0	0	0	0.00
13222030--13222105	22	3.5	22	74	18	61	78	0	14	6	0.93
13222035--13222096	10	5.0	13	79	18	62	82	0	12	4	0.82
13222057--13222088	1	32.0	1	93	0	55	96	0	3	0	0.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13222143--13222178	1	36.0	1	94	0	63	97	2	0	0	0.18
13223348--13224006	42	16.1	41	90	5	947	23	17	22	36	1.95
13223348--13224006	124	5.4	123	91	4	1016	23	17	22	36	1.95
13223348--13224006	287	2.3	284	91	4	1067	23	17	22	36	1.95
13224013--13224115	49	2.1	47	86	10	138	84	9	0	5	0.77
13224038--13224116	8	9.8	8	78	17	58	81	10	0	8	0.89
13224014--13224107	1	94.0	1	77	0	71	86	8	0	5	0.71
13224378--13224443	4	16.2	4	78	9	55	30	0	1	68	0.99
13224370--13224443	12	6.0	13	76	16	59	31	0	2	66	1.06
13224399--13224444	17	2.8	17	78	15	51	28	0	0	71	0.86
13224804--13224857	26	2.2	25	90	6	83	40	9	18	31	1.82
13225001--13225049	20	2.5	20	93	0	80	22	26	26	24	2.00
13225288--13225329	14	3.1	15	80	19	56	7	42	21	28	1.79
13225288--13225324	13	2.7	14	80	20	51	8	43	24	24	1.81
13225376--13225406	1	31.0	1	100	0	62	0	0	0	100	0.00
13225444--13225894	152	3.0	152	95	1	805	29	14	17	38	1.90
13230382--13230992	48	13.0	48	82	7	752	25	13	24	36	1.92
13230382--13230995	95	6.5	96	84	5	749	25	13	24	36	1.92
13230379--13231000	233	2.6	231	88	4	890	25	13	24	36	1.92
13231192--13231234	18	2.4	18	92	0	68	76	9	4	9	1.14
13231154--13231234	38	2.1	38	83	0	99	69	7	7	16	1.35
13231175--13231236	20	3.2	20	75	9	65	74	6	4	14	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13231312--13231370	18	3.2	18	69	21	59	28	52	8	10	1.64
13231286--13231378	37	2.4	39	89	5	145	26	51	10	10	1.69
13234441--13234499	20	2.9	20	72	20	59	22	3	5	69	1.23
13236923--13237457	60	8.9	58	78	9	504	44	7	12	35	1.70
13237098--13237137	16	2.4	17	83	8	55	50	5	0	45	1.23
13236956--13237459	119	4.2	120	87	5	675	43	7	13	36	1.71
13236939--13237457	237	2.2	242	86	4	739	44	7	13	35	1.71
13238166--13238213	20	2.5	19	83	16	55	68	6	2	22	1.23
13240527--13240589	25	2.5	25	81	0	81	46	25	6	22	1.75
13241249--13243452	187	11.9	188	81	6	2269	40	12	13	33	1.82
13241249--13243464	748	3.0	738	83	5	2652	40	12	13	33	1.82
13243640--13243728	39	2.3	39	100	0	178	29	21	14	34	1.93
13251364--13251436	34	2.1	35	82	2	85	36	12	16	34	1.86
13251969--13252042	20	3.7	19	73	15	62	52	1	5	40	1.33
13251838--13252540	217	3.2	217	77	9	559	51	5	11	31	1.60
13252031--13252748	213	3.3	208	76	11	499	50	5	10	32	1.61
13253127--13253183	21	2.8	20	79	10	62	57	1	3	36	1.26
13255306--13255333	2	14.0	2	100	0	56	50	0	0	50	1.00
13255606--13255755	72	2.1	72	94	0	264	20	36	12	31	1.90
13274699--13274723	10	2.5	10	100	0	50	40	8	0	52	1.31
13281244--13281277	17	2.0	17	94	0	59	29	20	14	35	1.93
13283180--13283408	72	3.0	75	86	10	324	32	11	13	42	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13283350--13283392	22	2.0	22	81	9	52	30	11	13	44	1.80
13284677--13284868	13	13.2	13	66	25	52	67	4	2	25	1.23
13284715--13284873	3	51.3	3	71	24	59	66	3	2	27	1.22
13284718--13284764	14	3.3	14	83	16	53	61	2	2	34	1.20
13285950--13285980	14	2.2	14	100	0	62	51	6	0	41	1.27
13293055--13293079	10	2.5	10	100	0	50	40	8	0	52	1.31
13300750--13300799	15	3.4	15	75	8	50	80	0	2	18	0.82
13300752--13300800	21	2.4	20	87	12	73	79	0	2	18	0.83
13300754--13300800	13	3.5	13	81	16	51	78	0	2	19	0.85
13301554--13301781	72	3.0	76	88	8	340	32	11	14	42	1.81
13301723--13301765	22	2.0	22	81	9	52	30	11	13	44	1.80
13303159--13303191	16	2.1	16	88	5	50	66	3	0	30	1.06
13304303--13304333	14	2.2	14	100	0	62	51	6	0	41	1.27
13307560--13307604	20	2.5	17	80	16	54	77	0	2	20	0.87
13307901--13307955	19	2.9	19	89	5	85	30	9	18	41	1.81
13309135--13309191	28	2.0	29	86	6	82	40	8	3	47	1.52
13311349--13311995	72	8.6	77	74	11	454	34	11	12	41	1.79
13311344--13311995	150	4.4	149	80	7	612	34	11	12	41	1.79
13311730--13312000	143	1.9	144	82	2	348	34	11	11	42	1.77
13311934--13312061	67	1.9	65	81	6	150	29	14	14	42	1.84
13313460--13313500	17	2.4	17	87	4	55	21	2	43	31	1.66
13319483--13319507	2	12.5	2	100	0	50	52	48	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13325427--13325451	10	2.5	10	100	0	50	40	8	0	52	1.31
13333333--13333376	19	2.3	19	92	0	70	29	11	18	40	1.85
13334490--13334546	28	2.0	28	86	6	80	40	5	3	50	1.42
13337047--13337342	41	7.1	41	89	3	434	22	16	24	36	1.94
13337047--13337342	83	3.6	82	90	3	443	22	16	24	36	1.94
13337047--13337342	124	2.4	124	89	3	461	22	16	24	36	1.94
13337593--13337702	6	18.3	6	73	20	56	30	0	1	66	1.08
13337628--13337681	3	18.7	3	78	17	53	31	0	0	68	0.90
13337625--13337702	24	3.3	23	81	15	79	29	1	0	69	0.97
13337610--13337690	31	2.5	31	86	6	99	32	0	1	66	0.99
13337593--13337702	11	9.2	12	66	28	56	30	0	1	66	1.08
13337620--13337726	49	2.1	50	81	15	121	29	2	0	66	1.12
13337690--13337759	28	2.5	26	84	11	86	25	10	1	62	1.34
13338621--13338662	21	2.0	22	90	4	68	9	2	4	83	0.88
13338722--13338763	18	2.3	18	83	0	57	14	7	0	78	0.95
13338621--13338758	14	10.7	12	67	21	50	16	4	4	74	1.14
13338796--13339014	59	3.7	59	87	6	311	47	6	11	34	1.65
13338778--13339014	121	2.0	121	90	5	381	48	7	10	33	1.65
13352359--13352398	17	2.4	17	91	4	64	42	2	0	55	1.13
13352366--13352400	17	2.1	17	100	0	70	48	0	0	51	1.00
13353648--13353689	16	2.8	15	78	7	50	47	0	0	52	1.00
13360075--13360107	2	16.5	2	93	0	57	45	0	3	51	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13363473--13363497	1	25.0	1	100	0	50	100	0	0	0	0.00
13368122--13368178	28	2.0	29	93	3	98	26	7	22	43	1.78
13381010--13381057	3	16.0	3	80	0	51	29	60	4	6	1.40
13381010--13381069	21	2.9	21	76	0	57	28	58	6	6	1.49
13381007--13381056	24	2.1	24	84	0	64	26	62	4	8	1.41
13382038--13382098	26	2.3	27	80	8	63	47	3	1	47	1.28
13383981--13384026	20	2.2	20	84	3	56	43	2	0	54	1.12
13394118--13394153	3	12.0	3	100	0	72	0	33	0	66	0.92
13396612--13396652	19	2.1	20	90	4	66	46	0	0	53	1.00
13396900--13396954	24	2.2	25	83	3	67	49	3	3	43	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77