genome.fa.s179.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  47  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9096919--9097043	46	2.7	47	79	10	141	20	4	2	73	1.10
9097024--9097067	23	1.9	23	86	9	63	15	9	0	75	1.05
9097091--9097430	60	5.7	60	87	7	469	46	7	12	33	1.70
9097074--9097430	121	3.0	121	89	8	536	46	7	12	33	1.69
9097083--9097430	61	5.8	58	85	11	463	45	7	12	34	1.69
9097955--9098077	10	12.4	10	70	19	71	19	3	3	73	1.10
9098008--9098060	22	2.5	22	79	17	58	16	5	1	75	1.08
9098008--9098062	21	2.6	21	78	16	60	16	5	1	76	1.06
9098126--9098578	59	7.7	58	82	8	513	46	7	12	33	1.69
9098126--9098578	118	3.8	119	88	4	616	46	7	12	33	1.69
9098126--9098578	119	3.8	119	89	5	654	46	7	12	33	1.69
9101506--9101542	18	2.1	18	94	0	65	24	10	18	45	1.81
9106914--9106958	24	1.9	23	86	4	63	55	0	13	31	1.38
9115277--9115320	18	2.3	18	84	11	52	6	18	22	52	1.69
9119829--9120609	399	2.0	399	90	0	1238	33	16	24	25	1.95
9125183--9125208	13	2.0	13	100	0	52	84	0	0	15	0.62
9134825--9134895	30	2.4	30	90	0	115	22	42	16	18	1.89
9134826--9134903	6	13.0	6	75	0	57	21	43	17	16	1.88
9137215--9137330	57	2.1	57	95	1	207	25	9	20	44	1.81
9142971--9143031	25	2.5	25	89	5	90	40	18	26	14	1.89
9143244--9143285	22	1.9	22	90	0	66	45	9	11	33	1.73
9144777--9144972	98	2.0	98	89	0	302	48	4	5	41	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9154980--9155058	27	2.9	28	82	3	106	35	8	21	34	1.85
9159639--9159679	6	6.0	7	81	13	50	26	2	0	70	0.99
9161606--9161656	21	2.5	21	73	17	54	76	5	3	13	1.11
9164507--9164567	32	1.9	32	93	0	104	32	8	13	45	1.72
9167634--9167665	2	16.0	2	100	0	64	50	0	0	50	1.00
9170166--9170253	42	2.1	42	93	0	149	34	18	10	37	1.84
9179256--9179710	40	11.4	39	75	8	308	29	10	17	42	1.83
9179262--9179710	80	5.6	80	80	7	466	29	11	17	41	1.84
9179262--9179745	160	3.0	159	82	4	562	29	11	17	41	1.84
9180847--9180894	26	1.9	26	83	8	64	64	2	0	33	1.05
9185942--9185977	3	12.0	3	100	0	72	0	33	0	66	0.92
9187545--9187584	11	3.8	11	81	18	50	62	0	2	35	1.09
9190805--9190857	24	2.2	24	83	6	63	41	1	3	52	1.30
9192783--9192812	12	2.5	12	88	0	51	60	0	0	40	0.97
9192988--9193034	14	3.4	14	79	5	51	23	6	0	70	1.10
9194601--9194629	14	2.1	14	100	0	58	58	0	0	41	0.98
9201113--9201143	4	7.8	4	100	0	62	51	0	0	48	1.00
9201138--9201190	24	2.2	24	80	3	63	43	3	7	45	1.50
9201422--9201476	4	14.2	4	74	14	53	30	0	0	69	0.89
9201429--9201485	12	4.8	12	80	8	71	35	0	0	64	0.93
9201426--9201491	8	8.5	8	79	9	57	33	0	0	66	0.92
9201422--9201487	24	2.8	24	86	4	91	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9201477--9201529	22	2.5	22	90	9	83	45	0	0	54	0.99
9203581--9203627	18	2.6	18	83	10	60	31	0	0	68	0.90
9204101--9204168	26	2.9	21	74	23	55	36	0	1	61	1.05
9204691--9204736	19	2.4	20	75	20	53	54	0	4	41	1.20
9205632--9205682	18	2.8	18	84	0	66	19	25	15	39	1.91
9207614--9207640	12	2.2	12	100	0	54	33	33	7	25	1.84
9210638--9210674	19	2.1	18	90	10	58	43	0	2	54	1.14
9220243--9220305	32	2.0	31	81	9	74	50	0	6	42	1.27
9221034--9221164	21	6.3	21	66	9	81	31	8	12	48	1.70
9221535--9221640	22	4.8	22	77	9	99	39	2	6	50	1.43
9221608--9221640	11	3.0	11	90	0	57	39	0	0	60	0.97
9221686--9221767	43	1.9	43	82	5	103	43	13	1	41	1.51
9221671--9221774	22	4.8	22	80	8	106	42	12	2	42	1.57
9221761--9221824	22	2.9	21	75	9	56	29	7	4	57	1.47
9221876--9221969	22	4.3	22	75	11	77	35	5	9	50	1.58
9221890--9222049	22	7.4	22	69	10	78	36	6	7	49	1.58
9221953--9222049	41	2.2	44	80	14	112	36	8	6	49	1.58
9222099--9222157	22	2.7	22	75	15	59	35	5	3	55	1.38
9222486--9222674	87	2.2	88	82	5	231	36	6	7	48	1.59
9222455--9222683	22	10.5	22	75	4	167	37	6	8	47	1.61
9222697--9223120	22	19.5	22	68	11	88	36	8	6	48	1.60
9223119--9223218	44	2.3	43	77	8	103	42	9	3	46	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9223149--9223235	22	4.0	22	83	0	102	39	12	2	45	1.55
9223149--9223209	11	5.6	10	74	16	50	36	8	3	52	1.48
9223149--9223233	44	1.9	44	85	0	116	40	11	2	45	1.53
9223273--9223344	22	3.3	21	78	7	72	34	6	5	52	1.52
9227265--9227333	28	2.4	29	83	7	79	57	0	0	42	0.98
9227820--9227867	24	1.9	26	83	8	64	52	4	0	43	1.20
9235215--9235347	65	2.0	65	95	0	239	42	13	14	29	1.83
9236612--9236647	18	2.0	18	100	0	72	16	22	16	44	1.86
9237425--9237544	53	2.3	52	81	4	134	32	16	4	46	1.66
9239108--9239144	10	3.5	11	82	17	51	18	5	0	75	0.99
9246509--9246548	21	1.9	21	85	10	55	7	17	5	70	1.30
9257058--9257093	18	2.0	18	94	0	63	44	13	25	16	1.85
9258560--9258590	3	10.3	3	92	0	53	29	0	0	70	0.87
9261925--9261963	14	2.7	15	84	8	53	48	5	0	46	1.24
9261925--9261971	15	3.2	14	80	17	51	46	6	0	46	1.28
9262301--9262363	30	2.1	30	85	5	83	65	0	1	33	1.03
9262256--9262371	53	2.3	51	79	7	126	57	0	1	39	1.15
9262274--9262374	52	2.0	53	82	5	127	58	1	1	37	1.21
9264220--9264244	4	6.2	4	100	0	50	24	0	0	76	0.80
9269689--9269760	38	2.0	35	87	12	103	26	5	48	19	1.70
9271424--9271457	13	2.5	14	85	9	52	41	0	0	58	0.98
9272189--9272222	17	2.0	17	94	0	59	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9277681--9277709	2	15.0	2	92	7	51	48	0	0	51	1.00
9278049--9278125	40	1.9	40	91	0	127	35	7	22	35	1.83
9278747--9278781	14	2.5	15	86	13	56	77	0	5	17	0.96
9279169--9279208	3	13.3	3	100	0	80	67	0	0	32	0.91
9284839--9284877	3	12.7	3	89	5	60	66	2	0	30	1.05
9286994--9287025	2	16.0	2	93	0	55	46	3	0	50	1.17
9287729--9287796	31	2.2	32	83	2	84	41	1	1	55	1.18
9288270--9288299	2	15.0	2	100	0	60	50	0	0	50	1.00
9289556--9289585	12	2.5	12	94	0	51	16	0	6	76	0.99
9292986--9293073	15	5.9	15	69	19	51	17	1	31	50	1.53
9292991--9293038	24	2.0	24	92	8	80	20	0	27	52	1.47
9292986--9293062	22	3.4	22	76	15	68	18	1	32	48	1.56
9293035--9293103	14	4.8	14	74	12	50	15	0	28	55	1.41
9293072--9293117	21	2.2	21	88	0	65	21	0	23	54	1.45
9293129--9293191	14	4.5	13	77	16	56	20	4	22	52	1.65
9293145--9293562	29	14.6	28	69	22	153	21	1	28	48	1.59
9293233--9293277	21	2.1	21	91	0	72	17	0	26	55	1.42
9293252--9293561	29	10.6	29	76	11	197	20	1	30	47	1.58
9293413--9293465	16	3.4	16	70	19	58	20	0	35	43	1.52
9293501--9293555	16	3.6	16	76	14	53	16	0	36	47	1.47
9293953--9294010	15	3.7	15	74	17	55	70	5	0	24	1.07
9295174--9295210	18	2.1	18	94	0	65	45	10	8	35	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9295973--9296052	22	3.7	22	76	5	74	32	13	20	33	1.91
9296027--9296248	101	2.2	103	82	4	270	35	10	18	36	1.85
9296139--9296628	126	3.9	126	82	4	447	36	12	16	34	1.86
9296135--9296628	252	2.0	252	82	7	610	36	12	16	34	1.86
9298642--9298666	13	1.9	13	100	0	50	20	0	0	80	0.72
9300558--9302143	536	3.0	529	82	5	1899	29	13	17	39	1.87
9305085--9305165	35	2.2	35	84	6	99	35	3	18	41	1.68
9306488--9306533	21	2.2	21	96	0	83	36	2	8	52	1.45
9310925--9310986	31	2.0	31	84	6	81	29	1	19	50	1.57
9313643--9313686	11	3.9	11	84	3	61	34	20	0	45	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77