genome.fa.s179.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  30  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6007208--6007232	6	4.2	6	100	0	50	84	0	0	16	0.63
6007273--6007346	12	6.2	12	76	13	64	47	0	1	51	1.09
6007277--6007346	38	1.9	35	82	8	86	47	0	1	51	1.09
6008311--6010420	105	20.0	105	83	4	2505	19	24	25	29	1.98
6008324--6010420	210	9.9	210	91	1	3187	19	24	25	29	1.98
6015387--6015644	129	2.0	129	83	1	320	41	15	10	32	1.81
6015614--6015681	21	3.3	21	77	8	68	42	22	10	25	1.84
6015641--6015678	20	1.9	20	88	0	58	36	23	13	26	1.91
6017589--6017747	82	2.0	82	88	1	239	40	12	15	31	1.85
6018342--6018420	27	2.9	27	86	0	104	50	15	10	24	1.74
6021139--6021183	16	3.0	16	81	12	60	77	11	4	6	1.09
6021365--6021428	24	2.7	23	90	7	101	20	43	9	26	1.82
6022089--6022130	21	2.0	22	95	4	77	23	38	26	11	1.90
6022200--6022234	18	1.9	18	88	0	52	37	0	8	54	1.31
6022736--6022766	12	2.6	12	100	0	62	77	0	0	22	0.77
6026377--6026421	19	2.4	19	100	0	90	28	0	8	62	1.25
6026490--6026525	14	2.6	14	91	4	56	77	2	0	19	0.88
6027435--6027529	13	6.9	14	78	14	76	68	1	0	30	0.97
6027437--6027559	5	24.8	5	73	18	89	62	2	0	34	1.14
6027437--6027526	44	2.0	43	81	14	101	67	1	0	31	0.98
6027468--6027529	3	22.0	3	75	21	55	66	1	0	32	1.02
6027579--6027658	26	3.1	26	76	7	90	28	18	27	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6027879--6028388	119	4.3	118	82	3	467	44	13	22	19	1.86
6029046--6029151	45	2.3	46	85	4	135	21	21	11	45	1.83
6037567--6037638	37	1.9	37	91	0	117	38	19	16	25	1.92
6039410--6039463	20	2.7	19	81	16	56	27	0	11	61	1.30
6039622--6039673	25	2.2	23	89	6	77	80	1	1	15	0.88
6039617--6039675	5	11.8	5	81	15	61	81	1	1	15	0.86
6040593--6040630	17	2.3	16	80	20	51	52	5	2	39	1.38
6040666--6040726	26	2.3	26	78	10	70	34	21	22	21	1.97
6044279--6044325	24	1.9	25	82	4	60	51	0	2	46	1.13
6045111--6045162	23	2.3	22	83	9	61	75	5	5	13	1.18
6052123--6052262	70	2.0	71	94	1	246	27	4	17	50	1.65
6056226--6056259	17	1.9	18	94	5	61	26	8	29	35	1.87
6061096--6061123	14	2.0	14	100	0	56	57	0	0	42	0.99
6062569--6062610	21	1.9	22	85	9	59	16	9	2	71	1.23
6063192--6063240	18	2.7	19	78	9	66	42	0	0	57	0.99
6063190--6063257	32	2.1	32	83	5	82	44	0	0	55	0.99
6063237--6063294	29	2.0	29	80	12	66	48	5	0	46	1.24
6064412--6064454	21	2.0	21	95	0	77	44	16	16	23	1.86
6067849--6067990	70	2.0	71	93	1	241	26	4	17	50	1.66
6068906--6068948	2	21.5	2	90	0	68	55	0	0	44	0.99
6080894--6080921	14	2.0	14	100	0	56	57	0	0	42	0.99
6088093--6088143	23	2.2	23	100	0	102	11	3	7	76	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6087679--6088589	469	1.9	472	93	2	1580	35	12	13	38	1.82
6088795--6088820	13	2.0	13	100	0	52	53	0	0	46	1.00
6088626--6088879	131	1.9	129	89	5	395	45	7	2	44	1.47
6095420--6095470	25	2.0	25	84	7	66	43	7	5	43	1.57
6096258--6096306	19	2.4	21	80	13	57	61	4	6	28	1.38
6096520--6096554	2	17.5	2	100	0	70	51	0	0	48	1.00
6099467--6099512	24	1.9	25	86	8	69	34	8	2	54	1.43
6100203--6100244	16	2.7	15	82	10	57	9	4	7	78	1.08
6100518--6100567	26	1.9	26	84	8	66	36	4	0	60	1.16
6101130--6101156	6	4.5	6	100	0	54	18	0	0	81	0.69
6119404--6119470	22	3.1	22	85	8	77	55	0	0	44	0.99
6119438--6119475	16	2.4	16	82	8	51	60	0	0	39	0.97
6119437--6119474	14	2.7	14	84	11	51	60	0	0	39	0.97
6120932--6120971	12	3.1	12	80	19	53	60	2	0	37	1.11
6121362--6121391	12	2.5	12	94	0	51	70	0	0	30	0.88
6121440--6121496	19	3.2	18	73	7	53	42	0	0	57	0.98
6123072--6123121	2	25.0	2	95	0	91	48	0	0	52	1.00
6138350--6138551	99	2.0	101	92	5	336	28	9	20	41	1.84
6146529--6146670	74	1.9	73	90	8	225	58	0	5	35	1.27
6150312--6150365	21	2.5	21	88	8	74	46	3	0	50	1.19
6151604--6151645	12	3.6	12	83	3	59	42	11	0	45	1.41
6151597--6151644	24	2.0	23	88	11	71	45	12	0	41	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6155934--6156251	136	2.3	136	86	4	419	47	9	5	37	1.59
6159346--6159380	18	1.9	18	88	0	52	34	0	8	57	1.29
6162491--6162526	17	2.1	17	94	0	63	38	8	0	52	1.32
6165127--6165170	22	1.9	24	86	9	65	40	0	2	56	1.11
6165769--6165803	18	1.9	18	88	0	52	34	0	8	57	1.29
6166463--6166502	16	2.5	16	87	0	62	12	0	7	80	0.91
6167494--6167589	33	2.9	32	83	6	111	38	19	11	30	1.87
6167686--6167945	34	7.8	33	67	16	126	38	18	12	30	1.88
6167694--6167954	66	3.9	67	81	5	255	37	18	12	31	1.88
6168034--6168130	33	2.9	33	85	0	104	34	10	17	38	1.84
6168035--6168223	66	2.9	65	80	6	175	32	14	16	36	1.89
6168640--6168713	32	2.3	32	81	6	87	47	16	12	24	1.80
6168745--6168899	83	1.9	82	85	6	215	38	10	14	37	1.80
6169195--6169277	29	2.9	29	82	8	89	40	13	16	28	1.86
6169196--6169306	29	3.8	29	78	11	86	39	15	16	28	1.89
6174632--6174667	15	2.3	16	90	4	56	13	0	5	80	0.88
6175486--6175530	6	7.5	6	82	9	56	15	0	13	71	1.15
6175744--6175787	14	3.2	13	90	6	52	27	2	13	56	1.49
6180456--6180495	3	13.0	3	94	5	71	65	0	2	32	1.06
6181854--6181926	37	2.0	37	94	0	128	43	15	5	35	1.69
6182845--6182886	21	2.0	22	85	4	59	76	9	7	7	1.17
6183311--6183355	21	2.1	22	87	4	65	40	4	2	53	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6184598--6184639	21	2.0	21	81	9	50	28	4	0	66	1.12
6185086--6185185	41	2.4	41	80	9	105	45	4	7	44	1.49
6185588--6185627	21	1.9	21	90	10	64	52	5	0	42	1.23
6188183--6188658	223	2.1	221	81	7	536	50	7	9	32	1.62
6188699--6188743	16	2.6	16	82	10	54	66	2	6	24	1.27
6187339--6189694	938	2.5	917	78	7	2296	52	6	10	31	1.60
6189525--6189909	210	1.8	211	81	9	480	54	3	9	32	1.49
6189877--6190003	67	1.9	67	86	3	184	52	6	9	31	1.58
6205589--6205615	9	3.0	9	100	0	54	66	22	0	11	1.22
6206652--6206717	33	2.0	33	96	0	123	40	6	4	48	1.48
6206900--6206999	49	2.0	49	96	0	182	30	6	16	48	1.70
6207968--6208011	2	22.0	2	100	0	88	50	0	0	50	1.00
6209941--6210013	37	2.0	37	86	5	103	42	0	9	47	1.36
6210051--6210483	73	6.0	70	75	10	288	38	9	5	46	1.58
6210480--6210511	15	2.1	16	94	5	57	53	0	6	40	1.26
6210518--6210576	21	2.9	21	79	2	66	54	1	0	44	1.10
6210541--6210574	9	3.7	9	88	7	50	58	2	0	38	1.13
6218059--6218103	13	3.7	13	82	14	60	62	0	0	37	0.96
6218245--6218294	26	1.9	26	84	8	66	54	4	12	30	1.55
6219066--6219101	13	2.8	12	88	12	54	2	13	0	83	0.76
6220796--6220825	10	3.1	10	95	4	53	63	0	0	36	0.95
6223757--6223806	20	2.5	20	93	6	84	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6225781--6226404	334	1.9	334	85	2	867	27	19	22	30	1.98
6232709--6232786	33	2.5	32	81	10	81	34	17	5	42	1.72
6233493--6233630	62	2.2	62	80	5	145	34	5	19	40	1.74
6234180--6234228	24	2.0	24	84	7	64	53	2	4	40	1.32
6238026--6238078	18	3.1	16	84	13	61	58	1	0	39	1.09
6239449--6239578	38	3.1	42	84	13	180	30	4	6	57	1.45
6241214--6241257	20	2.1	20	83	8	52	38	9	0	52	1.33
6241250--6241317	30	2.2	30	85	10	93	36	11	2	48	1.55
6243332--6243374	18	2.4	18	88	0	68	41	16	13	27	1.86
6246258--6246283	2	13.0	2	100	0	52	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77