genome.fa.s179.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  5  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
597801--597882	43	1.9	43	92	2	139	43	19	9	26	1.82
598221--598809	21	25.8	22	71	16	265	39	13	8	38	1.77
598308--598371	22	3.2	18	81	18	58	35	17	7	39	1.78
598243--598410	68	2.4	68	84	3	212	38	14	8	38	1.77
598219--598811	46	12.9	46	79	7	521	39	13	9	38	1.77
599198--599239	22	1.9	22	85	9	59	26	21	4	47	1.70
600069--600141	14	4.4	18	77	22	72	5	21	0	72	1.04
600069--600141	16	4.4	17	77	19	75	5	21	0	72	1.04
602922--602978	17	3.6	17	73	26	70	47	5	21	26	1.71
604627--604733	51	2.1	51	86	5	146	48	9	10	31	1.69
604612--604733	50	2.4	50	83	4	156	46	10	10	31	1.73
605025--605074	22	2.1	24	85	10	68	28	30	8	34	1.86
605641--605685	14	3.4	14	82	14	51	15	22	2	60	1.46
607790--607827	2	18.5	2	94	5	67	50	2	0	47	1.15
609174--609253	32	2.5	33	80	6	76	40	1	11	47	1.47
610065--610104	19	2.2	18	86	4	53	70	2	0	27	1.01
622212--622237	6	4.3	6	100	0	52	65	0	0	34	0.93
622476--622500	2	12.5	2	100	0	50	48	0	0	52	1.00
623425--623487	2	31.5	2	96	0	117	0	47	0	52	1.00
625786--625815	3	10.0	3	100	0	60	33	0	0	66	0.92
629204--629241	19	2.0	19	100	0	76	42	31	5	21	1.75
633306--633342	18	2.1	18	94	0	65	48	21	16	13	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
633739--633768	15	2.0	15	93	0	51	33	23	26	16	1.96
636578--636622	19	2.5	17	86	13	72	46	0	0	53	1.00
636578--636626	18	2.7	18	90	9	82	46	0	0	53	1.00
636595--636637	18	2.4	18	80	0	50	53	2	0	44	1.13
636617--636662	24	1.9	24	86	0	65	63	6	0	30	1.20
637450--638019	285	2.0	286	88	1	858	36	11	9	42	1.73
639709--639747	13	2.9	13	84	3	51	66	2	2	28	1.18
646671--646695	2	12.5	2	100	0	50	52	0	0	48	1.00
648763--648787	13	1.9	13	100	0	50	52	0	0	48	1.00
664455--664483	14	2.0	15	93	6	51	62	0	0	37	0.96
673387--673461	27	2.6	29	79	12	84	54	1	0	44	1.08
675867--675903	17	2.2	17	100	0	74	64	0	0	35	0.94
679235--679299	12	5.1	14	72	22	54	61	7	1	29	1.33
679215--679297	24	3.4	23	82	12	103	61	8	1	28	1.33
679222--679303	14	7.0	11	73	22	69	60	7	1	30	1.31
679330--679390	26	2.3	26	83	8	70	65	9	4	19	1.40
684964--684990	2	13.5	2	100	0	54	51	0	0	48	1.00
687404--687451	24	1.9	25	87	8	71	35	0	4	60	1.16
688077--688115	13	3.0	13	84	0	51	56	0	0	43	0.99
688701--688742	6	6.7	6	84	15	50	2	2	14	80	0.90
693086--693138	17	3.1	18	78	13	67	73	1	0	24	0.93
693089--693138	4	12.0	4	83	12	57	74	2	0	24	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
693089--693138	25	2.0	25	84	7	66	74	2	0	24	0.93
693614--693647	15	2.2	16	89	5	52	52	2	5	38	1.41
694039--694080	8	5.6	8	81	16	54	73	0	2	23	0.94
694050--694074	13	1.9	13	100	0	50	72	0	4	24	1.02
694329--694643	130	2.4	129	81	4	355	43	15	14	26	1.85
694307--694644	44	7.8	43	80	5	243	42	15	14	26	1.86
695254--695323	25	3.0	25	75	12	76	38	11	5	44	1.64
698683--698746	10	6.7	9	78	18	67	84	6	0	9	0.78
698683--698746	11	6.6	10	85	15	82	84	6	0	9	0.78
698691--698746	11	5.5	11	87	12	84	83	7	0	8	0.80
699775--700201	109	4.0	107	84	5	452	21	17	14	47	1.82
700049--700204	35	4.4	36	67	13	90	21	13	14	50	1.76
699915--700234	106	3.0	106	88	4	430	21	17	13	48	1.81
700296--700380	44	1.9	45	90	2	136	20	14	15	50	1.77
707508--707600	7	12.7	7	68	13	53	73	5	3	18	1.16
707508--707600	41	2.3	39	82	10	107	73	5	3	18	1.16
707548--707595	16	2.9	16	77	22	55	75	4	2	18	1.07
707777--707809	11	3.3	10	88	12	50	90	3	0	6	0.52
707775--707804	15	2.0	15	93	0	51	83	6	0	10	0.81
714190--714223	13	2.6	13	90	0	59	50	0	0	50	1.00
716618--716654	3	12.3	3	100	0	74	32	0	0	67	0.91
718901--718944	2	22.0	2	90	0	70	50	0	2	47	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
721560--722034	59	8.1	58	78	11	416	36	8	6	48	1.59
721673--721764	28	3.2	30	60	25	70	39	10	4	45	1.59
721560--722034	171	2.7	174	80	12	506	36	8	6	48	1.59
721835--722029	62	3.1	63	79	7	211	33	8	6	50	1.59
721722--722034	121	2.6	120	77	14	322	35	7	6	50	1.57
722105--722135	4	7.8	4	92	0	53	74	0	3	22	0.96
722564--722588	11	2.3	11	100	0	50	60	16	0	24	1.36
723138--723340	85	2.4	86	80	4	232	44	15	19	20	1.87
723374--723613	86	2.8	86	80	2	268	47	14	16	21	1.82
724454--724548	48	2.0	49	89	6	149	18	18	14	47	1.83
724453--724657	51	4.0	51	79	10	197	20	19	12	48	1.80
724593--724732	72	2.0	71	87	4	201	17	15	7	59	1.58
724651--724677	7	3.9	7	100	0	54	11	0	0	88	0.50
732394--732662	134	2.0	134	96	0	493	26	23	10	40	1.86
734899--735004	50	2.1	50	94	1	187	21	18	19	39	1.92
735486--736151	60	11.3	59	78	9	603	34	9	5	49	1.59
736175--736220	22	2.1	21	84	4	56	50	4	4	41	1.42
736241--736276	11	3.2	11	92	4	54	72	2	2	22	1.11
736999--737040	22	1.9	22	90	9	68	21	7	0	71	1.09
737919--737945	1	27.0	1	100	0	54	0	0	0	100	0.00
745310--745341	16	2.0	16	100	0	64	37	25	0	37	1.56
747342--747416	37	2.0	38	92	5	125	50	1	8	40	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
749994--750029	14	2.6	14	95	0	63	52	2	8	36	1.46
750182--750263	16	5.1	15	71	18	58	51	0	1	47	1.08
750189--750279	19	5.2	16	75	15	58	52	1	1	45	1.15
750291--750360	18	3.6	18	71	17	50	37	0	4	58	1.18
750307--750414	23	5.0	23	73	15	86	42	0	3	52	1.25
750306--750414	45	2.6	41	79	15	123	42	0	3	53	1.25
750330--750370	18	2.3	18	95	0	73	39	0	7	53	1.29
750379--750426	15	2.9	17	78	15	55	47	2	0	50	1.12
750372--750433	18	3.6	18	74	14	67	45	1	0	53	1.10
750347--750430	33	2.8	29	75	19	84	42	1	2	53	1.21
750480--750518	18	2.3	18	86	8	55	28	5	2	64	1.28
751141--751226	43	2.0	43	100	0	172	23	11	11	53	1.69
762482--762519	3	12.7	3	100	0	76	65	0	0	34	0.93
766680--766717	3	12.7	3	100	0	76	34	0	0	65	0.93
766998--767092	19	4.9	19	70	18	63	54	0	1	44	1.07
771211--771243	16	2.1	16	88	11	50	3	15	0	81	0.80
772382--772446	32	2.0	32	100	0	130	40	6	9	44	1.61
773345--773383	15	2.6	15	83	0	51	46	2	0	51	1.14
774225--774283	30	2.0	30	96	0	109	45	0	1	52	1.10
774233--774291	15	4.0	14	72	10	55	50	0	1	47	1.11
793915--793962	18	2.6	17	78	12	51	79	0	6	14	0.92
793915--793965	19	2.8	18	82	8	59	78	0	7	13	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
795074--795180	38	2.7	39	75	4	117	26	14	14	44	1.83
795155--795248	42	2.2	42	81	7	102	26	7	19	46	1.76
796955--796992	11	3.6	11	79	13	53	18	0	42	39	1.50
796953--796994	20	2.1	20	100	0	84	21	0	38	40	1.53
798719--798745	14	1.9	14	100	0	54	29	0	3	66	1.09
798573--798976	177	2.3	176	88	5	593	34	13	7	44	1.71
798571--798977	59	6.9	58	86	6	507	34	13	7	44	1.72
798998--799077	5	15.6	5	69	23	51	76	2	6	15	1.09
798997--799079	36	2.4	35	84	8	98	74	2	7	15	1.14
798998--799077	11	6.7	11	73	18	54	76	2	6	15	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77