genome.fa.s179.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  16  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2776879--2777018	3	47.0	3	89	1	75	50	0	15	33	1.44
2776879--2777020	9	15.9	9	84	1	106	50	0	16	33	1.45
2776880--2777015	6	22.8	6	87	1	94	50	0	16	33	1.45
2777136--2777202	3	22.3	3	100	0	134	65	0	0	34	0.93
2777855--2777901	26	1.9	23	83	12	58	65	2	14	17	1.36
2778705--2778747	21	2.1	20	82	4	50	48	16	18	16	1.81
2778908--2778937	3	10.0	3	92	0	51	30	0	3	66	1.07
2781205--2781246	9	4.7	9	79	8	50	85	11	0	2	0.68
2781192--2781244	26	2.0	26	85	7	72	81	13	1	3	0.92
2783925--2783972	25	1.9	25	83	8	62	10	6	2	81	0.95
2783941--2783972	15	2.3	15	89	10	50	3	6	3	87	0.73
2785003--2785047	15	2.9	15	87	6	63	73	0	0	26	0.84
2785005--2785047	16	2.8	16	89	3	61	76	0	0	23	0.78
2787487--2787517	16	1.9	16	100	0	62	38	0	6	54	1.26
2787590--2787634	9	5.8	8	76	23	51	73	0	0	26	0.84
2787591--2787633	16	2.8	16	92	3	70	72	0	0	27	0.85
2795439--2795489	25	2.0	25	85	14	70	19	19	1	58	1.48
2799923--2799956	15	2.2	16	89	5	52	23	8	20	47	1.78
2799813--2800036	49	4.6	49	82	0	250	30	11	16	40	1.85
2799889--2800090	98	2.1	98	83	3	255	30	11	18	38	1.87
2799813--2800071	49	5.3	49	79	4	227	32	10	16	40	1.83
2799813--2800090	147	1.9	148	79	6	314	31	11	17	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2800127--2800230	43	2.4	44	85	10	151	28	16	14	40	1.88
2800207--2800293	47	1.9	45	86	9	124	35	13	14	35	1.86
2800230--2800324	43	2.2	45	83	7	115	40	10	11	37	1.76
2801325--2801390	31	2.1	30	86	10	89	31	0	1	66	1.01
2801347--2801392	21	2.2	20	80	3	56	32	0	0	67	0.91
2801322--2801381	17	3.8	15	75	18	50	35	0	1	63	1.05
2801346--2801402	28	2.0	29	86	10	82	33	1	1	63	1.15
2804274--2804404	29	4.7	27	75	16	72	51	4	2	41	1.35
2804223--2804367	56	2.5	55	79	13	143	47	3	4	44	1.41
2804274--2804343	31	2.3	31	81	13	83	48	4	1	45	1.30
2804319--2804374	26	2.2	26	87	6	78	55	1	3	39	1.28
2804452--2804518	22	2.9	22	79	12	71	58	1	1	38	1.17
2810104--2810150	22	2.1	22	92	7	78	27	14	31	25	1.95
2814037--2814095	15	3.9	15	79	16	59	76	6	1	15	1.07
2826788--2826820	17	2.0	17	88	5	50	27	0	0	72	0.85
2827438--2827471	16	2.1	17	94	5	61	61	0	0	38	0.96
2828902--2828959	31	1.9	30	89	10	91	37	0	1	60	1.07
2828917--2828967	24	2.2	23	85	3	66	35	0	1	62	1.06
2828949--2828991	22	2.0	22	85	0	59	30	0	2	67	1.03
2833804--2833894	25	3.6	25	77	16	91	45	1	1	52	1.15
2833825--2833905	25	3.2	24	71	22	69	49	2	0	48	1.14
2836664--2836745	34	2.3	36	81	8	98	56	2	1	40	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2837035--2837145	42	2.7	39	74	14	100	48	0	3	46	1.25
2837106--2837164	29	1.9	29	86	10	82	49	1	1	47	1.21
2846675--2846713	14	2.6	14	80	11	51	61	0	0	38	0.96
2847240--2847296	3	18.7	3	96	3	105	66	0	0	33	0.92
2859712--2859755	22	2.0	22	86	8	63	61	0	0	38	0.96
2860907--2860953	16	3.1	15	76	11	51	53	0	0	46	1.00
2861660--2861696	3	12.3	3	100	0	74	32	0	0	67	0.91
2867111--2867319	102	2.0	102	97	0	391	33	17	12	35	1.88
2869097--2869362	135	2.0	135	90	3	419	24	20	11	43	1.85
2882798--2882823	2	13.0	2	100	0	52	50	0	0	50	1.00
2883032--2883058	2	13.5	2	100	0	54	51	0	0	48	1.00
2883128--2883162	17	2.0	18	88	5	54	48	0	0	51	1.00
2883929--2883978	21	2.3	23	70	16	54	40	2	6	52	1.38
2887323--2887356	16	2.1	16	89	10	52	82	0	14	2	0.79
2890182--2890229	24	2.0	25	87	4	71	47	10	2	39	1.49
2900814--2900850	15	2.5	15	95	4	67	24	5	29	40	1.77
2900979--2901078	36	2.8	35	88	7	139	32	5	17	46	1.69
2904919--2904953	14	2.3	16	90	9	56	0	37	0	62	0.95
2906668--2906765	31	3.1	30	85	7	124	16	18	11	54	1.71
2915037--2915162	58	2.2	58	82	4	148	39	8	8	42	1.67
2915045--2915560	54	9.4	54	78	7	454	34	7	6	50	1.58
2915080--2915560	109	4.4	108	80	6	470	34	7	7	51	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2915080--2915551	163	2.9	162	82	6	551	34	7	7	50	1.57
2921638--2921728	41	2.2	41	84	0	119	31	10	9	47	1.72
2922165--2922213	21	2.4	21	83	10	57	36	14	12	36	1.83
2930661--2930822	59	2.6	62	83	10	192	35	11	6	46	1.67
2930883--2930949	30	2.2	32	81	10	77	40	2	5	50	1.42
2930935--2931107	62	2.7	62	80	11	179	38	9	3	49	1.52
2930995--2931135	62	2.3	60	83	10	164	37	7	2	51	1.46
2932546--2932585	13	3.0	13	85	3	53	72	0	27	0	0.85
2937392--2937461	34	2.1	34	88	0	104	34	17	11	37	1.85
2938598--2938639	22	2.0	22	85	4	59	14	0	7	78	0.95
2941690--2941730	20	2.3	18	80	19	50	63	0	0	36	0.95
2941787--2941820	13	2.6	13	85	0	50	47	0	0	52	1.00
2944288--2944322	18	1.9	18	94	0	61	20	0	25	54	1.45
2944282--2944328	24	2.0	24	86	0	67	23	0	23	53	1.47
2945505--2945538	2	17.0	2	87	0	50	50	5	0	44	1.26
2945692--2945729	19	2.1	19	95	5	69	50	10	10	28	1.70
2951877--2951918	22	1.9	22	90	0	66	33	11	9	45	1.73
2963542--2964034	54	9.1	54	77	9	407	33	7	7	51	1.58
2974337--2974417	41	2.0	41	85	9	112	35	11	9	43	1.74
2976974--2977249	139	2.0	138	86	4	385	28	29	9	32	1.89
2983491--2983741	120	2.1	120	82	7	296	35	10	4	49	1.57
2984996--2985036	18	2.3	17	84	12	55	68	0	31	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2988877--2988915	18	2.2	18	86	9	53	41	2	2	53	1.28
2991070--2991124	28	2.0	27	82	3	65	18	0	5	76	0.97
2994161--2994201	20	2.3	18	80	19	50	63	0	0	36	0.95
2994259--2994292	13	2.6	13	85	0	50	47	0	0	52	1.00
2994658--2994699	2	21.0	2	85	0	57	42	0	7	50	1.30
2994658--2994699	14	3.0	14	92	0	66	42	0	7	50	1.30
2996194--2996249	15	3.4	15	70	29	51	33	1	12	51	1.50
2996762--2996796	18	1.9	18	94	0	61	20	0	25	54	1.45
2996756--2996802	24	2.0	24	86	0	67	23	0	23	53	1.47
2996754--2996804	26	2.0	26	84	0	66	23	0	23	52	1.47
2998030--2998067	2	19.0	2	88	0	58	50	5	0	44	1.24
2998221--2998262	21	2.0	21	100	0	84	47	9	9	33	1.68
3004410--3004451	22	1.9	22	90	0	66	33	11	9	45	1.73
3008368--3008409	22	1.9	22	85	9	59	33	9	9	47	1.68
3011751--3011794	22	2.0	22	95	0	79	31	11	13	43	1.80
3013304--3013366	27	2.2	29	86	13	103	50	11	7	30	1.66
3013312--3013366	27	2.0	27	100	0	110	50	10	7	30	1.64
3017001--3017040	19	2.1	19	100	0	80	42	12	15	30	1.83
3023523--3023582	21	2.8	21	74	23	54	38	3	0	58	1.15
3023981--3024020	19	2.2	18	86	4	53	47	2	2	47	1.29
3024160--3024252	31	3.0	31	85	0	114	43	13	3	39	1.61
3025220--3025265	21	2.3	20	80	20	53	52	0	2	45	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3025171--3025280	49	2.2	52	80	11	122	52	0	2	43	1.21
3031010--3031053	22	2.0	22	95	0	79	31	11	13	43	1.80
3043197--3043236	19	2.2	18	86	4	53	47	2	2	47	1.29
3043370--3043466	31	3.2	31	86	1	124	44	11	3	41	1.56
3045924--3045987	30	2.1	30	94	0	110	42	1	15	40	1.57
3047007--3047041	17	1.9	19	88	11	56	42	8	2	45	1.49
3048623--3048669	20	2.4	20	85	3	69	46	21	10	21	1.81
3048881--3048936	24	2.3	23	79	11	67	5	39	12	42	1.65
3049415--3049808	144	2.7	144	82	6	506	44	11	12	30	1.79
3050404--3050462	22	2.7	22	83	0	73	35	11	18	33	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77