genome.fa.s179.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  25  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4887794--4888041	10	24.5	10	67	13	96	59	5	2	33	1.32
4888009--4888047	19	2.1	19	90	4	62	51	7	0	41	1.31
4888015--4888058	19	2.2	19	92	8	70	43	9	0	47	1.35
4888071--4888215	20	7.2	20	72	11	100	37	0	6	55	1.25
4888072--4888246	41	4.3	42	72	18	129	37	0	5	56	1.27
4888068--4888215	40	3.7	40	72	17	119	37	0	6	56	1.24
4888186--4888245	11	5.5	11	74	9	52	35	1	5	58	1.30
4888068--4888243	21	8.6	21	68	17	75	37	0	5	56	1.28
4892023--4892076	24	2.3	23	93	6	99	37	9	0	53	1.33
4893984--4894030	3	15.7	3	95	0	85	63	0	2	34	1.06
4895996--4896080	30	2.8	30	79	10	93	35	8	3	52	1.48
4897645--4897686	20	2.2	18	87	8	57	73	0	14	11	1.09
4897661--4897715	9	6.7	9	75	23	50	72	0	12	14	1.12
4897661--4897715	24	2.2	26	84	12	80	72	0	12	14	1.12
4897667--4897708	7	5.7	7	84	15	50	73	0	11	14	1.09
4897661--4897708	15	3.1	15	81	18	55	72	0	12	14	1.11
4898349--4898554	48	4.4	45	79	13	179	32	15	10	41	1.81
4898320--4898552	47	4.9	46	79	10	215	31	15	11	41	1.83
4898320--4898555	95	2.5	93	80	10	255	32	15	11	40	1.83
4898799--4898837	19	2.0	20	85	5	53	48	17	12	20	1.80
4900884--4900936	7	8.3	6	82	14	54	41	35	0	22	1.54
4900973--4900997	12	2.1	12	100	0	50	44	40	0	16	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4900969--4901033	19	3.4	19	71	12	53	40	35	3	21	1.69
4901078--4901126	26	1.9	26	83	4	64	46	34	0	18	1.49
4903939--4903963	2	12.5	2	100	0	50	48	0	0	52	1.00
4906089--4906167	24	3.1	24	76	10	70	51	0	11	36	1.38
4906100--4906295	75	2.6	74	82	2	221	50	5	9	35	1.57
4906580--4906614	16	2.2	16	94	0	61	31	8	17	42	1.79
4912833--4912882	25	2.0	25	84	7	66	42	38	6	14	1.70
4912871--4913118	80	3.1	79	82	2	291	43	22	8	25	1.80
4912992--4913028	18	2.1	18	89	0	56	51	21	2	24	1.61
4915941--4915984	21	2.1	21	82	0	52	43	13	29	13	1.83
4916569--4916890	134	2.4	134	84	1	403	39	17	13	30	1.88
4916768--4916853	33	2.6	33	75	17	88	40	15	15	29	1.87
4924179--4924289	37	3.0	37	85	1	143	39	7	18	35	1.78
4926444--4926531	27	3.3	27	79	9	99	22	4	34	38	1.75
4926473--4926554	13	6.8	13	65	16	50	19	3	34	42	1.69
4926468--4926695	6	34.8	6	71	14	98	18	1	31	48	1.57
4926612--4926687	13	5.8	12	75	12	53	21	0	28	50	1.49
4926519--4926687	65	2.6	65	80	4	189	17	0	31	50	1.51
4927184--4927220	16	2.3	16	90	0	65	27	18	10	43	1.83
4930921--4930953	16	2.0	17	94	5	59	72	3	0	24	0.98
4931240--4931278	8	4.8	8	84	6	51	33	0	2	64	1.08
4933185--4933242	29	2.0	28	83	9	73	53	3	3	39	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4933732--4933771	21	1.9	21	89	0	62	77	2	5	15	1.04
4933732--4933782	21	2.4	21	83	3	57	76	1	3	17	1.03
4933836--4933885	22	2.3	22	86	6	66	84	2	6	8	0.86
4933836--4933888	7	7.3	7	79	8	52	83	1	7	7	0.89
4934767--4934811	11	4.1	11	77	11	56	44	0	0	55	0.99
4935365--4935421	29	1.9	30	89	3	89	54	7	8	29	1.58
4937250--4937285	18	2.0	18	88	0	54	36	0	27	36	1.57
4946472--4946551	30	2.6	30	82	2	88	37	11	1	50	1.46
4946614--4946664	3	17.0	3	100	0	102	33	0	0	66	0.92
4946961--4947015	26	2.1	25	80	6	65	25	3	3	67	1.23
4947367--4947429	20	3.0	20	74	26	67	50	4	6	38	1.49
4947518--4947614	30	3.2	30	75	16	85	54	0	5	40	1.23
4955814--4955870	27	2.2	26	87	3	78	61	0	1	36	1.07
4955823--4955862	17	2.5	16	84	8	55	65	0	2	32	1.06
4955824--4955867	22	2.0	23	90	4	72	63	0	2	34	1.07
4961425--4961761	66	5.2	65	76	6	227	46	9	21	22	1.80
4961486--4961759	64	4.2	64	76	6	212	47	9	20	23	1.79
4961892--4961961	27	2.6	26	70	17	61	48	14	10	27	1.75
4961947--4961979	17	1.9	17	93	0	57	51	18	12	18	1.76
4962032--4962107	17	4.5	17	80	3	73	32	14	13	39	1.85
4962032--4962107	34	2.2	34	83	0	89	32	14	13	39	1.85
4962327--4962418	44	2.1	45	83	6	116	47	9	7	34	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4962542--4962672	45	2.9	45	77	6	140	43	12	8	35	1.72
4966478--4966526	21	2.3	21	82	6	64	69	10	2	18	1.27
4969980--4970005	13	2.0	13	100	0	52	30	0	23	46	1.53
4977376--4977570	97	2.0	97	87	0	282	24	5	32	37	1.79
4980131--4980188	29	2.0	29	93	0	98	27	20	17	34	1.95
4981907--4981940	8	4.2	8	88	0	50	55	0	2	41	1.15
4985801--4985827	12	2.2	12	100	0	54	37	0	29	33	1.58
4992096--4992175	36	2.2	36	80	2	90	27	17	16	38	1.91
4992181--4992246	33	2.0	33	82	5	80	28	10	21	39	1.86
4992296--4992471	36	5.0	35	77	6	140	30	15	15	38	1.89
4992543--4992587	12	4.0	11	80	13	56	86	4	8	0	0.69
4993587--4993631	6	7.7	6	81	18	51	15	2	0	82	0.77
4993586--4993639	5	11.0	5	77	15	51	16	1	1	79	0.91
4993601--4993631	16	1.9	16	93	0	53	16	3	0	80	0.83
4993586--4993630	11	4.5	11	76	18	53	17	2	0	80	0.82
4993586--4993639	19	3.0	18	76	15	58	16	1	1	79	0.91
4994708--4994764	28	2.0	28	83	6	71	33	1	7	57	1.36
4994728--4994763	17	2.1	17	89	0	54	38	0	2	58	1.13
4995760--4995822	30	2.1	30	87	0	90	33	9	17	39	1.82
4997749--4997796	2	24.5	2	82	4	62	50	4	2	43	1.33
4998564--4998611	3	16.0	3	100	0	96	66	0	0	33	0.92
4999289--4999345	17	3.7	16	77	13	57	24	5	1	68	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5000607--5000637	2	16.0	2	93	6	55	48	0	0	51	1.00
5004319--5004395	15	4.9	15	72	20	52	37	2	3	55	1.32
5004958--5004985	4	7.0	4	100	0	56	25	0	0	75	0.81
5005311--5005386	30	2.6	30	81	4	93	59	0	0	40	0.98
5006564--5006598	16	2.3	15	90	5	52	31	0	0	68	0.90
5007624--5007653	7	4.4	7	91	8	53	76	0	0	23	0.78
5007618--5007657	20	2.0	20	90	4	64	75	0	2	22	0.93
5009712--5009813	51	2.0	51	96	0	186	37	13	17	31	1.89
5013022--5013077	24	2.5	21	74	23	60	30	1	1	66	1.12
5013022--5013081	22	2.7	23	73	19	63	31	1	1	65	1.13
5018717--5019092	136	2.8	136	86	4	506	44	17	10	26	1.81
5019056--5019184	42	3.1	42	85	2	152	39	21	10	27	1.87
5019468--5019558	38	2.4	38	92	0	146	38	10	13	37	1.80
5019611--5019704	46	2.0	46	83	0	116	43	17	6	32	1.74
5021297--5021328	15	2.1	15	94	0	55	9	6	0	84	0.78
5022619--5022644	13	2.0	13	100	0	52	69	0	0	30	0.89
5023345--5023380	18	1.9	19	88	5	56	16	13	0	69	1.19
5023411--5023446	12	2.8	13	91	4	56	69	11	0	19	1.18
5025556--5025632	21	3.7	21	73	3	75	61	0	3	35	1.15
5025749--5025790	18	2.3	19	84	8	52	52	0	0	47	1.00
5032533--5032677	9	15.2	9	68	17	53	37	1	8	52	1.40
5032599--5032648	20	2.6	19	77	3	55	38	2	6	54	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5036872--5036912	2	20.5	2	100	0	82	48	0	0	51	1.00
5038319--5038367	26	1.9	26	83	4	64	34	6	12	46	1.66
5040154--5040179	2	13.0	2	100	0	52	50	0	0	50	1.00
5040259--5040311	16	3.2	16	82	12	63	45	0	1	52	1.11
5040525--5040584	24	2.7	21	72	22	50	53	0	0	46	1.00
5046542--5046622	41	2.0	41	95	0	144	23	14	20	40	1.90
5049656--5049886	115	2.0	115	99	0	453	42	13	11	32	1.80
5054300--5054361	29	2.1	30	84	3	81	62	1	9	25	1.35
5064157--5064196	19	2.1	19	86	9	55	27	2	0	70	1.01
5065693--5065734	19	2.2	19	86	0	57	71	2	0	26	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77