genome.fa.s179.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  28  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5435350--5435401	25	2.1	25	92	0	86	42	25	0	32	1.55
5435350--5435422	25	2.9	25	85	4	76	42	23	0	34	1.54
5438642--5438779	43	3.2	43	90	3	217	36	21	16	24	1.94
5439792--5439903	15	7.1	16	87	10	133	13	9	0	76	1.01
5439792--5439903	23	4.8	24	88	7	133	13	9	0	76	1.01
5439792--5439903	8	14.2	8	87	9	133	13	9	0	76	1.01
5457058--5457087	2	15.0	2	100	0	60	50	0	50	0	1.00
5459687--5459730	18	2.4	18	76	0	52	36	11	11	40	1.77
5464603--5464667	25	2.6	25	87	0	94	35	33	1	29	1.67
5464658--5464709	25	2.1	25	92	0	86	42	25	0	32	1.55
5464658--5464730	25	2.9	25	85	4	76	42	23	0	34	1.54
5467708--5467745	20	1.9	20	88	0	58	81	2	10	5	0.94
5467881--5468004	40	3.0	41	86	8	178	35	23	16	24	1.95
5467881--5468018	44	3.2	42	87	9	192	35	23	16	24	1.95
5469031--5469110	7	11.3	7	80	12	76	12	13	0	73	1.09
5469049--5469139	14	6.4	14	82	12	89	15	8	0	75	1.03
5469036--5469139	8	13.8	8	81	14	98	14	9	0	75	1.03
5469036--5469119	37	2.3	36	88	10	118	13	10	0	76	1.03
5469041--5469137	20	5.2	19	73	14	78	14	8	0	77	0.99
5473466--5473574	20	4.9	20	69	25	62	74	4	1	19	1.09
5473526--5473579	16	3.8	14	77	20	51	83	1	1	12	0.81
5473529--5473579	12	4.2	12	84	0	66	84	1	1	11	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5473884--5473927	19	2.3	19	96	0	79	29	22	22	25	1.99
5474811--5474842	16	2.1	15	94	5	55	43	0	0	56	0.99
5475198--5475227	15	2.1	15	93	6	53	50	0	6	43	1.28
5476361--5476417	17	3.2	18	80	11	64	59	3	0	36	1.14
5476411--5476468	22	2.6	22	86	7	82	56	5	1	36	1.32
5476324--5476482	17	8.9	17	65	27	57	57	3	1	37	1.25
5476456--5476507	23	2.3	23	80	6	61	57	1	0	40	1.10
5476524--5476588	24	2.6	25	87	4	87	46	1	4	47	1.32
5478375--5478420	9	5.1	9	94	0	83	45	2	8	43	1.47
5479007--5479055	22	2.2	22	85	7	64	46	2	4	46	1.33
5482310--5482358	13	3.8	12	79	12	53	63	2	4	30	1.24
5484961--5484998	15	2.5	15	87	12	51	60	0	2	36	1.11
5488930--5488957	2	14.0	2	100	0	56	50	0	0	50	1.00
5489114--5489144	3	10.3	3	100	0	62	32	32	0	35	1.58
5490706--5490932	123	1.8	123	98	0	436	40	10	16	32	1.82
5491707--5491776	22	3.1	22	78	10	70	54	4	0	41	1.20
5493738--5493800	20	2.9	21	84	15	92	39	3	1	55	1.25
5494081--5494135	27	2.0	26	83	13	67	50	3	1	43	1.30
5495220--5495249	14	2.1	14	100	0	60	46	0	0	53	1.00
5495412--5495446	17	2.1	17	89	5	54	51	2	0	45	1.16
5497579--5497605	14	1.9	14	100	0	54	37	0	0	62	0.95
5497575--5497743	60	2.8	60	81	7	177	40	7	1	51	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5504541--5504592	16	3.2	16	76	17	54	26	0	5	67	1.13
5504969--5505006	19	2.0	20	84	5	51	57	2	0	39	1.12
5506459--5506484	10	2.6	10	100	0	52	84	0	0	15	0.62
5507497--5507547	16	3.2	16	76	23	54	27	0	5	66	1.14
5507924--5507961	19	2.0	20	84	5	51	57	2	0	39	1.12
5508114--5508162	23	2.3	21	83	16	66	24	2	10	63	1.37
5509415--5509440	10	2.6	10	100	0	52	84	0	0	15	0.62
5512526--5512563	19	2.0	20	85	10	53	42	5	0	52	1.24
5514293--5514329	2	18.5	2	100	0	74	48	0	0	51	1.00
5516490--5516519	15	1.9	16	93	6	53	70	6	0	23	1.11
5517053--5517093	21	2.0	21	85	0	55	39	14	12	34	1.84
5519286--5519333	21	2.2	21	92	7	78	50	0	0	50	1.00
5520345--5520515	83	2.1	83	97	1	326	43	5	0	50	1.26
5524819--5524855	19	2.0	19	89	5	58	18	8	0	72	1.08
5524963--5525006	24	1.9	24	86	9	65	45	9	6	38	1.63
5530004--5530028	11	2.3	11	100	0	50	24	0	16	60	1.36
5530649--5530996	191	1.8	191	80	8	422	46	7	9	36	1.64
5534927--5534968	22	1.9	22	90	9	68	69	2	21	7	1.25
5534971--5535004	10	3.5	10	92	4	52	88	0	11	0	0.52
5534971--5535004	9	3.7	9	88	7	50	88	0	11	0	0.52
5536184--5536241	24	2.4	24	85	0	80	48	10	12	29	1.73
5536832--5536920	44	2.0	44	84	2	117	21	14	22	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5543059--5543184	22	5.8	22	77	9	116	38	4	7	50	1.51
5543059--5543184	43	2.9	44	82	5	132	38	4	7	50	1.51
5543320--5543427	40	2.5	42	78	11	105	35	6	4	53	1.47
5543522--5543597	22	3.5	21	72	16	66	36	6	6	50	1.55
5543667--5543735	19	3.3	19	67	27	50	42	13	0	44	1.43
5543667--5543762	22	4.5	22	77	16	94	41	12	0	45	1.42
5543667--5543762	44	2.2	42	88	3	138	41	12	0	45	1.42
5543695--5543762	21	3.2	21	74	17	68	42	11	0	45	1.40
5543787--5543840	22	2.5	22	87	0	72	42	11	0	46	1.39
5544039--5544083	14	3.3	14	72	27	51	35	6	0	57	1.25
5545096--5545161	22	3.0	22	80	8	55	48	3	1	46	1.26
5545214--5545249	17	2.1	18	89	5	56	61	5	5	27	1.41
5546926--5546994	34	2.0	34	94	0	120	11	13	7	68	1.40
5547086--5547124	10	3.8	10	83	6	51	84	2	10	2	0.81
5556225--5556257	16	2.1	16	94	0	57	39	6	18	36	1.75
5559537--5559569	2	17.5	2	87	12	52	45	0	0	54	0.99
5562559--5562585	11	2.5	11	100	0	54	85	0	0	14	0.61
5568638--5568664	2	13.5	2	100	0	54	48	0	0	51	1.00
5571603--5571631	3	9.7	3	100	0	58	68	0	0	31	0.89
5572583--5572641	14	4.1	14	70	20	50	22	11	15	50	1.76
5574162--5574208	14	3.6	13	83	8	60	80	2	0	17	0.80
5575103--5575207	28	3.8	28	89	5	151	22	0	29	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5579463--5579560	28	3.5	28	87	2	135	24	2	28	44	1.65
5581563--5581621	14	4.1	14	75	12	66	23	8	15	52	1.70
5595807--5595884	24	3.4	21	76	19	75	39	20	28	11	1.87
5595812--5595879	24	2.8	24	93	0	118	39	20	27	11	1.88
5595896--5595934	8	4.9	8	100	0	78	0	10	0	89	0.48
5609256--5609795	267	2.0	267	97	0	1008	33	21	14	30	1.93
5616929--5616982	28	1.9	28	92	0	90	38	9	22	29	1.85
5617632--5617657	13	2.0	13	100	0	52	30	7	15	46	1.74
5619572--5619631	24	2.4	25	76	15	63	20	3	1	75	1.04
5624632--5624670	13	3.0	13	88	0	51	69	2	25	2	1.14
5629747--5629776	2	15.5	2	93	6	53	0	50	0	50	1.00
5629827--5629853	2	13.5	2	100	0	54	48	0	0	51	1.00
5632428--5632456	2	14.5	2	100	0	58	51	0	48	0	1.00
5635371--5635405	18	1.9	19	88	11	56	45	0	5	48	1.26
5638204--5638238	11	3.1	11	91	4	52	48	0	0	51	1.00
5638578--5638636	27	2.2	26	84	3	73	33	0	3	62	1.12
5638586--5638718	30	4.7	29	75	13	100	39	4	3	51	1.40
5642169--5642213	18	2.5	17	82	10	54	40	11	11	37	1.76
5642482--5642583	30	3.4	30	76	0	96	41	5	2	50	1.42
5646529--5646728	24	7.1	27	69	20	115	18	4	47	30	1.68
5646529--5646771	30	8.3	30	72	12	139	17	3	48	30	1.64
5646514--5646603	39	2.3	39	88	3	128	22	4	41	32	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5646644--5646686	21	2.0	21	86	0	59	13	6	48	30	1.69
5646658--5646725	21	3.1	21	80	12	73	13	4	52	29	1.59
5646689--5646840	3	51.3	3	76	7	96	9	0	55	34	1.36
5646571--5646731	27	6.1	27	76	11	129	16	4	49	29	1.65
5646665--5646840	24	7.0	24	72	11	95	10	1	55	33	1.41
5668070--5668126	26	2.2	26	100	0	114	31	10	21	36	1.87
5673108--5673203	32	3.0	32	90	0	147	25	16	34	23	1.95
5677550--5677588	21	1.9	20	85	15	53	53	0	2	43	1.14
5679574--5679601	14	2.0	14	100	0	56	21	21	14	42	1.88
5679684--5679744	15	3.9	15	72	17	52	52	4	1	40	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77