genome.fa.s179.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  59  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11802847--11802936	34	2.6	34	83	0	108	43	10	5	41	1.61
11802854--11802984	34	3.9	34	77	0	100	44	9	5	40	1.61
11803260--11803294	16	2.3	15	90	5	52	45	2	0	51	1.16
11803546--11803570	12	2.1	12	100	0	50	64	0	8	28	1.22
11803917--11803973	23	2.5	21	78	15	60	78	8	0	12	0.95
11803938--11803962	9	2.8	9	100	0	50	80	8	0	12	0.92
11804895--11804945	12	4.3	12	88	9	70	25	0	1	72	0.95
11804907--11804938	15	2.3	15	89	10	50	21	0	0	78	0.76
11805606--11805659	27	2.1	25	82	6	63	57	3	1	37	1.27
11808876--11808952	33	2.3	31	75	14	73	48	11	22	18	1.80
11816467--11816513	23	2.0	23	100	0	94	17	17	12	53	1.73
11817136--11817653	40	13.1	40	71	11	282	25	12	19	42	1.86
11817136--11817669	79	6.8	78	88	1	701	25	12	19	42	1.86
11817658--11817793	48	2.8	49	86	5	188	28	13	19	38	1.90
11817885--11817920	2	18.0	2	94	0	63	47	2	0	50	1.15
11818074--11818157	25	3.5	24	79	11	91	78	8	0	13	0.96
11818123--11818147	13	1.9	13	100	0	50	88	12	0	0	0.53
11819399--11819473	32	2.4	29	76	8	78	58	2	1	37	1.20
11820431--11820502	36	2.0	36	94	0	126	27	11	8	52	1.65
11820730--11820760	14	2.1	15	94	5	55	51	3	0	45	1.17
11820728--11820764	8	4.8	8	83	16	51	48	2	0	48	1.15
11821218--11821244	14	1.9	14	100	0	54	37	7	18	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11822274--11822326	28	1.9	27	84	3	70	35	15	22	26	1.93
11825835--11825863	12	2.5	12	94	5	51	10	0	0	89	0.48
11826006--11826318	168	1.9	168	93	0	511	23	26	14	34	1.94
11826299--11826337	19	2.1	19	95	0	69	20	41	5	33	1.74
11826131--11826505	187	2.0	187	93	0	642	24	28	13	33	1.93
11826318--11826936	168	3.7	168	93	1	956	23	27	15	32	1.95
11826006--11826949	355	2.8	335	88	5	1311	24	27	15	33	1.95
11828076--11828108	17	1.9	17	93	0	57	24	24	3	48	1.65
11827991--11828192	101	2.0	102	92	0	334	18	24	11	45	1.83
11828186--11828234	25	2.0	25	91	0	80	36	18	12	32	1.88
11828376--11828448	34	2.1	34	85	5	94	46	6	5	41	1.54
11829004--11829033	2	15.0	2	100	0	60	50	0	0	50	1.00
11831318--11831430	33	3.4	33	77	7	102	42	1	6	49	1.38
11831317--11831464	34	4.4	33	80	8	138	41	2	6	49	1.41
11831339--11831464	67	1.9	67	81	3	155	45	2	5	46	1.39
11833543--11833578	17	2.1	17	89	0	54	50	5	0	44	1.25
11833801--11833849	23	2.1	23	100	0	98	40	12	0	46	1.41
11836535--11836611	31	2.6	30	85	6	102	48	1	2	48	1.23
11836536--11836594	26	2.3	26	82	5	75	49	1	1	47	1.21
11836632--11836682	23	2.2	23	82	0	57	39	1	0	58	1.09
11838707--11838745	18	2.2	18	85	0	51	58	2	35	2	1.25
11840892--11840928	18	2.1	18	100	0	74	45	21	16	16	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11841265--11841294	14	2.1	14	93	6	51	63	0	6	30	1.20
11841432--11841479	22	2.0	25	84	11	66	25	8	12	54	1.65
11841874--11841950	38	2.0	39	89	2	120	27	0	15	57	1.39
11842806--11842958	55	2.8	55	96	1	279	25	18	17	38	1.92
11845831--11845899	33	2.1	33	97	0	129	40	7	30	21	1.80
11852445--11852479	3	11.7	3	100	0	70	31	0	0	68	0.90
11853471--11853737	140	1.9	138	87	6	396	32	17	18	31	1.94
11853798--11854099	151	2.0	150	85	4	412	27	14	20	37	1.92
11858379--11858429	23	2.3	23	82	3	68	43	0	0	56	0.99
11859746--11859784	17	2.4	17	83	8	55	5	7	0	87	0.68
11860762--11860954	104	1.9	100	93	6	334	36	11	13	38	1.81
11867144--11867177	1	34.0	1	87	0	50	0	0	5	94	0.32
11869850--11869893	23	1.9	23	81	9	54	38	0	6	54	1.27
11869873--11869927	28	1.9	29	85	3	76	38	0	7	54	1.28
11869863--11869927	29	2.2	28	79	12	69	33	0	7	58	1.27
11870356--11870407	20	2.5	20	87	3	77	42	11	3	42	1.59
11873946--11873984	1	39.0	1	100	0	78	100	0	0	0	0.00
11874973--11875013	11	3.9	11	78	12	50	2	14	2	80	0.92
11874975--11875013	20	1.9	21	84	5	53	2	12	2	82	0.89
11882938--11882980	22	2.0	22	85	0	59	34	11	6	46	1.67
11887693--11887741	24	2.0	24	100	0	98	51	12	20	16	1.76
11891528--11891561	18	1.9	18	88	5	52	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11901969--11901994	9	2.9	9	100	0	52	0	19	0	80	0.71
11926563--11926608	14	3.1	14	82	17	58	56	0	0	43	0.99
11926540--11926582	18	2.3	18	88	4	59	69	0	0	30	0.88
11926546--11926608	32	2.0	30	82	11	74	61	0	0	38	0.96
11928091--11928142	11	4.5	11	81	9	68	26	1	0	71	0.97
11928091--11928169	35	2.2	35	82	6	88	32	2	1	63	1.16
11929355--11929393	20	1.9	20	89	5	60	46	2	2	48	1.29
11929357--11929414	28	2.1	27	84	6	73	46	3	1	48	1.29
11929427--11929477	21	2.4	21	84	12	61	13	0	9	76	1.02
11929427--11929475	20	2.5	20	83	12	57	14	0	10	75	1.04
11930017--11930051	18	1.9	18	88	0	52	60	0	0	40	0.97
11934448--11934477	2	15.0	2	100	0	60	50	0	0	50	1.00
11937466--11937524	29	2.2	26	82	11	66	45	3	1	49	1.28
11940704--11940775	30	2.4	30	77	11	76	62	4	8	25	1.41
11941723--11941769	24	1.9	25	87	12	71	61	0	6	31	1.21
11944189--11944291	52	2.0	53	88	1	154	27	11	5	55	1.58
11945012--11945056	17	2.6	17	86	6	56	2	40	0	57	1.11
11946253--11946298	5	9.2	5	85	0	65	63	0	36	0	0.95
11954693--11954741	15	3.1	15	82	5	53	55	6	0	38	1.25
11954781--11954824	2	22.0	2	100	0	88	50	0	0	50	1.00
11955707--11955753	19	2.5	20	86	6	62	44	0	0	55	0.99
11956583--11956626	12	3.6	12	78	6	52	52	0	2	45	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11956583--11956625	13	3.5	13	81	9	54	51	0	2	46	1.13
11965363--11965402	21	1.9	21	85	10	55	52	2	2	42	1.28
11975618--11975679	22	2.7	22	76	14	63	41	1	3	53	1.27
11987289--11987358	23	3.1	21	76	13	68	58	0	2	38	1.13
11987294--11987366	22	3.3	21	77	11	65	61	2	2	32	1.24
11995949--11995984	3	12.0	3	100	0	72	33	0	0	66	0.92
11996933--11996970	17	2.2	17	86	9	51	23	2	0	73	0.95
11997267--11997308	20	2.2	19	86	4	57	38	0	0	61	0.96
11998040--11998072	5	6.6	5	100	0	66	18	0	0	81	0.68
11998110--11998155	20	2.3	20	80	0	56	6	10	2	80	0.98
11998174--11998206	13	2.6	13	90	4	50	48	0	0	51	1.00
11998706--11998736	16	1.9	16	93	0	53	12	6	0	80	0.89
11999087--11999129	1	43.0	1	100	0	86	100	0	0	0	0.00
12007066--12007111	15	2.8	17	77	12	51	36	0	2	60	1.09
12007526--12007557	2	16.0	2	100	0	64	50	0	0	50	1.00
12007559--12007610	20	2.7	20	87	3	79	26	0	0	73	0.84
12007529--12007613	8	9.7	9	78	14	54	34	0	1	64	1.01
12007569--12007632	25	2.5	25	82	7	67	32	0	0	67	0.91
12007645--12007705	32	1.9	32	83	6	79	59	6	1	32	1.33
12008456--12008502	24	2.0	24	82	0	58	48	4	2	44	1.34
12008492--12008529	19	2.0	20	94	5	69	50	0	0	50	1.00
12008705--12008731	6	4.5	6	100	0	54	66	14	0	18	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12021086--12021139	27	2.0	28	89	10	85	29	1	5	62	1.28
12021781--12021830	20	2.6	20	87	12	70	30	0	0	70	0.88
12023955--12023994	2	20.0	2	84	0	53	45	2	2	50	1.28
12030704--12030783	34	2.4	33	80	4	88	47	8	1	42	1.42
12035072--12035112	2	19.5	2	90	9	64	46	4	0	48	1.23
12037934--12037981	18	2.6	19	77	12	55	68	16	0	14	1.21
12046326--12046365	12	3.3	12	78	0	53	57	0	0	42	0.98
12046328--12046379	24	2.2	24	93	6	88	57	0	0	42	0.98
12057617--12057775	23	7.7	21	69	23	81	54	2	1	41	1.22
12057618--12057766	44	3.5	42	73	20	128	54	2	1	41	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77