genome.fa.s179.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  58  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11547754--11548334	42	14.0	41	83	5	551	38	20	15	25	1.92
11550035--11550072	13	2.8	13	81	18	51	7	18	0	73	1.06
11550021--11550072	14	3.6	14	80	17	54	5	17	0	76	0.97
11554038--11554501	59	7.8	59	79	5	486	38	12	6	42	1.68
11554036--11554486	121	3.8	121	85	4	522	38	12	6	42	1.70
11554092--11554486	180	2.2	180	93	1	675	38	12	6	42	1.69
11554514--11554590	10	7.9	10	70	27	51	76	1	1	20	0.93
11554550--11554583	4	8.8	4	93	6	61	76	0	0	23	0.79
11554514--11554593	12	6.5	12	71	22	51	76	1	1	21	0.93
11554927--11554962	18	1.9	19	88	5	56	0	16	19	63	1.30
11555151--11555189	20	1.9	21	85	15	55	69	2	7	20	1.26
11555148--11555256	24	4.4	24	72	15	62	68	1	6	22	1.22
11555264--11555294	6	5.0	6	96	4	53	80	0	0	19	0.71
11555639--11555743	52	2.0	52	81	0	120	27	20	6	44	1.76
11565109--11565283	22	8.0	22	70	16	80	48	5	8	38	1.55
11565175--11565245	21	3.3	21	76	3	70	49	7	7	36	1.57
11565798--11566393	22	27.2	22	66	15	137	49	6	9	34	1.61
11565856--11565983	11	11.5	11	67	15	59	52	3	6	38	1.43
11566395--11566454	22	2.7	24	85	12	83	36	3	8	51	1.49
11574454--11574518	18	3.7	18	70	12	55	58	1	4	35	1.28
11574447--11574551	25	4.1	25	75	3	84	60	3	2	33	1.30
11574530--11574573	21	2.1	21	87	8	63	75	2	2	20	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11574522--11574601	39	2.1	39	83	6	101	67	3	5	23	1.27
11574669--11574727	20	2.9	21	78	16	70	47	5	1	45	1.34
11574825--11574863	9	4.0	9	84	15	51	41	0	2	56	1.13
11574825--11574865	11	4.1	10	87	12	50	41	0	2	56	1.13
11575005--11575124	17	6.8	17	71	14	57	34	4	2	59	1.30
11578723--11578826	50	2.1	50	83	5	129	36	18	8	36	1.82
11579435--11579475	16	2.8	15	82	14	50	14	4	4	75	1.14
11579505--11579558	28	1.9	28	81	7	65	68	9	0	22	1.17
11579535--11579580	24	2.0	23	86	4	65	73	10	0	15	1.08
11580379--11580422	3	14.7	3	100	0	88	65	0	0	34	0.93
11586965--11587025	29	2.1	30	84	3	79	31	3	3	62	1.27
11587090--11587162	10	7.4	10	72	7	60	38	5	0	56	1.23
11587055--11587162	20	5.7	20	68	13	66	35	5	1	57	1.33
11588800--11588832	13	2.4	14	85	10	50	42	0	0	57	0.98
11595818--11595857	16	2.5	16	80	15	55	35	0	5	60	1.19
11597372--11597475	22	4.8	21	75	10	75	50	6	6	35	1.55
11597393--11597481	22	4.0	22	77	12	92	51	6	6	34	1.55
11597487--11597547	22	2.8	22	80	5	70	62	9	3	24	1.41
11597582--11597677	22	4.4	22	73	5	77	47	5	12	34	1.64
11597968--11598026	22	2.7	22	84	5	75	50	5	6	37	1.51
11598010--11598202	22	8.6	21	67	19	79	51	2	7	38	1.45
11598058--11598186	11	11.5	11	67	15	68	51	3	6	37	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11598294--11598357	23	2.8	22	83	4	65	45	4	14	35	1.65
11598599--11598665	22	3.0	24	85	12	90	38	2	7	50	1.46
11598674--11598832	22	7.3	22	80	5	128	47	9	6	37	1.61
11598744--11598827	43	1.9	43	85	2	114	45	9	8	36	1.67
11599220--11599457	43	5.5	43	73	7	142	47	8	4	39	1.55
11599219--11599457	22	11.0	22	74	4	126	47	8	4	38	1.55
11599221--11599430	86	2.4	87	74	8	196	46	9	4	39	1.58
11599635--11599711	22	3.5	22	72	8	68	46	7	9	36	1.64
11601280--11601323	21	2.1	22	87	8	65	72	0	11	15	1.11
11612638--11612741	50	2.1	50	83	5	129	35	17	9	37	1.82
11613415--11613516	23	4.3	24	75	14	79	72	9	0	16	1.16
11614305--11614330	3	8.7	3	100	0	52	65	0	0	34	0.93
11620855--11620901	24	2.0	22	84	8	58	23	0	10	65	1.23
11620975--11621047	10	7.5	10	77	9	71	38	4	1	56	1.27
11621002--11621047	18	2.4	19	85	7	67	41	0	2	56	1.11
11631467--11631642	22	8.0	22	72	14	105	48	5	7	38	1.55
11631648--11631708	22	2.8	22	80	5	70	62	9	3	24	1.41
11631746--11631825	22	3.6	22	75	6	81	50	5	11	33	1.60
11632128--11632628	22	22.8	22	68	12	152	49	5	8	36	1.55
11632218--11632346	11	11.5	11	67	15	68	51	3	6	37	1.44
11632681--11633015	22	14.9	22	75	6	154	45	7	7	39	1.59
11632763--11632829	11	6.1	11	74	6	55	40	1	7	50	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11632835--11633015	44	4.1	45	78	9	171	48	8	5	37	1.58
11632829--11633015	66	2.9	67	81	7	224	48	8	5	37	1.57
11632981--11633026	22	2.1	21	88	4	65	47	4	15	32	1.65
11633266--11633348	22	3.8	22	76	7	71	44	7	12	36	1.69
11633401--11633640	22	11.0	22	75	3	126	47	9	5	38	1.57
11652174--11652216	19	2.3	18	80	4	50	60	2	2	34	1.22
11658214--11658251	14	2.6	15	83	8	60	57	5	0	36	1.21
11664847--11664910	29	2.2	29	77	5	67	46	3	1	48	1.27
11668136--11668164	15	1.9	15	100	0	58	41	0	0	58	0.98
11674096--11674128	6	5.5	6	92	0	57	12	33	3	51	1.54
11697835--11698067	119	2.0	118	91	2	378	30	15	21	31	1.95
11699520--11699549	11	2.8	11	95	5	53	46	0	0	53	1.00
11699973--11700014	3	14.0	3	100	0	84	66	0	0	33	0.92
11700013--11700053	3	13.7	3	100	0	82	34	0	0	65	0.93
11701094--11701136	21	2.0	21	100	0	86	23	9	9	58	1.58
11701746--11701779	16	2.1	16	88	0	50	79	5	11	2	1.02
11701972--11702014	6	7.3	6	86	2	61	81	0	2	16	0.79
11702049--11702104	3	18.7	3	92	0	94	64	0	3	32	1.11
11702646--11702698	23	2.2	24	86	10	72	67	9	0	22	1.19
11702646--11702711	26	2.8	22	84	13	71	60	13	0	25	1.33
11702981--11703028	26	2.0	26	88	12	75	77	0	8	14	0.99
11703073--11703115	23	1.9	23	95	4	79	58	0	6	34	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11703072--11703131	20	2.8	22	83	11	63	65	0	5	30	1.14
11703116--11703157	7	5.9	7	78	15	50	78	2	0	19	0.86
11704592--11704631	20	2.0	20	85	9	55	50	0	2	47	1.14
11713259--11713337	10	7.4	11	73	20	69	1	16	1	81	0.83
11713261--11713335	4	19.8	4	76	10	52	1	17	1	80	0.86
11713277--11713327	24	2.2	23	89	3	75	0	11	1	86	0.66
11713279--11713325	8	5.9	8	80	9	60	0	12	2	85	0.70
11714914--11714940	12	2.2	12	100	0	54	77	0	0	22	0.76
11717647--11717689	20	2.2	20	83	8	52	69	0	18	11	1.17
11735987--11736026	21	1.9	21	89	0	62	42	17	17	22	1.89
11746190--11746221	16	2.0	16	100	0	64	43	0	12	43	1.42
11755717--11755766	24	2.1	23	88	7	73	52	8	20	20	1.71
11776275--11776313	20	2.0	20	89	0	60	2	28	2	66	1.18
11776937--11776962	2	13.0	2	100	0	52	50	0	0	50	1.00
11777454--11777540	36	2.5	35	80	8	90	60	0	2	36	1.09
11777500--11777551	22	2.4	22	78	15	63	57	0	0	42	0.98
11779104--11779134	13	2.4	13	94	0	53	74	0	0	25	0.82
11779193--11779221	14	2.1	14	93	6	51	58	0	0	41	0.98
11779266--11779339	33	2.2	34	85	4	98	55	0	1	43	1.08
11781369--11781431	32	2.0	32	96	0	117	28	19	7	44	1.78
11786600--11786642	20	2.2	20	87	8	61	69	6	2	20	1.23
11786603--11786648	19	2.4	19	82	7	58	67	4	2	26	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11788210--11788257	14	3.5	13	78	10	51	41	0	0	58	0.98
11788198--11788252	26	2.1	26	80	6	67	43	1	0	54	1.10
11788238--11788288	24	2.1	25	85	3	68	37	7	0	54	1.29
11792267--11792321	28	2.0	27	85	3	74	69	9	9	12	1.38
11794619--11794651	16	2.1	16	94	0	57	36	9	12	42	1.74
11797399--11797428	9	3.2	9	95	4	51	63	0	0	36	0.95
11797401--11797430	10	3.1	10	95	4	53	63	0	0	36	0.95
11797877--11797938	34	1.9	30	84	12	79	50	3	3	43	1.34
11800609--11800668	24	2.6	24	89	5	88	28	10	8	53	1.63
11801379--11801652	151	1.8	151	80	5	329	50	5	10	34	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77