genome.fa.s179.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  53  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10372718--10372774	16	3.5	16	75	11	53	28	0	3	68	1.06
10373999--10374045	24	1.9	25	91	4	78	17	0	8	74	1.05
10374296--10374572	47	5.8	47	84	7	335	38	22	12	26	1.90
10381749--10381790	21	2.0	21	81	9	50	23	11	16	47	1.80
10387132--10387172	21	2.0	21	90	0	64	60	19	4	14	1.51
10387232--10387256	11	2.3	11	100	0	50	68	16	8	8	1.38
10387970--10388542	285	2.0	283	98	0	1101	37	18	12	32	1.88
10388963--10388994	2	16.5	2	93	6	57	50	0	0	50	1.00
10392989--10393025	13	2.8	13	91	0	56	72	21	0	5	1.04
10395292--10395377	44	1.9	46	92	4	149	16	17	16	50	1.79
10398558--10398601	23	1.9	23	86	9	63	52	4	0	43	1.22
10399842--10399887	15	3.0	15	82	17	51	78	6	4	10	1.08
10399842--10399887	16	2.9	16	81	9	51	78	6	4	10	1.08
10400945--10400988	12	3.7	12	90	0	61	59	0	2	38	1.10
10400956--10400992	3	12.7	3	88	5	58	64	0	0	35	0.94
10400940--10400992	15	3.6	15	82	2	54	60	1	1	35	1.19
10402162--10402208	3	16.0	3	82	12	62	68	0	2	29	1.02
10402439--10402558	16	7.9	15	70	16	61	45	30	2	21	1.65
10402553--10402614	29	2.2	29	80	8	74	53	29	6	11	1.61
10406420--10406474	22	2.5	22	79	5	67	27	25	16	30	1.96
10406707--10406749	22	2.1	22	83	12	56	62	0	0	37	0.95
10408249--10408294	7	5.6	8	76	23	51	50	26	0	23	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10408252--10408291	17	2.4	17	91	4	64	52	25	0	22	1.47
10417035--10417064	15	1.9	16	93	6	53	33	0	0	66	0.92
10417567--10417891	174	1.9	176	88	4	496	32	16	17	33	1.93
10417957--10418000	22	2.0	22	82	8	54	40	2	9	47	1.48
10426606--10426639	16	2.1	16	100	0	68	32	11	11	44	1.77
10431428--10431571	52	2.8	51	86	4	189	27	25	6	40	1.79
10431608--10431650	11	3.9	11	93	0	77	53	25	0	20	1.46
10431894--10431977	25	3.4	25	76	16	86	21	32	5	40	1.77
10431906--10432017	49	2.3	50	79	4	120	19	31	8	40	1.83
10431906--10432017	25	4.5	26	79	7	101	19	31	8	40	1.83
10432549--10432705	52	3.0	52	84	5	176	28	23	7	40	1.80
10432729--10432771	11	3.9	11	76	11	52	51	25	0	23	1.49
10432726--10432772	22	2.1	22	88	7	69	46	25	0	27	1.53
10434415--10435159	357	2.1	348	83	4	931	37	11	14	36	1.82
10435204--10435253	23	2.2	23	92	0	82	38	20	6	36	1.77
10442892--10442932	17	2.6	16	75	24	50	48	2	7	41	1.44
10443946--10443975	15	1.9	16	93	6	53	66	0	0	33	0.92
10451358--10451426	20	3.3	21	80	8	61	69	1	2	26	1.11
10452699--10452747	17	3.0	16	88	5	71	22	0	26	51	1.49
10457969--10458009	20	2.0	21	90	4	66	58	2	4	34	1.32
10458459--10459025	142	4.0	142	96	0	1028	41	12	13	32	1.82
10458889--10458922	16	2.1	16	88	0	50	70	0	0	29	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10459953--10459983	13	2.3	14	94	5	55	25	0	0	74	0.82
10460136--10460177	16	2.4	18	88	7	61	26	11	2	59	1.45
10460130--10460178	16	2.8	18	75	15	57	26	10	4	59	1.48
10462357--10462559	73	2.8	73	84	4	241	39	14	12	33	1.83
10463041--10463089	22	2.3	21	83	13	64	30	0	2	67	1.02
10463037--10463140	29	3.5	28	74	22	88	29	0	1	67	1.08
10463035--10463140	30	3.6	29	74	20	94	30	0	1	66	1.08
10470103--10470145	21	2.0	21	90	0	68	30	25	11	32	1.91
10472763--10472792	14	2.1	14	100	0	60	53	0	0	46	1.00
10472915--10472947	17	2.0	17	88	5	50	57	3	3	36	1.29
10480915--10480948	16	2.1	16	89	10	52	58	2	0	38	1.13
10483963--10484036	32	2.4	30	73	8	76	50	0	0	50	1.00
10484181--10484205	12	2.1	12	100	0	50	56	36	0	8	1.29
10487931--10487961	16	1.9	16	93	0	53	38	22	12	25	1.90
10496349--10496415	33	2.2	31	84	10	84	65	0	4	29	1.12
10499160--10499193	16	2.0	18	88	11	54	58	0	0	41	0.98
10499917--10499978	31	2.0	31	84	6	81	40	1	12	45	1.52
10501191--10501238	24	2.0	23	84	4	60	60	2	0	37	1.09
10501482--10501545	32	1.9	35	84	9	89	53	1	4	40	1.31
10502129--10502194	12	5.3	12	75	10	53	31	1	0	66	1.01
10504672--10504717	19	2.4	19	88	3	65	73	6	10	8	1.23
10504672--10504723	19	2.7	18	82	11	59	71	5	11	11	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10506284--10506322	19	2.1	19	85	0	51	20	7	0	71	1.10
10506654--10506687	17	2.1	17	94	5	61	20	0	26	52	1.46
10506659--10506692	17	2.1	17	88	5	52	14	0	35	50	1.44
10507126--10507167	22	1.9	22	85	0	57	7	9	0	83	0.81
10507158--10507201	20	2.1	21	83	4	54	18	2	4	75	1.09
10507522--10507593	37	1.9	37	85	0	99	41	8	8	41	1.65
10507978--10508030	12	4.2	12	79	15	63	67	1	0	30	1.01
10509119--10509154	2	18.0	2	100	0	72	50	0	0	50	1.00
10509430--10509466	19	2.1	18	90	10	58	78	0	5	16	0.93
10511713--10511751	20	2.0	20	84	0	51	56	0	5	38	1.22
10512104--10512132	14	2.0	15	93	6	51	34	0	0	65	0.93
10512634--10512958	174	1.9	176	89	3	512	32	16	17	33	1.93
10520936--10520985	23	2.2	23	92	0	82	36	6	20	38	1.77
10526383--10526412	15	1.9	16	93	6	53	33	0	0	66	0.92
10535716--10535745	15	1.9	16	93	6	53	33	0	0	66	0.92
10536246--10536568	174	1.9	175	90	3	517	31	17	17	33	1.93
10544544--10544593	23	2.2	23	92	0	82	36	6	20	38	1.77
10549983--10550012	15	1.9	16	93	6	53	33	0	0	66	0.92
10553037--10553082	21	2.1	22	84	11	60	32	0	0	67	0.91
10553272--10553307	18	1.9	19	94	5	65	50	0	0	50	1.00
10553272--10553306	10	3.7	10	88	11	56	48	0	0	51	1.00
10556411--10556451	18	2.4	17	81	18	50	9	7	2	80	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10556515--10556563	23	2.1	24	88	3	73	30	8	14	46	1.73
10558101--10558220	51	2.4	51	91	0	186	36	19	17	26	1.94
10558751--10558779	13	2.1	14	93	6	51	27	0	0	72	0.85
10559695--10559766	14	5.1	14	76	8	56	48	1	0	50	1.09
10559808--10559842	18	2.1	16	89	10	52	62	0	0	37	0.95
10564739--10564787	20	2.6	18	81	18	55	28	6	0	65	1.16
10568215--10568243	8	3.8	8	95	4	51	51	0	6	41	1.28
10572620--10572665	23	2.0	23	87	4	67	41	0	6	52	1.27
10574861--10574912	15	3.3	15	75	20	52	40	0	0	59	0.97
10576334--10576586	126	2.0	126	98	0	488	37	19	18	24	1.94
10577802--10577828	9	3.0	9	100	0	54	11	0	0	88	0.50
10583685--10583723	19	2.0	19	85	5	51	71	0	7	20	1.10
10600179--10600244	31	2.1	31	91	0	105	46	12	18	22	1.81
10603457--10603503	24	2.0	24	86	0	67	34	6	2	57	1.36
10608034--10608075	22	1.9	22	85	0	57	11	7	9	71	1.31
10610568--10610616	20	2.6	18	81	18	55	65	0	6	28	1.16
10616021--10616064	16	2.8	15	80	10	52	50	0	2	47	1.13
10616136--10616183	9	5.2	9	80	5	51	47	0	2	50	1.12
10616121--10616183	18	3.4	18	80	6	63	47	0	1	50	1.10
10616420--10616462	19	2.1	22	83	12	56	16	9	9	65	1.47
10616968--10616996	13	2.1	14	93	6	51	72	0	0	27	0.85
10617532--10617618	45	2.0	44	95	2	156	34	17	12	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10618626--10618675	19	2.7	19	81	3	57	66	0	0	34	0.92
10629053--10631183	428	5.0	427	97	1	4098	37	15	12	34	1.85
10629053--10631183	852	2.5	853	98	1	4132	37	15	12	34	1.85
10640021--10640086	34	1.9	34	84	0	87	33	13	19	33	1.91
10648165--10648198	16	2.1	16	89	10	52	58	2	0	38	1.13
10654376--10654489	3	40.7	3	73	19	52	18	3	0	78	0.90
10654349--10654490	20	7.2	20	75	16	111	20	2	0	76	0.96
10654363--10654496	26	5.4	25	72	16	91	18	2	0	77	0.94
10654356--10654495	54	2.7	52	83	12	171	20	2	0	76	0.96
10654369--10654496	19	6.8	19	75	12	104	18	3	0	78	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77