genome.fa.s179.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  71  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14323329--14323365	2	18.5	2	94	0	65	0	45	0	54	1.00
14325260--14325292	14	2.5	13	90	9	57	45	6	3	45	1.43
14340233--14340268	18	2.0	18	88	0	54	44	0	2	52	1.15
14340375--14340442	35	2.0	32	81	13	75	58	0	5	35	1.22
14340406--14340469	25	2.5	28	75	17	66	53	0	4	42	1.22
14344233--14344275	22	2.0	22	85	0	59	34	0	0	65	0.93
14346806--14346856	25	2.0	26	81	7	61	50	3	3	41	1.39
14348976--14349017	9	4.5	10	82	11	54	57	0	0	42	0.99
14348985--14349025	17	2.4	17	91	4	64	58	0	0	41	0.98
14348981--14349024	8	5.1	8	83	10	52	54	0	0	45	0.99
14348918--14349035	50	2.4	50	77	13	127	59	2	0	37	1.17
14348925--14349040	19	5.5	20	70	19	60	56	2	0	39	1.19
14349077--14349122	17	2.5	20	86	13	71	58	10	0	30	1.32
14350147--14350211	10	6.7	10	83	11	64	43	0	0	56	0.99
14350144--14350182	19	2.1	19	85	0	51	51	0	0	48	1.00
14350144--14350208	9	6.9	9	79	10	67	44	0	0	55	0.99
14350587--14350651	21	3.0	22	95	4	123	27	23	32	16	1.96
14360432--14360492	25	2.4	25	83	0	77	37	1	8	52	1.41
14360464--14360497	17	1.9	18	94	5	61	41	5	5	47	1.52
14362218--14362263	23	2.0	24	82	4	58	39	4	8	47	1.54
14362294--14362359	28	2.3	29	73	26	70	59	0	1	39	1.07
14362294--14362401	15	6.9	16	72	22	56	59	0	1	38	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14362300--14362362	25	2.4	26	78	21	62	58	0	1	39	1.07
14368279--14368303	9	2.8	9	100	0	50	12	0	0	88	0.53
14368347--14368393	3	15.7	3	100	0	94	65	0	0	34	0.93
14368937--14368996	28	2.1	29	84	3	77	38	1	8	51	1.42
14370255--14370282	3	9.3	3	100	0	56	32	35	0	32	1.58
14375177--14375259	29	2.9	28	81	15	89	37	0	1	61	1.04
14375204--14375259	12	4.4	12	77	18	51	37	0	0	62	0.95
14375218--14375259	15	2.9	15	79	17	52	38	0	0	61	0.96
14381093--14381156	30	2.1	30	88	5	94	53	4	0	42	1.22
14381113--14381159	11	4.0	12	81	10	53	59	2	0	38	1.09
14381797--14381838	21	2.0	21	90	9	68	35	0	0	64	0.94
14381797--14381834	10	3.7	10	80	19	51	34	0	0	65	0.93
14381827--14381880	20	2.7	21	83	16	78	51	0	0	48	1.00
14381824--14381876	23	2.2	24	87	12	74	47	0	0	52	1.00
14381875--14381918	5	8.2	5	82	12	52	59	2	2	36	1.23
14382374--14382465	10	9.1	10	72	12	55	51	5	0	43	1.25
14382373--14382463	11	9.0	10	70	12	62	52	5	0	41	1.24
14382973--14383008	15	2.4	15	86	13	56	47	5	0	47	1.25
14383133--14383210	21	3.5	22	76	21	74	51	2	3	42	1.34
14383311--14383358	18	2.6	18	81	12	62	52	2	0	45	1.12
14384296--14384345	21	2.4	20	76	6	55	42	22	12	24	1.87
14388135--14388169	16	2.1	16	89	10	52	82	0	2	14	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14388736--14388774	18	2.2	18	90	0	60	38	23	10	28	1.87
14389591--14389655	32	2.0	32	82	5	78	47	1	1	49	1.20
14392204--14392261	24	2.4	24	85	0	80	27	8	10	53	1.64
14392998--14393074	21	3.8	21	79	10	88	58	5	0	36	1.21
14393041--14393129	18	4.8	18	70	20	60	59	4	2	33	1.30
14392997--14393100	39	2.6	40	79	11	106	57	4	0	37	1.20
14392997--14393093	21	4.7	20	76	13	81	57	5	0	37	1.21
14394705--14394744	16	2.5	16	87	0	53	75	0	15	10	1.05
14395930--14395977	20	2.5	19	83	6	62	25	2	4	68	1.18
14397597--14397643	20	2.3	20	81	0	58	61	2	0	36	1.08
14398045--14398104	25	2.4	25	94	0	111	53	0	3	43	1.17
14398046--14398126	25	3.5	23	83	9	85	55	1	2	40	1.21
14398245--14398281	20	2.0	20	89	10	60	48	0	0	51	1.00
14398459--14398529	34	2.1	33	86	2	97	32	4	11	52	1.56
14400231--14400277	20	2.3	20	92	0	85	36	12	25	25	1.92
14400873--14400951	32	2.5	33	75	8	83	50	2	0	46	1.14
14403536--14403590	24	2.3	24	93	0	92	27	10	9	52	1.66
14404318--14404370	17	3.1	17	79	17	65	62	3	0	33	1.13
14404313--14404420	10	11.4	9	73	17	53	62	4	0	32	1.22
14404393--14404479	29	3.0	28	73	13	68	60	5	3	29	1.36
14405963--14406009	24	2.0	24	95	0	85	27	12	10	48	1.74
14406164--14406242	22	3.6	22	78	11	74	34	0	8	56	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14406179--14406248	15	4.8	15	72	21	51	35	0	7	57	1.26
14406190--14406228	20	2.0	20	89	0	60	38	0	5	56	1.22
14412131--14412170	21	1.9	20	85	10	53	72	7	12	7	1.27
14412131--14412172	22	1.9	22	85	9	59	71	7	11	9	1.31
14413363--14413421	31	1.9	31	86	6	84	16	1	6	74	1.11
14413395--14413448	21	2.4	23	81	9	67	14	1	7	75	1.09
14414778--14414913	60	2.3	59	87	5	184	44	11	22	22	1.83
14415680--14415709	15	1.9	15	93	6	51	3	6	3	86	0.77
14416005--14416043	13	2.9	14	80	7	53	5	17	0	76	0.96
14419072--14419157	3	28.7	3	100	0	172	67	0	0	32	0.91
14419464--14419530	22	3.0	22	80	10	66	64	19	5	10	1.45
14427209--14427581	193	1.9	192	89	4	583	36	14	11	38	1.82
14427849--14427905	14	3.8	14	76	15	51	28	1	0	70	0.98
14427852--14427905	18	3.0	18	78	10	56	29	1	0	68	1.00
14428202--14428240	18	2.1	19	85	4	53	76	0	0	23	0.78
14429107--14429178	21	3.6	21	81	14	107	9	9	52	27	1.65
14429109--14429170	18	3.3	18	72	24	65	9	9	51	29	1.66
14429233--14429280	17	2.8	17	83	0	69	12	4	8	75	1.18
14429435--14430571	48	24.2	47	85	5	1394	35	24	12	26	1.92
14429435--14430571	95	12.1	92	84	6	1287	35	24	12	26	1.92
14430461--14430691	124	1.9	120	91	5	374	34	25	10	29	1.89
14430577--14430724	47	3.2	47	85	12	225	35	25	9	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14438986--14439046	5	12.6	5	74	19	58	3	0	19	77	0.91
14439488--14439521	15	2.3	15	90	10	52	5	0	17	76	0.98
14439981--14440333	193	1.8	192	91	1	582	36	13	12	37	1.83
14440640--14440675	14	2.6	14	90	0	54	30	0	0	69	0.89
14441894--14441955	18	3.3	18	76	24	74	8	9	53	29	1.62
14441892--14441955	21	3.2	21	82	17	100	7	9	54	28	1.60
14441916--14441972	30	1.9	30	88	0	87	8	8	52	29	1.62
14442026--14442064	17	2.3	17	86	0	51	12	5	7	74	1.20
14443449--14443477	15	2.0	15	93	6	51	44	0	0	55	0.99
14443581--14443676	39	2.5	39	98	0	183	39	16	11	32	1.84
14443465--14443646	102	1.8	101	84	3	233	40	12	10	36	1.78
14444461--14444507	24	1.9	24	86	4	67	48	17	2	31	1.58
14446074--14446105	17	1.9	17	93	6	57	37	18	0	43	1.51
14447989--14448073	44	1.9	44	86	9	120	21	20	24	34	1.97
14449925--14449975	22	2.5	20	79	14	59	27	1	1	68	1.11
14450092--14450130	13	2.9	13	88	3	51	48	10	2	38	1.51
14450793--14450839	10	4.8	10	84	2	60	61	8	6	23	1.48
14450794--14450831	20	1.9	20	100	0	76	63	5	7	23	1.42
14451408--14451467	3	20.0	3	100	0	120	66	0	0	33	0.92
14456223--14456357	10	14.4	9	72	22	70	22	5	0	72	1.04
14456225--14456340	3	39.7	3	69	20	68	23	6	0	70	1.09
14456215--14456354	52	2.8	51	81	13	134	22	5	0	71	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14456215--14456340	30	4.3	29	79	12	105	23	6	0	70	1.09
14456481--14456551	37	1.9	37	91	0	115	33	12	28	25	1.92
14457224--14457288	19	3.3	19	79	12	60	12	0	10	76	1.01
14457483--14457757	60	4.6	59	78	10	267	49	5	10	34	1.62
14457465--14457756	118	2.4	120	84	6	387	48	5	11	33	1.63
14467843--14467923	33	2.5	33	79	0	90	33	22	18	25	1.97
14467670--14467948	133	2.1	134	80	4	303	36	18	12	31	1.89
14471436--14471490	26	2.1	26	93	0	92	36	20	9	34	1.84
14478889--14478915	13	2.1	13	100	0	54	48	22	14	14	1.81
14480875--14480921	23	2.0	23	91	0	76	44	4	12	38	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77