genome.fa.s179.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  63  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12604569--12604873	162	1.9	161	82	4	391	41	7	9	40	1.67
12604730--12605888	179	6.4	178	72	11	478	41	7	8	42	1.65
12604730--12611358	361	18.4	357	71	11	2428	40	7	9	42	1.64
12604730--12607786	721	4.3	719	75	9	1814	41	7	9	42	1.64
12604795--12606904	180	11.7	178	73	11	1079	40	7	9	42	1.65
12606981--12607818	181	4.6	180	77	5	715	41	6	8	43	1.62
12607790--12607868	40	2.0	40	94	0	140	45	6	6	41	1.55
12607829--12611358	180	19.7	180	75	7	2256	40	7	9	43	1.64
12609874--12610714	176	4.7	175	75	9	459	39	7	9	43	1.66
12611378--12611838	180	2.6	180	79	4	457	40	9	9	40	1.70
12611713--12611963	131	1.9	130	81	7	303	38	7	10	43	1.68
12611929--12614724	181	15.4	178	70	10	791	39	7	10	41	1.68
12611850--12614733	360	8.0	361	71	11	920	39	7	10	42	1.68
12612918--12612978	21	2.7	23	80	15	72	27	9	4	57	1.52
12613482--12614724	538	2.3	539	78	7	1277	39	7	9	42	1.66
12615462--12615919	179	2.5	182	78	7	434	38	6	10	44	1.65
12616838--12617290	183	2.5	180	79	5	486	40	4	11	43	1.61
12617409--12618501	177	6.1	176	73	11	567	40	7	9	42	1.65
12617584--12618565	536	1.8	534	80	7	1195	39	7	9	43	1.65
12618561--12622131	181	19.9	179	76	6	2560	40	7	9	41	1.66
12620234--12620285	18	2.9	18	77	13	63	46	7	9	36	1.66
12618583--12627654	361	25.7	358	69	13	2721	40	7	9	41	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12622199--12623064	180	4.8	182	77	7	718	41	7	9	41	1.65
12623349--12625828	180	14.0	182	72	13	1123	40	7	9	42	1.67
12623079--12627654	355	13.0	351	70	13	1139	40	7	9	42	1.66
12623121--12624235	178	6.3	176	75	9	508	39	7	9	43	1.64
12626102--12627654	181	8.7	180	75	9	1156	41	6	9	42	1.64
12626739--12626785	16	2.7	18	74	16	53	44	10	6	38	1.65
12627344--12627649	168	1.8	168	84	5	422	43	6	8	42	1.60
12628222--12633320	181	28.2	180	70	12	1403	40	7	9	42	1.67
12628746--12630513	180	10.0	171	72	11	584	40	7	9	42	1.66
12630519--12630653	65	2.0	68	82	4	168	45	4	11	37	1.61
12631286--12631314	14	2.0	15	93	6	51	34	0	6	58	1.25
12631676--12631715	16	2.5	16	95	0	71	47	2	17	32	1.61
12631515--12631894	196	1.9	196	81	7	459	42	7	9	41	1.65
12632562--12632861	164	1.8	163	80	10	362	42	6	9	42	1.61
12635325--12635378	26	2.1	25	86	10	74	37	5	3	53	1.42
12635535--12635595	21	2.9	21	82	4	68	34	1	11	52	1.47
12635536--12635595	22	2.8	21	82	5	66	35	1	11	51	1.48
12636745--12636784	20	2.0	20	95	0	71	52	0	0	47	1.00
12636876--12636903	2	14.0	2	100	0	56	50	0	0	50	1.00
12641016--12641047	15	2.1	15	100	0	64	34	18	18	28	1.95
12643774--12643879	51	2.1	52	90	1	169	42	2	43	11	1.55
12653569--12653631	31	2.0	31	100	0	126	41	22	9	26	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12655133--12655211	27	3.0	27	63	17	67	44	1	43	11	1.48
12655122--12655226	51	2.1	51	92	0	174	41	2	43	11	1.55
12669426--12669463	5	7.4	5	96	3	67	57	0	0	42	0.98
12669662--12669713	24	2.2	24	83	10	63	19	9	0	71	1.13
12670037--12670069	13	2.5	13	100	0	66	21	9	6	63	1.45
12671293--12671352	22	2.7	22	80	7	59	38	10	8	43	1.68
12671564--12671714	22	6.9	22	78	5	126	37	3	7	50	1.50
12671564--12671724	66	2.4	66	84	6	193	37	4	8	49	1.54
12671605--12671728	44	2.8	44	76	6	108	38	5	8	46	1.59
12671749--12671796	22	2.2	22	84	0	60	33	6	12	47	1.66
12671826--12671908	22	3.8	22	76	10	55	38	9	7	44	1.65
12672150--12672261	22	5.1	21	80	4	89	38	9	4	47	1.57
12672168--12672325	44	3.6	42	83	7	172	39	3	6	50	1.48
12672193--12672296	11	9.5	11	73	8	77	38	1	6	52	1.39
12672191--12672325	22	6.1	22	83	3	155	39	2	7	51	1.42
12672168--12672325	66	2.4	66	81	7	180	39	3	6	50	1.48
12672168--12672330	22	7.5	22	80	4	143	39	4	6	49	1.49
12672325--12672391	11	6.1	11	77	6	64	49	7	1	41	1.40
12672330--12672396	22	3.0	23	89	4	102	49	7	2	40	1.46
12672364--12672446	22	3.8	21	76	12	71	39	9	6	44	1.62
12672857--12672915	21	2.8	20	82	7	64	33	6	6	52	1.54
12672512--12672973	22	21.0	22	67	12	108	35	7	6	50	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12672956--12673005	22	2.3	22	82	6	66	38	8	4	50	1.51
12673280--12673329	22	2.3	22	86	6	66	40	10	2	48	1.48
12673296--12673664	22	17.2	22	69	13	148	34	8	5	51	1.56
12673465--12673508	11	4.1	10	83	13	52	25	2	6	65	1.28
12675289--12675351	27	2.4	27	89	5	94	57	11	9	22	1.62
12676053--12676474	149	2.8	147	91	2	639	45	5	8	40	1.58
12689113--12689139	2	13.5	2	100	0	54	51	0	0	48	1.00
12696863--12696894	2	16.0	2	100	0	64	50	0	0	50	1.00
12701650--12701702	12	4.6	12	79	13	58	58	0	0	41	0.98
12701647--12701698	10	5.2	10	77	9	52	57	0	0	42	0.98
12701673--12701706	12	2.8	12	95	0	59	64	0	0	35	0.94
12711517--12711541	2	12.5	2	100	0	50	52	0	48	0	1.00
12714407--12714485	36	2.2	36	77	4	90	45	0	1	53	1.08
12715744--12715777	3	11.3	3	100	0	68	67	0	0	32	0.91
12722046--12722090	22	2.0	22	91	0	72	28	31	17	22	1.97
12738227--12738305	38	2.1	38	97	0	149	27	13	13	44	1.83
12739291--12739327	2	18.5	2	100	0	74	51	0	0	48	1.00
12745611--12745645	2	17.5	2	100	0	70	0	48	0	51	1.00
12745796--12745835	21	1.9	21	89	0	62	50	0	0	50	1.00
12747072--12747137	4	16.0	4	73	17	55	50	6	1	42	1.36
12747072--12747138	18	3.8	18	74	12	59	50	5	1	41	1.36
12750050--12750097	6	7.7	6	81	9	51	72	0	2	25	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12750240--12750291	27	2.0	27	92	3	88	51	0	3	44	1.19
12750549--12750636	42	2.1	42	95	0	158	57	6	1	34	1.32
12750562--12750630	23	3.2	23	69	23	76	57	7	0	34	1.26
12768553--12768579	2	13.5	2	100	0	54	51	0	0	48	1.00
12768721--12768757	6	6.3	6	87	6	58	0	35	16	48	1.46
12781953--12782000	3	16.0	3	100	0	96	66	0	0	33	0.92
12785410--12785441	15	2.0	17	88	11	50	46	0	3	50	1.17
12790775--12790804	5	5.8	5	96	4	51	83	0	0	16	0.65
12794114--12794185	33	2.2	32	80	12	74	59	6	1	31	1.32
12795131--12795156	3	8.7	3	100	0	52	30	0	0	69	0.89
12796220--12796264	22	2.0	23	82	4	56	31	26	2	40	1.68
12796545--12796623	26	3.0	26	81	3	104	35	5	15	44	1.68
12796545--12796619	27	2.8	26	85	2	96	36	5	16	42	1.70
12796694--12796750	30	1.9	30	85	0	78	26	1	21	50	1.58
12796726--12796781	29	1.9	29	88	0	85	21	0	12	66	1.25
12801078--12801463	157	2.5	157	78	2	362	31	6	17	44	1.74
12801230--12801563	162	2.1	162	82	4	403	33	6	17	42	1.75
12802617--12802688	35	2.1	35	94	0	126	33	1	12	52	1.48
12804106--12804139	2	16.5	2	93	6	59	50	2	0	47	1.16
12807359--12807397	2	20.0	2	94	5	71	48	0	0	51	1.00
12807361--12807394	17	2.0	17	100	0	68	47	0	0	52	1.00
12809577--12809606	2	14.5	2	93	6	51	50	3	0	46	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12814259--12814298	18	2.2	18	86	0	53	5	15	5	75	1.15
12819731--12819769	20	2.1	19	86	13	55	61	12	0	25	1.31
12820149--12820236	44	2.0	44	84	6	115	51	13	13	21	1.76
12820706--12820738	3	11.0	3	93	0	57	30	0	3	66	1.06
12822249--12822318	30	2.3	30	80	9	81	27	1	20	51	1.56
12823145--12823178	16	2.1	16	88	0	50	79	2	11	5	1.02
12823369--12823402	16	2.1	16	89	10	52	82	2	11	2	0.89
12823121--12823574	223	2.0	223	95	2	813	45	8	6	38	1.62
12823460--12823737	58	4.8	58	83	2	308	38	10	6	45	1.63
12824575--12824802	27	8.7	25	68	24	116	67	0	3	27	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77