genome.fa.s179.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  7  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1013843--1014092	54	4.6	52	73	14	161	54	2	0	42	1.16
1013837--1014038	101	2.0	99	80	10	223	54	2	0	41	1.19
1013920--1014068	44	3.4	42	76	17	128	55	1	0	42	1.13
1013909--1014068	31	4.9	31	69	20	69	55	1	0	42	1.12
1013964--1014093	57	2.4	53	84	8	163	56	0	0	43	1.04
1013931--1014083	31	5.2	31	74	13	133	54	0	0	43	1.09
1013915--1014075	15	10.9	15	74	12	120	55	1	0	42	1.12
1013843--1014175	155	2.1	157	75	12	326	51	2	0	45	1.19
1014183--1014256	9	8.6	9	70	19	59	50	1	0	48	1.09
1014183--1014254	25	2.8	26	91	4	112	51	1	0	47	1.09
1014180--1014242	16	4.4	16	70	24	59	49	1	0	49	1.10
1020818--1020863	22	2.2	20	82	14	58	34	0	0	65	0.93
1020902--1020941	13	3.1	13	81	0	53	52	0	0	47	1.00
1022198--1022231	7	4.6	7	92	7	50	38	0	0	61	0.96
1022196--1022237	14	2.8	16	82	17	63	40	0	0	59	0.97
1024369--1024423	29	1.9	28	85	3	74	43	1	0	54	1.10
1024388--1024421	17	2.0	18	88	11	54	50	0	0	50	1.00
1024924--1025001	21	3.7	21	77	5	77	56	1	2	39	1.21
1033311--1033343	16	2.1	16	88	11	50	45	0	0	54	0.99
1033870--1033921	27	2.0	25	82	14	61	36	1	0	61	1.07
1034365--1034427	26	2.3	26	81	8	72	42	3	0	53	1.16
1035138--1035175	20	1.9	20	94	0	67	50	15	5	28	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1035557--1035611	28	2.0	28	85	0	74	52	0	0	47	1.00
1036003--1036027	11	2.3	11	100	0	50	0	28	0	72	0.86
1037279--1037337	29	2.0	29	100	0	118	33	10	16	38	1.83
1041880--1041921	21	2.0	22	90	4	68	35	4	0	59	1.19
1042296--1042342	19	2.4	20	85	3	60	25	2	6	65	1.27
1042296--1042350	19	2.8	19	78	5	56	25	3	5	65	1.31
1042483--1042536	27	2.0	27	85	7	74	48	1	3	46	1.30
1042476--1042545	19	3.6	19	73	9	61	45	1	4	48	1.30
1042537--1042636	47	2.2	45	81	10	116	36	6	9	49	1.59
1042542--1042636	43	2.1	46	82	7	115	36	6	9	47	1.62
1042645--1042689	18	2.5	18	89	7	65	37	2	2	57	1.23
1043385--1043417	14	2.4	14	90	10	50	54	0	0	45	0.99
1043834--1043887	16	3.4	15	77	10	54	61	1	1	35	1.18
1043831--1043903	27	2.6	28	81	12	80	58	1	1	38	1.15
1044465--1044502	15	2.4	16	82	8	51	50	2	2	44	1.30
1047406--1047438	14	2.4	14	85	15	50	30	0	0	69	0.88
1051297--1051345	19	2.6	19	73	0	53	34	14	6	44	1.70
1056106--1056167	29	2.1	32	82	14	87	48	1	3	46	1.28
1056530--1056609	42	1.9	42	84	5	108	31	13	8	46	1.74
1056911--1056964	24	2.2	24	96	0	99	48	0	3	48	1.19
1056984--1057030	11	4.2	11	78	13	51	51	4	0	44	1.21
1058728--1058763	18	2.0	18	88	0	54	30	0	11	58	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1058864--1058904	18	2.3	18	91	4	66	75	0	2	21	0.92
1058869--1058936	29	2.3	29	87	7	93	76	2	1	19	0.99
1058868--1058941	5	14.8	5	80	12	64	77	2	2	17	1.01
1058866--1058949	26	3.2	24	77	12	69	78	2	3	15	0.99
1060337--1060416	30	2.5	33	71	13	78	52	15	15	17	1.75
1060392--1061067	119	5.7	119	75	3	529	47	13	19	19	1.83
1060392--1060892	237	2.1	238	81	2	596	46	12	20	20	1.83
1060989--1061120	56	2.4	56	84	2	167	45	16	17	20	1.86
1061960--1062001	12	3.5	12	81	18	52	14	0	4	80	0.86
1061960--1062043	25	3.4	23	72	19	71	11	3	5	78	1.05
1062008--1062040	14	2.4	14	100	0	66	6	6	6	81	0.97
1065669--1065693	13	1.9	13	100	0	50	60	0	0	40	0.97
1066020--1066071	26	1.9	28	88	7	81	30	0	5	63	1.18
1066133--1066172	18	2.3	18	91	4	64	30	0	7	62	1.23
1066133--1066188	17	3.2	17	85	7	51	30	1	7	60	1.33
1066268--1066334	5	13.8	5	73	16	52	76	1	4	17	1.04
1066267--1066336	24	3.0	24	85	8	90	77	1	4	17	1.01
1066265--1066336	18	4.4	17	75	18	64	76	1	4	18	1.02
1066291--1066328	19	2.1	19	90	9	62	81	2	0	15	0.80
1067114--1067205	3	30.3	3	75	12	82	59	4	2	33	1.29
1070524--1070564	19	2.3	17	87	8	55	78	4	2	14	1.03
1070659--1070703	17	2.5	18	82	10	56	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1070646--1070701	18	3.1	17	78	14	51	58	1	1	37	1.19
1070678--1070707	15	2.0	15	93	0	51	63	0	0	36	0.95
1082251--1082296	23	2.0	23	86	0	65	30	19	26	23	1.98
1082896--1082926	3	10.3	3	100	0	62	32	0	32	35	1.58
1083679--1083879	105	1.9	105	79	7	221	47	1	9	41	1.46
1096020--1096107	29	3.0	29	80	11	90	31	2	3	62	1.24
1096020--1096129	30	3.6	30	82	8	116	30	1	4	62	1.25
1096036--1096129	33	3.0	31	81	10	113	29	1	3	65	1.14
1103075--1103103	12	2.5	12	94	5	51	24	17	6	51	1.69
1108547--1108598	25	2.0	26	85	3	70	50	7	1	40	1.42
1109417--1109461	18	2.3	20	81	11	58	42	0	0	57	0.98
1109657--1109684	14	2.0	14	100	0	56	57	0	0	42	0.99
1109854--1109926	32	2.3	32	100	0	146	19	32	15	32	1.92
1110314--1110343	16	1.9	16	93	6	53	63	0	0	36	0.95
1112329--1112401	26	2.7	26	76	17	62	64	1	1	32	1.11
1115475--1115548	37	1.9	39	81	10	91	51	0	0	48	1.00
1115541--1115581	18	2.4	16	81	14	55	56	4	2	36	1.34
1115547--1115582	18	2.0	18	94	0	63	55	5	2	36	1.38
1118915--1119068	57	2.7	57	83	6	186	35	11	7	45	1.69
1119084--1119145	13	4.8	12	82	7	61	80	0	3	16	0.83
1119084--1119143	21	2.8	21	84	5	75	80	0	3	16	0.85
1119174--1119204	3	10.7	3	93	6	55	70	0	0	29	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1119996--1120103	21	5.1	21	71	9	69	65	2	5	25	1.28
1119998--1120103	43	2.5	41	81	4	122	65	2	5	26	1.29
1120082--1120133	14	3.8	13	75	25	54	61	1	1	34	1.18
1120082--1120133	10	5.1	10	82	13	61	61	1	1	34	1.18
1120052--1120186	35	3.7	36	71	13	96	63	3	2	29	1.26
1120204--1120277	7	11.0	6	84	11	67	77	5	0	17	0.96
1120204--1120277	14	5.5	13	81	12	78	77	5	0	17	0.96
1120461--1120504	15	3.0	15	83	3	63	52	0	4	43	1.22
1121056--1121100	12	3.8	12	78	21	58	42	0	2	55	1.12
1121090--1121141	22	2.5	22	93	6	90	50	0	0	50	1.00
1121871--1121909	20	2.0	20	89	0	60	51	0	5	43	1.24
1123805--1123840	14	2.6	14	86	0	54	44	0	0	55	0.99
1127063--1127104	2	21.0	2	100	0	84	50	0	0	50	1.00
1127125--1127159	18	1.9	18	88	0	52	74	5	8	11	1.22
1127207--1127234	4	7.0	4	100	0	56	50	0	0	50	1.00
1128278--1128318	20	2.0	20	85	4	55	63	7	0	29	1.21
1129481--1129514	15	2.3	15	95	5	61	26	0	8	64	1.22
1129567--1129853	148	1.9	147	92	0	475	45	11	8	34	1.71
1130561--1130602	10	4.1	10	85	11	50	73	0	0	26	0.83
1130800--1130847	17	2.8	18	84	9	57	52	8	0	39	1.32
1143185--1143227	18	2.4	19	77	14	56	53	0	0	46	1.00
1143204--1143263	22	2.6	22	82	15	77	56	1	0	41	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1143256--1143286	8	4.0	8	91	8	55	61	0	0	38	0.96
1143256--1143286	15	2.1	15	100	0	62	61	0	0	38	0.96
1144484--1144529	20	2.2	20	82	14	58	50	2	10	36	1.50
1144487--1144529	21	2.0	21	86	8	61	46	2	11	39	1.53
1145365--1145397	14	2.4	14	94	0	57	36	0	0	63	0.95
1150928--1150969	20	2.2	19	83	12	50	71	0	19	9	1.13
1151972--1151997	4	6.5	4	100	0	52	23	0	0	76	0.78
1154378--1154412	18	2.0	18	88	5	54	45	14	5	34	1.68
1159451--1159612	81	2.0	81	100	0	324	48	13	18	19	1.81
1166708--1166741	15	2.3	15	90	10	52	88	0	8	2	0.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77