genome.fa.s179.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  3  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387125--387610	84	5.8	83	89	6	732	36	22	17	23	1.95
388834--388894	31	1.9	33	90	6	99	6	19	0	73	1.04
392635--392673	12	3.2	12	92	0	60	69	7	7	15	1.35
392705--393207	59	8.7	57	83	9	578	34	12	7	44	1.72
392703--393203	174	2.9	171	85	9	671	35	12	7	43	1.72
393047--393138	27	3.2	27	63	19	69	35	15	6	42	1.73
393238--393272	10	3.5	10	85	14	54	77	0	0	22	0.78
393232--393271	20	2.0	21	95	5	73	75	0	2	22	0.93
393231--393301	6	11.5	6	74	15	56	77	0	4	18	0.93
393231--393370	11	12.4	11	68	22	53	74	2	4	19	1.09
393865--393913	25	1.9	25	91	4	80	42	16	2	38	1.60
394183--394235	28	1.9	27	84	3	70	69	1	11	16	1.26
394204--394244	17	2.5	16	82	17	57	70	4	9	14	1.30
394206--394242	18	2.1	18	94	0	65	70	5	8	16	1.30
394300--394340	7	6.1	7	88	5	59	73	0	0	26	0.84
394297--394343	14	3.1	14	90	9	67	74	0	0	25	0.82
394405--394449	10	4.4	10	88	5	72	86	0	13	0	0.57
394405--394448	19	2.2	20	88	11	65	86	0	13	0	0.57
395380--395720	43	7.9	44	73	10	258	25	11	17	46	1.81
395910--395940	10	3.1	10	95	0	53	90	0	6	3	0.55
396195--396219	11	2.3	11	100	0	50	32	0	16	52	1.44
397023--397114	47	2.0	47	85	6	125	53	5	8	32	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
398725--398772	23	2.1	24	84	7	64	29	4	4	62	1.32
401488--401526	12	3.2	12	92	0	60	69	7	7	15	1.35
401556--402081	57	8.9	57	82	9	605	34	12	7	45	1.70
401554--402081	178	3.0	175	87	6	739	35	12	7	44	1.71
402096--402130	10	3.5	10	85	14	54	77	0	0	22	0.78
402090--402129	20	2.0	21	95	5	73	75	0	2	22	0.93
402089--402159	6	11.5	6	74	15	56	77	0	4	18	0.93
402089--402228	11	12.4	11	68	22	53	74	2	3	19	1.09
402722--402770	25	1.9	25	87	4	71	42	14	2	40	1.57
403061--403102	17	2.5	17	88	11	68	71	4	9	14	1.28
403033--403102	29	2.4	30	80	9	81	70	2	10	17	1.28
403066--403100	18	1.9	18	94	0	61	71	5	8	14	1.29
403158--403198	7	5.9	7	85	8	57	73	0	0	26	0.84
403155--403195	14	2.8	14	92	7	64	75	0	0	24	0.80
403151--403198	14	3.6	13	86	10	62	75	0	0	25	0.81
403260--403306	10	4.6	10	89	5	76	87	0	12	0	0.55
404234--404584	44	8.1	44	74	10	235	25	10	18	45	1.81
404238--404579	88	3.9	87	78	9	297	24	11	17	46	1.81
404234--404552	131	2.5	131	82	6	348	24	11	17	47	1.80
405054--405078	11	2.3	11	100	0	50	32	0	16	52	1.44
405888--405978	46	2.0	46	86	4	130	52	5	8	32	1.55
406724--406768	22	2.1	21	87	4	63	26	2	13	57	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
407604--407648	24	1.9	23	86	13	65	31	2	2	64	1.18
409578--409607	15	1.9	16	93	6	53	6	10	3	80	1.01
419925--419965	17	2.3	18	91	4	66	78	17	0	4	0.93
420975--421203	14	14.9	16	68	19	87	47	30	0	20	1.56
421048--421129	22	3.7	22	88	6	114	51	30	1	17	1.53
420983--421090	31	3.5	31	83	6	123	47	30	1	20	1.61
420997--421188	105	1.8	105	91	4	316	50	31	1	17	1.54
421097--421218	31	4.0	31	78	7	124	47	31	0	20	1.50
421092--421203	30	3.7	31	81	7	113	49	32	0	18	1.48
421379--421430	22	2.3	23	83	3	70	51	19	0	28	1.47
421391--421527	51	2.6	52	79	5	134	48	29	1	21	1.59
421464--421506	15	2.8	16	82	7	61	48	34	0	16	1.46
421438--421537	51	2.0	51	90	4	157	48	33	1	18	1.55
421505--421566	30	2.1	30	84	6	81	51	32	1	14	1.52
421439--421568	51	2.5	51	82	3	154	48	33	0	16	1.52
421620--421662	16	2.7	16	81	0	50	51	25	2	20	1.60
423668--423732	18	3.8	17	78	17	64	33	3	0	63	1.10
423770--423838	21	3.4	21	71	13	65	36	1	0	62	1.04
423758--423836	39	2.0	38	81	13	90	37	1	0	60	1.05
429181--429214	3	11.3	3	100	0	68	64	0	0	35	0.94
434845--434922	28	2.7	28	82	4	93	48	23	2	25	1.63
435598--435632	13	2.7	13	86	0	52	48	14	2	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
435730--435863	63	2.2	62	82	8	157	32	10	12	44	1.77
435745--435863	63	1.9	61	85	10	161	34	7	13	44	1.72
435914--436117	63	3.2	63	68	10	173	40	8	9	40	1.69
435808--436116	127	2.4	125	85	4	386	40	8	10	40	1.71
436493--436664	64	2.7	63	71	12	147	43	11	12	32	1.78
437067--437091	13	1.9	13	100	0	50	44	0	0	56	0.99
442522--442780	140	1.9	140	82	6	337	32	6	14	45	1.72
444291--444388	34	2.9	34	80	3	117	44	13	10	31	1.77
444848--444907	28	2.1	29	90	3	95	68	8	8	15	1.38
446410--446442	2	16.5	2	100	0	66	48	0	0	51	1.00
447475--447511	2	18.5	2	100	0	74	48	0	0	51	1.00
448216--448267	18	2.8	19	85	5	79	59	7	0	32	1.26
448300--448337	19	2.0	20	89	5	60	55	0	2	42	1.14
448302--448354	10	5.4	10	80	8	56	60	1	1	35	1.19
448301--448343	19	2.3	19	84	8	52	58	2	2	37	1.24
448310--448367	20	2.9	20	79	5	55	58	5	1	34	1.30
448430--448463	9	3.8	9	92	0	59	52	0	0	47	1.00
448422--448463	18	2.3	18	95	0	75	52	0	2	45	1.13
448549--448587	10	3.9	10	83	10	53	56	12	0	30	1.37
448554--448616	10	6.3	10	78	5	56	58	4	1	34	1.29
448595--448666	36	2.0	35	84	7	92	56	1	2	38	1.22
448716--448751	16	2.2	17	90	5	56	50	2	0	47	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
448754--448807	18	3.1	17	76	17	58	64	9	3	22	1.38
448926--448955	8	3.8	8	100	0	60	36	0	10	53	1.35
448944--448968	13	1.9	13	100	0	50	24	0	8	68	1.16
449203--449242	10	3.9	10	87	6	62	27	2	2	67	1.16
449183--449241	20	2.9	19	80	7	55	32	3	1	62	1.21
449311--449364	20	2.8	20	81	13	67	40	0	7	51	1.30
449342--449409	29	2.4	27	78	7	73	33	1	2	61	1.20
449359--449411	19	2.9	17	76	17	54	30	1	1	66	1.13
449359--449409	18	2.9	17	81	16	52	31	1	1	64	1.15
449514--449584	20	3.5	20	76	3	79	36	1	7	54	1.36
452933--452989	23	2.5	23	88	0	78	45	1	0	52	1.11
456848--456887	19	2.3	17	87	12	55	60	0	0	40	0.97
456848--456890	18	2.6	16	82	13	59	60	0	0	39	0.97
456848--456896	17	2.9	17	79	8	55	59	0	0	40	0.98
456941--456969	15	1.9	15	100	0	58	41	0	0	58	0.98
456942--456974	15	2.3	15	89	5	50	42	0	0	57	0.98
456985--457053	26	2.7	26	84	4	88	47	0	1	50	1.09
457017--457055	16	2.5	15	87	4	60	51	0	0	48	1.00
457078--457115	19	2.0	19	89	0	58	52	0	2	44	1.14
457151--457205	21	2.5	21	85	5	65	47	1	0	50	1.11
457134--457218	23	3.7	23	71	23	63	47	2	0	50	1.14
457363--457426	32	2.1	30	85	5	83	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
457977--458005	14	2.1	14	93	6	51	58	0	0	41	0.98
458035--458064	12	2.6	11	90	10	51	50	0	0	50	1.00
464068--464114	16	3.1	16	75	6	53	46	0	0	53	1.00
466434--466474	18	2.4	18	80	8	50	60	7	0	31	1.24
466481--466568	23	4.0	22	73	17	76	73	2	6	17	1.15
467342--467389	3	16.7	3	85	8	64	64	2	2	31	1.16
467379--467412	17	2.0	17	88	0	50	47	8	5	38	1.59
467874--468168	119	2.5	118	77	7	310	49	12	20	18	1.79
468616--468693	38	2.1	38	92	0	129	44	5	25	24	1.74
477940--477969	3	10.0	3	92	0	51	36	0	0	63	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77